RGD DISEASE ONTOLOGY - ANNOTATIONS
RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term: Nervous System Trauma
Accession: DOID:9006062
browse the term
Definition: Traumatic injuries to the brain, cranial nerves, spinal cord, autonomic nervous system, or neuromuscular system, including iatrogenic injuries induced by surgical procedures.
Synonyms: exact_synonym: Axonotmesis; Craniocervical Injuries; Craniocervical Injury; Nervous System Injuries; Nervous System Injury; Nervous System Traumas; Neurotmeses; axonotmeses; neurotmesis
primary_id: MESH:D020196
xref: EFO:0009490
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Grin2b
glutamate ionotropic receptor NMDA type subunit 2B
IEP
protein:increased expression:spinal cord dorsal horn (rat)
RGD
PMID:20079352
RGD:4107024
NCBI chr 4:168,580,824...169,044,110
Ensembl chr 4:168,599,546...169,042,279
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Nos1
nitric oxide synthase 1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:10531423
NCBI chr12:38,615,111...38,795,492
Ensembl chr12:38,626,714...38,710,945
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P2rx3
purinergic receptor P2X 3
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:24136739
NCBI chr 3:70,080,850...70,124,664
Ensembl chr 3:70,080,851...70,125,178
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Spp1
secreted phosphoprotein 1
IDA
RGD
PMID:15625076
RGD:1581125
NCBI chr14:5,308,885...5,315,120
Ensembl chr14:5,308,885...5,315,162
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Stat1
signal transducer and activator of transcription 1
IDA
protein:increased phosphorylation:ganglion
RGD
PMID:17097800
RGD:1600090
NCBI chr 9:49,419,561...49,459,969
Ensembl chr 9:49,419,340...49,588,540
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Epo
erythropoietin
treatment
ISO
RGD
PMID:23415790
RGD:10401075
NCBI chr12:19,204,258...19,207,948
Ensembl chr12:19,204,508...19,207,946
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F7
coagulation factor VII
ISO
CTD Direct Evidence: therapeutic
CTD
PMID:12503044
NCBI chr16:76,489,775...76,500,636
Ensembl chr16:76,489,717...76,500,610
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Kcnn4
potassium calcium-activated channel subfamily N member 4
treatment
IMP
RGD
PMID:15379997
RGD:329969897
NCBI chr 1:79,956,380...79,974,354
Ensembl chr 1:79,959,322...79,974,340
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Cfl1
cofilin 1
treatment
ISO
RGD
PMID:25708984
RGD:12738361
NCBI chr 1:202,796,012...202,801,337
Ensembl chr 1:202,786,627...202,817,587
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Drd2
dopamine receptor D2
IEP
RGD
PMID:26448536
RGD:13506960
NCBI chr 8:49,708,927...49,772,876
Ensembl chr 8:49,708,927...49,772,875
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Drd3
dopamine receptor D3
IEP
RGD
PMID:26448536
RGD:13506960
NCBI chr11:56,879,689...56,931,901
Ensembl chr11:56,879,689...56,940,596
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Drd4
dopamine receptor D4
IEP
RGD
PMID:26448536
RGD:13506960
NCBI chr 1:196,396,366...196,400,824
Ensembl chr 1:196,396,366...196,399,553
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Il6
interleukin 6
treatment
IDA
RGD
PMID:27113205
RGD:11062140
NCBI chr 4:5,214,602...5,219,178
Ensembl chr 4:5,213,394...5,219,178
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Casp3
caspase 3
treatment
IEP
RGD
PMID:28140659
RGD:13782305
NCBI chr16:45,662,910...45,681,171
Ensembl chr16:45,662,910...45,684,648
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Casp8
caspase 8
treatment
IEP
RGD
PMID:28140659
RGD:13782305
NCBI chr 9:60,263,863...60,312,542
Ensembl chr 9:60,264,075...60,312,542
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Abcc8
ATP binding cassette subfamily C member 8
treatment
IMP
RGD
PMID:21107131
RGD:12791995
NCBI chr 1:96,598,568...96,679,563
Ensembl chr 1:96,598,647...96,679,510
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Acan
aggrecan
IEP
mRNA:increased expression:fascia dentata (rat)
RGD
PMID:18511192
RGD:2315807
NCBI chr 1:132,981,582...133,044,416
Ensembl chr 1:132,981,582...133,043,627
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Actr2
actin related protein 2
IEP
mRNA, protein:decreased expression:hippocampus (rat)
RGD
PMID:22120305
RGD:11530046
NCBI chr14:94,296,443...94,333,735
Ensembl chr14:94,296,443...94,340,524
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Adcyap1
adenylate cyclase activating polypeptide 1
IDA
RGD
PMID:16689670
RGD:2325298
NCBI chr 9:113,102,632...113,122,500
Ensembl chr 9:113,103,718...113,109,773
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Adra1a
adrenoceptor alpha 1A
IEP
mRNA:increased expression:frontal cortex
RGD
PMID:20974230
RGD:5688366
NCBI chr15:40,830,125...40,935,902
Ensembl chr15:40,832,534...40,927,500
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Ager
advanced glycosylation end product-specific receptor
ISO IEP
protein:increased expression:brain (rat)
RGD
PMID:22915134 PMID:24859607 PMID:22491548
RGD:7245513 , RGD:8696001 , RGD:7245557
NCBI chr20:4,148,150...4,151,361
Ensembl chr20:4,147,890...4,151,078
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Aif1
allograft inflammatory factor 1
IEP
protein:increased expression:cerebral cortex (rat)
RGD
PMID:19520144
RGD:2313020
NCBI chr20:3,646,784...3,652,670
Ensembl chr20:3,646,777...3,652,668
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Aifm1
apoptosis inducing factor, mitochondria associated 1
IEP
protein:increased expression:nucleus:
RGD
PMID:12091479
RGD:10053567
NCBI chr X:127,650,223...127,689,356
Ensembl chr X:127,650,226...127,689,256
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Akt1
AKT serine/threonine kinase 1
IEP
protein:increased phosphorylation:brain, neuron
RGD
PMID:16234845
RGD:5509090
NCBI chr 6:131,713,716...131,735,319
Ensembl chr 6:131,713,720...131,733,921
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Alb
albumin
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:7909931 PMID:17188501
NCBI chr14:17,607,397...17,622,814
Ensembl chr14:17,607,381...17,622,836
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Ambp
alpha-1-microglobulin/bikunin precursor
ISO
protein:increased expression:urine
RGD
PMID:14592616
RGD:6904155
NCBI chr 5:76,568,094...76,578,416
Ensembl chr 5:76,568,094...76,578,331
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Ank3
ankyrin 3
IEP
RGD
PMID:20557305
RGD:6767288
NCBI chr20:18,602,267...19,225,831
Ensembl chr20:18,602,786...19,086,300
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Anp32a
acidic nuclear phosphoprotein 32 family member A
IEP
RGD
PMID:24385964
RGD:10401136
NCBI chr 8:62,829,099...62,865,443
Ensembl chr 8:62,827,456...62,865,443
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Apaf1
apoptotic peptidase activating factor 1
IEP
protein:increased expression:cerebral cortex
RGD
PMID:11567033
RGD:2325751
NCBI chr 7:25,494,143...25,579,540
Ensembl chr 7:25,494,609...25,579,540
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Apbb1
amyloid beta precursor protein binding family B member 1
IEP
mRNA:increased expression:brain
RGD
PMID:12707777
RGD:2301208
NCBI chr 1:159,896,889...159,920,505
Ensembl chr 1:159,896,880...159,920,627
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Apex1
apurinic/apyrimidinic endodeoxyribonuclease 1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:11447995
NCBI chr15:24,144,595...24,146,785
Ensembl chr15:24,144,362...24,146,785
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Apod
apolipoprotein D
IEP
mRNA, protein:increased expression:cerebral cortex, glia cell, neuron
RGD
PMID:10501208
RGD:2311202
NCBI chr11:69,431,261...69,452,306
Ensembl chr11:69,431,260...69,452,305
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Apoe
apolipoprotein E
ISO
GAD
PMID:15118671
RGD:1331525
NCBI chr 1:79,353,924...79,357,852
Ensembl chr 1:79,353,916...79,357,932
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App
amyloid beta precursor protein
ISO
protein:increased expression:hippocampus
RGD
PMID:16300758
RGD:10054281
NCBI chr11:24,019,774...24,236,584
Ensembl chr11:24,019,778...24,236,561
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Aqp4
aquaporin 4
IEP ISO
protein:increased expression:cerebral cortex
RGD
PMID:21083433 PMID:21488209
RGD:5148014 , RGD:5148034
NCBI chr18:6,507,903...6,524,558
Ensembl chr18:6,507,903...6,524,856
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Asic1
acid sensing ion channel subunit 1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:21307247
NCBI chr 7:130,798,317...130,828,535
Ensembl chr 7:130,799,917...130,828,541
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Astn1
astrotactin 1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:14499481
NCBI chr13:70,537,423...70,855,440
Ensembl chr13:70,537,703...70,855,440
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Atg12
autophagy related 12
IEP
protein:altered localization:brain
RGD
PMID:18059433
RGD:2301217
NCBI chr18:39,452,247...39,462,424
Ensembl chr18:39,452,191...39,462,418
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Atp5pd
ATP synthase peripheral stalk subunit d
treatment
IDA
RGD
PMID:26813465
RGD:13800884
NCBI chr10:100,657,700...100,662,960
Ensembl chr10:100,657,708...100,663,479
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Avpr1a
arginine vasopressin receptor 1A
IEP
mRNA:increased expression:cerebral cortex
RGD
PMID:17244947
RGD:2300372
NCBI chr 7:58,114,306...58,118,230
Ensembl chr 7:58,114,284...58,122,215
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Bad
BCL2-associated agonist of cell death
IEP
mRNA, protein:increased expression:cerebral cortex
RGD
PMID:15941375
RGD:2292694
NCBI chr 1:204,133,502...204,142,829
Ensembl chr 1:204,131,501...204,142,823
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Bax
BCL2 associated X, apoptosis regulator
treatment
IEP
RGD
PMID:20888848
RGD:10054247
NCBI chr 1:95,940,001...95,945,407
Ensembl chr 1:95,938,808...95,945,368
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Bcat1
branched chain amino acid transaminase 1
IEP
Protein:increased expression:neurons
RGD
PMID:10686349
RGD:631308
NCBI chr 4:177,964,834...178,046,573
Ensembl chr 4:177,964,834...178,046,597
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Bcl2
BCL2, apoptosis regulator
treatment
IMP IEP
RGD
PMID:18093155 PMID:20888848
RGD:2293059 , RGD:10054247
NCBI chr13:22,689,783...22,853,920
Ensembl chr13:22,684,989...22,853,743 Ensembl chr13:22,684,989...22,853,743
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Bdnf
brain-derived neurotrophic factor
IEP ISO
CTD Direct Evidence: marker/mechanism|therapeutic
CTD RGD
PMID:15500971 PMID:21269288 PMID:20544832
RGD:4891136
NCBI chr 3:96,165,042...96,215,621
Ensembl chr 3:96,165,042...96,215,615
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Becn1
beclin 1
IEP ISO
protein:increased expression:neuron, astrocyte CTD Direct Evidence: therapeutic protein:increased expression:hippocampus protein:increased expression:brain
CTD RGD
PMID:34929507 PMID:18500386 PMID:24221859 PMID:16874043
RGD:6483098 , RGD:11558018 , RGD:6483314
NCBI chr10:86,231,387...86,246,742
Ensembl chr10:86,231,388...86,246,742
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Birc5
baculoviral IAP repeat-containing 5
IEP
mRNA, protein:increased expression:brain, astrocyte, neuron
RGD
PMID:15453988
RGD:2293136
NCBI chr10:103,072,530...103,081,382
Ensembl chr10:103,073,408...103,081,380
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Bmp6
bone morphogenetic protein 6
IEP
protein:increased expression:brain, astrocyte, neuron
RGD
PMID:16388909
RGD:2289020
NCBI chr17:26,318,121...26,469,691
Ensembl chr17:26,318,569...26,470,365
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Bmpr2
bone morphogenetic protein receptor type 2
IEP
mRNA:increased expression:dentate gyrus, neuron
RGD
PMID:9080432
RGD:5129488
NCBI chr 9:61,192,718...61,307,280
Ensembl chr 9:61,190,566...61,301,809
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Bysl
bystin-like
IEP
mRNA, protein:increased expression:substantia nigra, striatum (rat)
RGD
PMID:15305856
RGD:2316201
NCBI chr 9:13,382,806...13,392,557
Ensembl chr 9:13,382,557...13,394,339
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C1qa
complement C1q A chain
IEP
RGD
PMID:23808389
RGD:10054313
NCBI chr 5:149,133,635...149,136,482
Ensembl chr 5:149,133,636...149,136,534
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C3
complement C3
IEP
RGD
PMID:23808389
RGD:10054313
NCBI chr 9:2,087,437...2,114,366
Ensembl chr 9:2,087,437...2,114,429
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Cask
calcium/calmodulin dependent serine protein kinase
IEP
RGD
PMID:25089700
RGD:11576302
NCBI chr X:8,899,500...9,243,014
Ensembl chr X:8,899,833...9,238,694
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Casp1
caspase 1
IEP
mRNA, protein:increased expression:brain
RGD
PMID:17188500
RGD:2315917
NCBI chr 8:2,587,812...2,597,403
Ensembl chr 8:2,587,831...2,597,383
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Casp12
caspase 12
severity
IEP
mRNA, protein:increased expression, increased activity:cerebral cortex, hippocampus, neuron, astrocyte
RGD
PMID:14675152
RGD:2311485
NCBI chr 8:2,642,296...2,669,549
Ensembl chr 8:2,642,434...2,674,037
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Casp3
caspase 3
treatment
IEP
RGD
PMID:20888848
RGD:10054247
NCBI chr16:45,662,910...45,681,171
Ensembl chr16:45,662,910...45,684,648
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Casp8
caspase 8
IEP
protein:altered localization
RGD
PMID:15590916
RGD:1624191
NCBI chr 9:60,263,863...60,312,542
Ensembl chr 9:60,264,075...60,312,542
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Cast
calpastatin
severity
IEP
mRNA:increased expression:cerebral cortex
RGD
PMID:15307896
RGD:5509821
NCBI chr 2:3,973,112...4,082,658
Ensembl chr 2:3,973,112...4,082,659
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Ccl2
C-C motif chemokine ligand 2
treatment
IEP ISO IMP
protein:increased expression:brain, neuron CTD Direct Evidence: marker/mechanism
CTD RGD
PMID:21549006 PMID:19210118 PMID:11113322
RGD:2306999 , RGD:9587789
NCBI chr10:67,005,424...67,007,222
Ensembl chr10:67,005,424...67,007,226
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Ccl20
C-C motif chemokine ligand 20
treatment
IEP
RGD
PMID:22040257
RGD:7483630
NCBI chr 9:84,389,031...84,391,629
Ensembl chr 9:84,388,904...84,391,629
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Ccr5
C-C motif chemokine receptor 5
IEP
mRNA:increased expression:hippocampus
RGD
PMID:24344922
RGD:8552265
NCBI chr 8:123,752,423...123,757,538
Ensembl chr 8:123,752,325...123,759,260
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Cd14
CD14 molecule
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:21549006
NCBI chr18:28,335,522...28,337,383
Ensembl chr18:28,335,340...28,337,261
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Cd40
CD40 molecule
treatment
IDA
RGD
PMID:23924471
RGD:7248749
NCBI chr 3:153,790,372...153,805,279
Ensembl chr 3:153,790,449...153,805,534
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Cd40lg
CD40 ligand
treatment
IEP IDA
RGD
PMID:11755016 PMID:25972624
RGD:8547803 , RGD:11344972
NCBI chr X:135,127,052...135,138,768
Ensembl chr X:135,126,969...135,138,306
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Cdkn1a
cyclin-dependent kinase inhibitor 1A
IEP
protein:increased expression:nucleus:
RGD
PMID:9914434
RGD:8662346
NCBI chr20:7,149,177...7,159,727
Ensembl chr20:7,149,217...7,159,585
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Cdkn1b
cyclin-dependent kinase inhibitor 1B
IEP
protein:decreased expression:cerebral cortex
RGD
PMID:21728064
RGD:10045359
NCBI chr 4:167,760,067...167,765,177
Ensembl chr 4:167,760,181...167,764,982
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Cebpa
CCAAT/enhancer binding protein alpha
ISO
mRNA, protein:increased expression:cerebral cortex (mouse)
RGD
PMID:19833158
RGD:10401206
NCBI chr 1:87,759,631...87,762,303
Ensembl chr 1:87,759,433...87,762,412
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Cebpb
CCAAT/enhancer binding protein beta
ISO
mRNA, protein:increased expression:cerebral cortex (mouse) CTD Direct Evidence: marker/mechanism
CTD RGD
PMID:21549006 PMID:19833158
RGD:10401206
NCBI chr 3:156,398,035...156,399,466
Ensembl chr 3:156,397,052...156,399,473
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Ces1d
carboxylesterase 1D
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:23159883
NCBI chr19:13,873,490...13,912,035
Ensembl chr19:13,796,623...13,912,035
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Cfb
complement factor B
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:17474994
NCBI chr20:3,970,643...3,976,510
Ensembl chr20:3,951,474...3,976,505
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Chrm2
cholinergic receptor, muscarinic 2
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:23159883
NCBI chr 4:65,015,408...65,149,104
Ensembl chr 4:65,014,144...65,149,103
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Chrna7
cholinergic receptor nicotinic alpha 7 subunit
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:23159883
NCBI chr 1:116,711,559...116,837,269
Ensembl chr 1:116,714,711...116,837,240
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Ckmt1
creatine kinase, mitochondrial 1
treatment
IEP
RGD
PMID:24252176
RGD:11565089
NCBI chr 3:108,329,859...108,335,760
Ensembl chr 3:108,330,705...108,335,758
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Clec4e
C-type lectin domain family 4, member E
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:21549006
NCBI chr 4:156,606,927...156,612,911
Ensembl chr 4:156,607,614...156,612,767
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Cnp
2',3'-cyclic nucleotide 3' phosphodiesterase
IEP
protein:increased expression:hippocampus
RGD
PMID:20215974
RGD:6483336
NCBI chr10:85,511,164...85,517,723
Ensembl chr10:85,511,160...85,517,720
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Comt
catechol-O-methyltransferase
IEP
protein:increased expression:hippocampus
RGD
PMID:17240060
RGD:2289740
NCBI chr11:82,568,052...82,587,642
Ensembl chr11:82,568,025...82,587,642
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Crp
C-reactive protein
disease_progression
ISO
RGD
PMID:24456846
RGD:9585646
NCBI chr13:85,135,384...85,175,178
Ensembl chr13:85,124,977...85,175,178
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Csf2
colony stimulating factor 2
disease_progression
IDA
RGD
PMID:21515263
RGD:5686795
NCBI chr10:38,386,945...38,388,926
Ensembl chr10:38,386,945...38,389,199
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Csf3
colony stimulating factor 3
treatment
ISO
CTD Direct Evidence: marker/mechanism
CTD RGD
PMID:21549006 PMID:24239694
RGD:11039431
NCBI chr10:83,660,787...83,664,569
Ensembl chr10:83,661,207...83,663,603
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Cspg4
chondroitin sulfate proteoglycan 4
IEP
protein:altered expression:cerebral cortex
RGD
PMID:19473238
RGD:5686860
NCBI chr 8:57,264,962...57,300,010
Ensembl chr 8:57,264,962...57,300,010
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Cul5
cullin 5
IEP
mRNA, protein:decreased expression:cerebral cortex, hippocampus
RGD
PMID:17010517
RGD:2301432
NCBI chr 8:54,012,963...54,066,751
Ensembl chr 8:54,016,006...54,066,666
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Cxcl1
C-X-C motif chemokine ligand 1
IEP
mRNA:increased expression:choroid plexus, cerebral cortex
RGD
PMID:19471279
RGD:5135009
NCBI chr14:17,193,364...17,195,143
Ensembl chr14:17,193,365...17,195,215
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Cxcl10
C-X-C motif chemokine ligand 10
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:21549006
NCBI chr14:15,704,772...15,706,969
Ensembl chr14:15,704,758...15,706,975
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Cxcl2
C-X-C motif chemokine ligand 2
IEP
protein:increased expression:brain, neuron
RGD
PMID:19210118
RGD:2306999
NCBI chr14:17,181,030...17,183,075
Ensembl chr14:17,181,062...17,183,075
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Cyp11a1
cytochrome P450, family 11, subfamily a, polypeptide 1
IEP
mRNA:increased expression:hindbrain
RGD
PMID:16329132
RGD:1599699
NCBI chr 8:58,422,807...58,434,342
Ensembl chr 8:58,404,669...58,434,338
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Cyp4f1
cytochrome P450, family 4, subfamily f, polypeptide 1
IEP
RGD
PMID:18847377
RGD:2301705
NCBI chr 7:12,010,850...12,022,497
Ensembl chr 7:12,010,852...12,022,046
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Dab2
DAB adaptor protein 2
IEP
RGD
PMID:15774263
RGD:7243841
NCBI chr 2:55,514,692...55,567,476
Ensembl chr 2:55,514,700...55,567,476
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Dnmt1
DNA methyltransferase 1
IEP
RGD
PMID:19429151
RGD:9588608
NCBI chr 8:19,440,611...19,486,659
Ensembl chr 8:19,440,611...19,486,659
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Dpysl2
dihydropyrimidinase-like 2
IEP
protein:increased degradation:cerebral cortex, hippocampus
RGD
PMID:17402852
RGD:2303056
NCBI chr15:41,005,551...41,111,724
Ensembl chr15:41,005,551...41,111,829
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Drd2
dopamine receptor D2
IDA
RGD
PMID:18509630
RGD:2311580
NCBI chr 8:49,708,927...49,772,876
Ensembl chr 8:49,708,927...49,772,875
G
Dusp5
dual specificity phosphatase 5
IEP
mRNA:increased expression:cerebral cortex
RGD
PMID:12503083
RGD:2317873
NCBI chr 1:252,538,408...252,555,320
Ensembl chr 1:252,538,449...252,551,818
G
Eif2s1
eukaryotic translation initiation factor 2 subunit alpha
IDA
RGD
PMID:11526986
RGD:10395358
NCBI chr 6:97,672,829...97,697,499
Ensembl chr 6:97,672,766...97,706,225
G
Eif3e
eukaryotic translation initiation factor 3 subunit E
treatment
IMP
RGD
PMID:22960363
RGD:10395371
NCBI chr 7:74,339,848...74,372,483
Ensembl chr 7:74,339,828...74,373,096
G
Elk1
ETS transcription factor ELK1
IDA
RGD
PMID:15362724
RGD:7488910
NCBI chr X:1,138,826...1,155,713
Ensembl chr X:1,139,756...1,155,713
G
Epas1
endothelial PAS domain protein 1
treatment
IDA
RGD
PMID:22960363
RGD:10395371
NCBI chr 6:7,790,236...7,871,717
Ensembl chr 6:7,790,647...7,871,228
G
Epha4
Eph receptor A4
ISO
protein:increased expression, increased activity:astrocyte
RGD
PMID:22318127
RGD:5688763
NCBI chr 9:78,815,460...78,958,139
Ensembl chr 9:78,815,460...78,958,139
G
Ephx2
epoxide hydrolase 2
ISO
RGD
PMID:21075124
RGD:5688356
NCBI chr15:40,289,901...40,327,632
Ensembl chr15:40,289,902...40,327,615
G
Epo
erythropoietin
treatment
ISO IEP
CTD Direct Evidence: therapeutic mRNA:increased expression:brain:
CTD RGD
PMID:20833152 PMID:23063952 PMID:18093155
RGD:10401061 , RGD:2293059
NCBI chr12:19,204,258...19,207,948
Ensembl chr12:19,204,508...19,207,946
G
Epor
erythropoietin receptor
IEP
mRNA:increased expression:brain:
RGD
PMID:18093155
RGD:2293059
NCBI chr 8:20,489,678...20,494,257
Ensembl chr 8:20,489,678...20,494,257
G
F2
coagulation factor II, thrombin
severity
ISO
RGD
PMID:21355766
RGD:5147766
NCBI chr 3:77,596,196...77,609,486
Ensembl chr 3:77,596,198...77,609,486
G
Fas
Fas cell surface death receptor
IEP ISO
mRNA:increased expression:hippocampus associated with Hyperoxia
RGD
PMID:16078565 PMID:19107989
RGD:1600354 , RGD:8662854
NCBI chr 1:231,798,963...231,832,591
Ensembl chr 1:231,798,960...231,832,591
G
Fgf2
fibroblast growth factor 2
ISO
CTD Direct Evidence: therapeutic
CTD
PMID:21269288
NCBI chr 2:120,236,328...120,290,673
Ensembl chr 2:120,236,328...120,291,221
G
Fmr1
fragile X messenger ribonucleoprotein 1
IEP
protein:altered localization:hippocampus (rat)
RGD
PMID:16510718
RGD:11667962
NCBI chr X:147,240,239...147,278,057
Ensembl chr X:147,240,301...147,278,050
G
Fos
Fos proto-oncogene, AP-1 transcription factor subunit
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:9630518
NCBI chr 6:105,121,170...105,124,036
Ensembl chr 6:105,121,170...105,124,036
G
Foxp1
forkhead box P1
treatment
IDA
RGD
PMID:26842647
RGD:11561903
NCBI chr 4:131,559,599...132,155,092
Ensembl chr 4:131,564,756...132,112,258
G
G6pd
glucose-6-phosphate dehydrogenase
IEP
protein:decreased expression:hippocampus
RGD
PMID:18501200
RGD:2307353
NCBI chr X:152,201,081...152,220,863
Ensembl chr X:152,201,098...152,220,801
G
Gabrb3
gamma-aminobutyric acid type A receptor subunit beta 3
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:23159883
NCBI chr 1:108,467,047...108,702,522
Ensembl chr 1:108,296,124...108,698,961
G
Gabrg3
gamma-aminobutyric acid type A receptor subunit gamma 3
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:23159883
NCBI chr 1:107,627,450...108,247,483
Ensembl chr 1:107,627,390...108,246,763
G
Gdnf
glial cell derived neurotrophic factor
IEP
mRNA:increased expression:brain
RGD
PMID:18501516
RGD:2324932
NCBI chr 2:56,894,022...56,919,935
Ensembl chr 2:56,895,010...56,917,209
G
Gja1
gap junction protein, alpha 1
treatment
IEP
RGD
PMID:23485053
RGD:8662424
NCBI chr20:35,756,007...35,768,481
Ensembl chr20:35,755,991...35,768,582
G
Gja5
gap junction protein, alpha 5
IEP
protein:increased expression:cerebral artery
RGD
PMID:21895483
RGD:7207391
NCBI chr 2:184,602,407...184,621,952
Ensembl chr 2:184,564,475...184,621,952
G
Gpx1
glutathione peroxidase 1
IEP
mRNA:decreased expression:hippocampus, neuron
RGD
PMID:15791111
RGD:2306624
NCBI chr 8:109,026,905...109,028,031
Ensembl chr 8:109,026,905...109,028,024
G
Grm8
glutamate metabotropic receptor 8
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:23159883
NCBI chr 4:55,805,762...56,731,690
Ensembl chr 4:55,805,955...56,730,831
G
Gsk3b
glycogen synthase kinase 3 beta
IEP ISO
CTD Direct Evidence: marker/mechanism
CTD RGD
PMID:24675465 PMID:22643085
RGD:10045646
NCBI chr11:62,498,997...62,648,665
Ensembl chr11:62,504,316...62,648,646
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Gsn
gelsolin
IEP
RGD
PMID:14588109
RGD:1599864
NCBI chr 3:18,585,166...18,638,404
Ensembl chr 3:18,585,172...18,638,402
G
Hcn1
hyperpolarization-activated cyclic nucleotide-gated potassium channel 1
IEP
mRNA,protein:decreased expression:hippocampus:
RGD
PMID:11726545
RGD:9686434
NCBI chr 2:49,495,771...49,899,983
Ensembl chr 2:49,495,771...49,899,774
G
Hmgb1
high mobility group box 1
treatment
IMP
RGD
PMID:22915134
RGD:7245513
NCBI chr12:5,972,950...5,979,658
Ensembl chr12:5,901,586...5,978,565 Ensembl chr16:5,901,586...5,978,565
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Hmgcr
3-hydroxy-3-methylglutaryl-CoA reductase
IMP
RGD
PMID:18562561
RGD:5508455
NCBI chr 2:27,997,523...28,018,983
Ensembl chr 2:27,997,525...28,019,703
G
Hmox1
heme oxygenase 1
IEP
RGD
PMID:23470432
RGD:10755702
NCBI chr19:13,466,287...13,474,082
Ensembl chr19:13,467,244...13,474,079
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Hp
haptoglobin
IEP
mRNA:increased expression:liver
RGD
PMID:23172820
RGD:11041806
NCBI chr19:37,539,626...37,544,178
Ensembl chr19:37,539,627...37,544,523
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Hspa1a
heat shock protein family A (Hsp70) member 1A
ISO
mRNA:increased expression:brain CTD Direct Evidence: marker/mechanism
CTD RGD
PMID:21549006 PMID:21549006
RGD:5147593
NCBI chr20:3,870,765...3,873,221
Ensembl chr20:3,856,006...3,873,227
G
Hspa4
heat shock protein family A (Hsp70) member 4
IEP
protein:increased expression:cerebral white matter (rat)
RGD
PMID:22067617
RGD:5688785
NCBI chr10:37,408,025...37,449,080
Ensembl chr10:37,408,025...37,449,001
G
Hspb1
heat shock protein family B (small) member 1
IEP
RGD
PMID:11746764
RGD:6480530
NCBI chr12:20,794,014...20,795,675
Ensembl chr12:20,794,028...20,795,743
G
Htr7
5-hydroxytryptamine receptor 7
IMP
RGD
PMID:22465320
RGD:6482178
NCBI chr 1:233,636,442...233,761,063
Ensembl chr 1:233,636,452...233,760,626
G
Icam1
intercellular adhesion molecule 1
IEP
protein:increased expression:brain:
RGD
PMID:16230799
RGD:11522716
NCBI chr 8:19,553,063...19,565,438
Ensembl chr 8:19,553,645...19,565,438
G
Ifnl3
interferon, lambda 3
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:23159883
NCBI chr 1:83,814,456...83,816,096
Ensembl chr 1:83,814,564...83,816,096
G
Igf1
insulin-like growth factor 1
treatment
ISO
human protein in a rat model
RGD
PMID:9344566
RGD:12904928
NCBI chr 7:22,282,895...22,361,972
Ensembl chr 7:22,282,930...22,359,296
G
Igf2
insulin-like growth factor 2
IEP
mRNA:decreased expression:brain
RGD
PMID:11123717
RGD:5509972
NCBI chr 1:197,814,409...197,831,802
Ensembl chr 1:197,814,410...197,823,018
G
Il10
interleukin 10
severity treatment
ISO IDA
CTD Direct Evidence: marker/mechanism
CTD RGD
PMID:21549006 PMID:23075771 PMID:23971414
RGD:7364822 , RGD:7364983
NCBI chr13:42,472,625...42,477,308
Ensembl chr13:42,472,839...42,477,313
G
Il12rb2
interleukin 12 receptor subunit beta 2
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:23159883
NCBI chr 4:96,426,396...96,515,251
Ensembl chr 4:96,426,842...96,515,289
G
Il13ra2
interleukin 13 receptor subunit alpha 2
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:23159883
NCBI chr X:111,002,590...111,074,053
Ensembl chr X:111,002,592...111,072,381
G
Il16
interleukin 16
IEP
RGD
PMID:17983426
RGD:5024939
NCBI chr 1:137,617,702...137,718,022
Ensembl chr 1:137,617,944...137,718,130
G
Il17rd
interleukin 17 receptor D
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:23159883
NCBI chr16:2,228,438...2,295,122
Ensembl chr16:2,228,287...2,292,556
G
Il18
interleukin 18
severity
IMP ISO
mRNA, protein:increased expression:brain
RGD
PMID:17188500 PMID:17188500
RGD:2315917 , RGD:2315917
NCBI chr 8:50,904,630...50,932,887
Ensembl chr 8:50,906,960...50,932,887
G
Il18r1
interleukin 18 receptor 1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:23159883
NCBI chr 9:42,727,416...42,760,971
Ensembl chr 9:42,727,869...42,760,715
G
Il1a
interleukin 1 alpha
IEP ISO
mRNA, protein:increased expression:cerebral cortex CTD Direct Evidence: marker/mechanism
CTD RGD
PMID:21549006 PMID:16024175
RGD:2311098
NCBI chr 3:116,526,601...116,537,055
Ensembl chr 3:116,526,604...116,536,822
G
Il1b
interleukin 1 beta
IEP ISO
mRNA, protein:increased expression:cerebral cortex CTD Direct Evidence: marker/mechanism protein:increased expression:brain, cerebrospinal fluid mRNA, protein:increased expression:brain
CTD RGD
PMID:19800810 PMID:21549006 PMID:16024175 PMID:22503903 PMID:17612572
RGD:2311098 , RGD:6482651 , RGD:1626652
NCBI chr 3:116,577,005...116,583,386
Ensembl chr 3:116,577,010...116,583,415
G
Il1r1
interleukin 1 receptor type 1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:21549006
NCBI chr 9:42,504,917...42,580,958
Ensembl chr 9:42,504,735...42,579,937
G
Il1rn
interleukin 1 receptor antagonist
ISO
CTD Direct Evidence: therapeutic
CTD
PMID:25665855
NCBI chr 3:7,111,567...7,127,451
Ensembl chr 3:7,111,550...7,127,445
G
Il2
interleukin 2
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:23159883
NCBI chr 2:120,004,862...120,009,566
Ensembl chr 2:120,004,862...120,009,566
G
Il3
interleukin 3
disease_progression
IDA ISO
protein: increased expression: brain: microdialysis perfusate
RGD
PMID:21515263 PMID:20717122
RGD:5686795 , RGD:5686886
NCBI chr10:38,405,716...38,408,066
Ensembl chr10:38,405,716...38,408,066
G
Il31ra
interleukin 31 receptor A
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:23159883
NCBI chr 2:44,118,748...44,189,943
Ensembl chr 2:44,122,624...44,183,767
G
Il4
interleukin 4
IEP
protein:decreased expression:plasma
RGD
PMID:24519543
RGD:10402802
NCBI chr10:37,771,203...37,776,750
Ensembl chr10:37,771,203...37,776,750
G
Il5
interleukin 5
treatment
IEP
RGD
PMID:24602693 PMID:24530657
RGD:11522766 , RGD:11522770
NCBI chr10:37,874,342...37,877,213
Ensembl chr10:37,874,342...37,877,213
G
Il6
interleukin 6
IEP ISO
protein:increased expression:cerebrospinal fluid (rat) CTD Direct Evidence: marker/mechanism
CTD RGD
PMID:19800810 PMID:21549006 PMID:23159883 PMID:10027774
RGD:11049549
NCBI chr 4:5,214,602...5,219,178
Ensembl chr 4:5,213,394...5,219,178
G
Il7
interleukin 7
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:23159883
NCBI chr 2:94,235,219...94,280,075
Ensembl chr 2:94,234,766...94,280,075
G
Il9r
interleukin 9 receptor
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:23159883
NCBI chr10:15,431,706...15,444,144
Ensembl chr10:15,431,706...15,441,990
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Irf1
interferon regulatory factor 1
IEP ISO
mRNA:increased expression:cerebral cortex CTD Direct Evidence: marker/mechanism
CTD RGD
PMID:21549006 PMID:12503083
RGD:2317873
NCBI chr10:37,917,155...37,924,166
Ensembl chr10:37,916,670...37,924,166
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Jak2
Janus kinase 2
IMP
RGD
PMID:21596098
RGD:6483023
NCBI chr 1:226,995,334...227,054,381
Ensembl chr 1:226,995,334...227,054,189
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Jun
Jun proto-oncogene, AP-1 transcription factor subunit
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:21549006
NCBI chr 5:109,894,175...109,897,268
Ensembl chr 5:109,893,145...109,897,656
G
Kcnj10
potassium inwardly-rectifying channel, subfamily J, member 10
IEP
RGD
PMID:20861444
RGD:8662901
NCBI chr13:84,802,026...84,835,383
Ensembl chr13:84,802,009...84,835,461
G
Kdr
kinase insert domain receptor
IEP IMP
protein:increased expression:cerebral cortex
RGD
PMID:21307798 PMID:19733172
RGD:5684382 , RGD:5684402
NCBI chr14:32,217,871...32,261,018
Ensembl chr14:32,217,871...32,261,018
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Lep
leptin
IEP
RGD
PMID:21276361
RGD:5128517
NCBI chr 4:57,661,127...57,675,262
Ensembl chr 4:57,661,131...57,675,262
G
Lsg1
large 60S subunit nuclear export GTPase 1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:14499481
NCBI chr11:70,132,919...70,168,526
Ensembl chr11:70,143,847...70,168,518
G
Ly86
lymphocyte antigen 86
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:21549006
NCBI chr17:27,415,807...27,499,695
Ensembl chr17:27,415,830...27,487,260
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Mag
myelin-associated glycoprotein
susceptibility
IMP
RGD
PMID:17156367
RGD:9685230
NCBI chr 1:86,148,227...86,163,726
Ensembl chr 1:86,148,228...86,163,656
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Map1b
microtubule-associated protein 1B
IEP
protein:increased expression, increased phosphorylation:brain
RGD
PMID:10906717
RGD:2304029
NCBI chr 2:30,817,261...30,910,458
Ensembl chr 2:30,817,261...30,910,317
G
Map1lc3a
microtubule-associated protein 1 light chain 3 alpha
IEP
RGD
PMID:24221859
RGD:11558018
NCBI chr 3:143,783,024...143,784,670
Ensembl chr 3:143,783,024...143,784,670
G
Map2
microtubule-associated protein 2
IEP IDA
protein:decreased expression:cerebral cortex, neuron
RGD
PMID:21401443 PMID:20568963
RGD:6483087 , RGD:6483089
NCBI chr 9:67,723,422...67,981,886
Ensembl chr 9:67,723,371...67,979,809
G
Map3k7
mitogen activated protein kinase kinase kinase 7
treatment
IEP ISO IMP
associated with Subarachnoid Hemorrhage
RGD
PMID:27000704 PMID:33414375 PMID:26100626
RGD:155791672 , RGD:155882440 , RGD:155804286
NCBI chr 5:46,356,973...46,415,597
Ensembl chr 5:46,357,931...46,415,597
G
Mbl2
mannose binding lectin 2
disease_progression
ISO
RGD
PMID:18183030
RGD:12910935
NCBI chr 1:228,016,439...228,024,736
G
Mbp
myelin basic protein
IDA
RGD
PMID:18583256
RGD:7349333
NCBI chr18:75,855,878...75,966,404
Ensembl chr18:75,855,878...75,966,404
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Mdm2
MDM2 proto-oncogene
IEP
protein:increased expression:brain cortex (rat)
RGD
PMID:15165363
RGD:2317397
NCBI chr 7:53,290,660...53,315,205
Ensembl chr 7:53,290,664...53,314,915
G
Mif
macrophage migration inhibitory factor
IEP
RGD
PMID:15922484
RGD:1641989
NCBI chr20:12,790,919...12,791,784
Ensembl chr20:12,790,902...12,799,504
G
Mir132
microRNA 132
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:23159883
NCBI chr10:60,023,696...60,023,796
Ensembl chr10:60,023,696...60,023,796
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Mir144
microRNA 144
IEP
RGD
PMID:25089700
RGD:11576302
NCBI chr10:62,961,348...62,961,430
Ensembl chr10:62,961,348...62,961,430
G
Mir153
microRNA 153
IEP
RGD
PMID:25089700
RGD:11576302
NCBI chr 6:138,163,595...138,163,681
Ensembl chr 6:138,163,595...138,163,681
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Mir183
microRNA 183
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:23159883
NCBI chr 4:58,788,614...58,788,723
Ensembl chr 4:58,788,614...58,788,723
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Mmp9
matrix metallopeptidase 9
treatment
IDA IMP ISO
CTD Direct Evidence: marker/mechanism
CTD RGD
PMID:19631748 PMID:16671440 PMID:24661104
RGD:1582656 , RGD:13207312
NCBI chr 3:153,684,158...153,692,118
Ensembl chr 3:153,683,858...153,692,120
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Mpo
myeloperoxidase
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:23159883
NCBI chr10:72,594,883...72,608,862
Ensembl chr10:72,594,661...72,604,819
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Mt-co2
mitochondrially encoded cytochrome c oxidase II
IEP
mRNA, protein:increased expression:hippocampus
RGD
PMID:11686499
RGD:2302298
NCBI chr MT:7,006...7,689 NCBI chr MT:7,006...7,689 NCBI chr MT:7,006...7,689
Ensembl chr MT:7,006...7,689
G
Mt2A
metallothionein 2A
ISO IEP
mRNA:increased expression:liver (mouse) mRNA:increased expression:dentate gyrus (rat)
RGD
PMID:22363575 PMID:15650329
RGD:6483812 , RGD:6483847
NCBI chr19:10,832,009...10,832,783
Ensembl chr19:10,832,002...10,832,784
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Mt3
metallothionein 3
treatment
IDA IEP
RGD
PMID:16314047 PMID:10595827 PMID:10218634
RGD:6480628 , RGD:9685805 , RGD:9685803
NCBI chr19:10,848,754...10,850,158
Ensembl chr19:10,848,755...10,850,158
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Myoc
myocilin
IEP
mRNA:increased expression:cerebral cortex (rat)
RGD
PMID:12799138
RGD:7401267
NCBI chr13:74,976,730...74,987,128
Ensembl chr13:74,976,730...74,987,127
G
Nfe2l2
NFE2 like bZIP transcription factor 2
IEP
protein:increased expression:lung:
RGD
PMID:18787991 PMID:25089700
RGD:5134971 , RGD:11576302
NCBI chr 3:60,594,239...60,621,712
Ensembl chr 3:60,594,242...60,621,737
G
Ngb
neuroglobin
severity
IEP
RGD
PMID:21915648
RGD:9743963
NCBI chr 6:106,744,378...106,749,830
Ensembl chr 6:106,744,378...106,749,830
G
Ngfr
nerve growth factor receptor
treatment
IDA
RGD
PMID:23940017
RGD:10414074
NCBI chr10:80,515,287...80,533,518
Ensembl chr10:80,515,299...80,533,518
G
Nos2
nitric oxide synthase 2
IEP
RGD
PMID:11526986
RGD:10395358
NCBI chr10:63,815,308...63,851,208
Ensembl chr10:63,815,308...63,851,210
G
Nox4
NADPH oxidase 4
ISO
CTD Direct Evidence: therapeutic
CTD
PMID:36762617
NCBI chr 1:140,900,886...141,078,844
Ensembl chr 1:140,901,097...141,077,406
G
Nppb
natriuretic peptide B
ISO
associated with lung diseases;protein:increased expression:serum: CTD Direct Evidence: therapeutic
CTD RGD
PMID:19803787 PMID:23837838
RGD:7247620
NCBI chr 5:158,416,813...158,418,175
Ensembl chr 5:158,416,866...158,418,168
G
Npy
neuropeptide Y
IEP
protein:increased expression:adrenal medulla
RGD
PMID:23570732
RGD:10448961
NCBI chr 4:78,881,294...78,888,495
Ensembl chr 4:78,881,264...78,888,495
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Nqo1
NAD(P)H quinone dehydrogenase 1
treatment
IEP
mRNA:increased expression:lung associated with Subarachnoid Hemorrhage
RGD
PMID:18787991 PMID:20864352
RGD:5134971 , RGD:11035222
NCBI chr19:35,295,633...35,310,528
Ensembl chr19:35,295,573...35,310,557
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Nt5e
5' nucleotidase, ecto
IEP
protein:altered expression:cerebral cortex (rat)
RGD
PMID:21337375
RGD:5134348
NCBI chr 8:89,271,046...89,314,918
Ensembl chr 8:89,270,696...89,314,881
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P2ry1
purinergic receptor P2Y1
IEP
protein:increased expression:brain, astrocyte
RGD
PMID:19115395
RGD:2315811
NCBI chr 2:145,241,975...145,248,186
Ensembl chr 2:145,241,849...145,248,457
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Palld
palladin, cytoskeletal associated protein
IEP
protein:increased expression:brain, astrocyte
RGD
PMID:12932445
RGD:2325786
NCBI chr16:28,228,006...28,621,349
Ensembl chr16:27,981,354...28,621,337
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Parp1
poly (ADP-ribose) polymerase 1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:17640816
NCBI chr13:92,307,593...92,339,406
Ensembl chr13:92,307,586...92,339,404
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Pawr
pro-apoptotic WT1 regulator
IEP
mRNA,protein:increased expression:brain:
RGD
PMID:11421591
RGD:9835358
NCBI chr 7:43,645,028...43,725,033
Ensembl chr 7:43,645,084...43,725,028
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Pde4d
phosphodiesterase 4D
IEP
mRNA, protein:alternative form, decreased phosphorylation:brain
RGD
PMID:23057870
RGD:7327147
NCBI chr 2:40,014,933...41,529,190
Ensembl chr 2:40,019,933...41,525,884
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Pdgfa
platelet derived growth factor subunit A
IEP
mRNA:increased expression:cerebral cortex, hippocampus
RGD
PMID:9645955
RGD:11084932
NCBI chr12:15,645,549...15,667,056
Ensembl chr12:15,645,541...15,666,497
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Pdgfb
platelet derived growth factor subunit B
IEP
mRNA:increased expression:cerebral cortex, hippocampus
RGD
PMID:9645955
RGD:11084932
NCBI chr 7:111,539,444...111,557,984
Ensembl chr 7:111,540,345...111,557,984
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Pdgfra
platelet derived growth factor receptor alpha
IEP
mRNA:increased expression:cerebral cortex, hippocampus
RGD
PMID:9645955
RGD:11084932
NCBI chr14:33,005,838...33,054,347
Ensembl chr14:33,005,839...33,054,335
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Pdgfrb
platelet derived growth factor receptor beta
IEP
mRNA:increased expression:cerebral cortex, hippocampus
RGD
PMID:9645955
RGD:11084932
NCBI chr18:54,499,962...54,538,840
Ensembl chr18:54,499,964...54,538,843
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Pecam1
platelet and endothelial cell adhesion molecule 1
IDA
RGD
PMID:22658532
RGD:6484732
NCBI chr10:91,590,521...91,652,279
Ensembl chr10:91,590,521...91,652,116
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Pglyrp1
peptidoglycan recognition protein 1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:21549006
NCBI chr 1:78,531,815...78,537,001
Ensembl chr 1:78,531,815...78,537,001
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Pgr
progesterone receptor
IEP
RGD
PMID:23211561
RGD:7248711
NCBI chr 8:6,072,673...6,131,552
Ensembl chr 8:6,072,673...6,131,344
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Phb1
prohibitin 1
IEP
protein:increased oxidation:cerebral cortex
RGD
PMID:17518533
RGD:2292409
NCBI chr10:80,605,268...80,618,043
Ensembl chr10:80,605,251...80,618,042
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Phb2
prohibitin 2
IEP
RGD
PMID:24566151
RGD:12903261
NCBI chr 4:157,517,662...157,522,268
Ensembl chr 4:157,517,577...157,522,272
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Pias1
protein inhibitor of activated STAT, 1
IEP
protein:decreased expression:brain, nucleus
RGD
PMID:21545521
RGD:8693413
NCBI chr 8:63,338,150...63,451,670
Ensembl chr 8:63,338,150...63,438,905
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Ppara
peroxisome proliferator activated receptor alpha
IDA
agonist more effective in combination with simvastatin
RGD
PMID:18562561
RGD:5508455
NCBI chr 7:116,832,405...116,900,878
Ensembl chr 7:116,832,756...116,895,346
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Ppargc1a
PPARG coactivator 1 alpha
treatment
ISO IEP
protein:decreased expression:frontal cortex (rat)
RGD
PMID:22642418 PMID:24345766
RGD:6484257 , RGD:10059630
NCBI chr14:58,860,752...59,516,525
Ensembl chr14:58,861,144...59,512,656
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Ppp3ca
protein phosphatase 3 catalytic subunit alpha
IEP ISO
protein: :hippocampus CTD Direct Evidence: marker/mechanism
CTD RGD
PMID:14499481 PMID:19751097
RGD:6483311
NCBI chr 2:225,165,981...225,440,978
Ensembl chr 2:225,165,766...225,438,974
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Prf1
perforin 1
ISO
RGD
PMID:20537642
RGD:6482807
NCBI chr20:29,246,202...29,251,712
Ensembl chr20:29,246,202...29,251,701
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Ptger3
prostaglandin E receptor 3
IEP
protein:increased expression:striatum, microglia (rat)
RGD
PMID:15234107
RGD:9850280
NCBI chr 2:246,606,131...246,750,970
Ensembl chr 2:246,606,183...246,684,434
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Ptgs1
prostaglandin-endoperoxide synthase 1
ISO IEP
protein:increased expression:microglia, macrophage protein:increased expression:microglial cells, macrophage, endothelial cell
RGD
PMID:19719848 PMID:11565600 PMID:12005397
RGD:5688162 , RGD:5688242 , RGD:5688239
NCBI chr 3:19,584,015...19,605,589
Ensembl chr 3:19,584,015...19,605,586
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Ptgs2
prostaglandin-endoperoxide synthase 2
IMP ISO
CTD Direct Evidence: marker/mechanism
CTD RGD
PMID:12410334 PMID:20810888 PMID:21549006 PMID:21866634 PMID:19719848
RGD:5508191 , RGD:5688162
NCBI chr13:62,163,936...62,172,193
Ensembl chr13:62,163,932...62,172,188
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Ptprz1
protein tyrosine phosphatase, receptor type Z1
IEP
RGD
PMID:12088737
RGD:727637
NCBI chr 4:51,397,316...51,595,220
Ensembl chr 4:51,397,601...51,595,218
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Rchy1
ring finger and CHY zinc finger domain containing 1
IEP
protein:increased expression:cerebral cortex
RGD
PMID:21728064
RGD:10045359
NCBI chr14:16,113,263...16,129,017
Ensembl chr14:16,113,224...16,129,167
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Reg3b
regenerating family member 3 beta
IEP
mRNA:increased expression:cerebral cortex (rat)
RGD
PMID:19351265
RGD:9831399
NCBI chr 4:110,861,775...110,865,015
Ensembl chr 4:110,861,775...110,865,015
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Rela
RELA proto-oncogene, NF-kB subunit
IEP
protein:increased expression:ileum
RGD
PMID:18288455
RGD:2298787
NCBI chr 1:202,925,001...202,935,484
Ensembl chr 1:202,924,945...202,935,484
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Ret
ret proto-oncogene
IEP
mRNA:increased expression:brain
RGD
PMID:18501516
RGD:2324932
NCBI chr 4:151,325,969...151,368,176
Ensembl chr 4:151,326,431...151,368,176
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Rhoa
ras homolog family member A
IEP
protein:increased expression:microglial cell, brain
RGD
PMID:17929039
RGD:2298888
NCBI chr 8:108,991,926...109,025,746
Ensembl chr 8:108,991,954...109,025,746
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Robo1
roundabout guidance receptor 1
IEP
mRNA:increased expression:brain protein:increased expression:brain, immune cell
RGD
PMID:16262652 PMID:26550694
RGD:2316136 , RGD:243048437
NCBI chr11:10,580,863...11,621,675
Ensembl chr11:10,580,908...11,620,203
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Robo2
roundabout guidance receptor 2
IEP
mRNA:increased expression:brain
RGD
PMID:16262652
RGD:2316136
NCBI chr11:12,528,949...14,096,726
Ensembl chr11:12,528,951...13,041,536
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Robo3
roundabout guidance receptor 3
IEP
mRNA:increased expression:brain
RGD
PMID:16262652
RGD:2316136
NCBI chr 8:37,133,542...37,151,674
Ensembl chr 8:37,133,916...37,151,315
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Rps27a
ribosomal protein S27a
IEP
mRNA:decreased expression:cerebral cortex, hippocampus
RGD
PMID:17936732
RGD:11041870
NCBI chr14:103,285,734...103,288,011
Ensembl chr14:103,285,734...103,288,011 Ensembl chr 5:103,285,734...103,288,011
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S100b
S100 calcium binding protein B
severity
ISO
CTD Direct Evidence: marker/mechanism|therapeutic
CTD RGD
PMID:11520488 PMID:21783483 PMID:21976236
RGD:5508761
NCBI chr20:12,372,866...12,381,619
Ensembl chr20:12,372,881...12,394,743
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Sele
selectin E
IEP
protein:increased expression:brain
RGD
PMID:19107536
RGD:2313599
NCBI chr13:76,402,841...76,412,741
Ensembl chr13:76,403,304...76,412,741
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Serpinc1
serpin family C member 1
ISO
CTD Direct Evidence: therapeutic
CTD
PMID:21534203
NCBI chr13:73,257,208...73,271,476
Ensembl chr13:73,257,179...73,284,293
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Serpinf1
serpin family F member 1
treatment
ISO IEP
human gene in a rat model protein:altered expression:cerebellum (rat)
RGD
PMID:20142768 PMID:17709187
RGD:8612994 , RGD:8622925
NCBI chr10:60,250,198...60,262,593
Ensembl chr10:60,249,708...60,262,646
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Sirt1
sirtuin 1
treatment
IEP
RGD
PMID:17970622
RGD:9497541
NCBI chr20:25,307,225...25,329,273
Ensembl chr20:25,306,917...25,329,260
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Skp2
S-phase kinase associated protein 2
IEP
protein:increased expression:brain
RGD
PMID:19852587
RGD:2315049
NCBI chr 2:58,161,226...58,189,293
Ensembl chr 2:58,161,229...58,189,338
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Slc18a3
solute carrier family 18 member A3
IEP
protein:decreased expression:brain
RGD
PMID:18848922
RGD:5686682
NCBI chr16:7,713,630...7,716,491
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Slit1
slit guidance ligand 1
IEP
mRNA:increased expression:brain
RGD
PMID:16262652
RGD:2316136
NCBI chr 1:240,409,559...240,558,127
Ensembl chr 1:240,409,561...240,558,127
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Slit2
slit guidance ligand 2
exacerbates
IMP
RGD
PMID:26550694
RGD:243048437
NCBI chr14:62,616,337...62,955,934
Ensembl chr14:62,617,067...62,955,948
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Slit3
slit guidance ligand 3
IEP
mRNA:increased expression:brain
RGD
PMID:16262652
RGD:2316136
NCBI chr10:19,571,798...20,156,634
Ensembl chr10:19,571,684...20,156,634
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Snca
synuclein alpha
ISO IEP
RGD
PMID:14637093 PMID:25089700
RGD:6480195 , RGD:11576302
NCBI chr 4:89,696,420...89,797,240
Ensembl chr 4:89,696,420...89,796,262
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Sncb
synuclein, beta
ISO
RGD
PMID:14637093
RGD:6480195
NCBI chr17:9,846,802...9,855,013
Ensembl chr17:9,846,802...9,855,012
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Sncg
synuclein, gamma
ISO
RGD
PMID:14637093
RGD:6480195
NCBI chr16:9,700,513...9,705,751
Ensembl chr16:9,700,514...9,705,368
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Snw1
SNW domain containing 1
IEP
mRNA, protein:increased expression:cerebral cortex (rat)
RGD
PMID:22965216
RGD:11035237
NCBI chr 6:107,095,450...107,119,536
Ensembl chr 6:107,095,457...107,119,536
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Sod1
superoxide dismutase 1
ISO
RGD
PMID:16248885
RGD:1581214
NCBI chr11:29,456,673...29,462,249
Ensembl chr11:29,456,558...29,462,249
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Sod2
superoxide dismutase 2
ISO
CTD Direct Evidence: therapeutic
CTD RGD
PMID:24462953 PMID:16248885
RGD:1581214
NCBI chr 1:47,638,318...47,645,163
Ensembl chr 1:47,636,528...47,645,189
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Sparc
secreted protein acidic and cysteine rich
IEP
mRNA:increased expression:brain, blood vessel
RGD
PMID:9704602
RGD:2300066
NCBI chr10:39,516,394...39,538,252
Ensembl chr10:39,516,406...39,538,396
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Sstr2
somatostatin receptor 2
IEP
RGD
PMID:11879809
RGD:2325002
NCBI chr10:98,664,204...98,671,370
Ensembl chr10:98,664,216...98,674,351
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Sstr3
somatostatin receptor 3
IEP
RGD
PMID:11879809
RGD:2325002
NCBI chr 7:110,092,563...110,109,043
Ensembl chr 7:110,092,575...110,099,769
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Sstr4
somatostatin receptor 4
IEP
RGD
PMID:11879809
RGD:2325002
NCBI chr 3:135,854,826...135,856,689
Ensembl chr 3:135,854,826...135,856,689
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Stat1
signal transducer and activator of transcription 1
IMP
RGD
PMID:21596098
RGD:6483023
NCBI chr 9:49,419,561...49,459,969
Ensembl chr 9:49,419,340...49,588,540
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Stat3
signal transducer and activator of transcription 3
IMP IDA
protein:increased phosphorylation:brain
RGD
PMID:21596098 PMID:22145815 PMID:22827467
RGD:6483023 , RGD:8694312 , RGD:6892706
NCBI chr10:85,811,206...85,863,057
Ensembl chr10:85,811,218...85,863,057
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Strn
striatin
IEP
RGD
PMID:16351572
RGD:2311293
NCBI chr 6:16,335,265...16,422,159
Ensembl chr 6:16,335,358...16,417,083
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Tardbp
TAR DNA binding protein
ISO
RGD
PMID:22101322
RGD:5687195
NCBI chr 5:159,050,518...159,062,218
Ensembl chr 5:159,051,799...159,062,055
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Tf
transferrin
IEP
RGD
PMID:22538758
RGD:7244386
NCBI chr 8:103,789,780...103,816,487
Ensembl chr 8:103,767,995...103,816,511
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Th
tyrosine hydroxylase
IEP
protein:decreased activity:striatum (rat)
RGD
PMID:21047500
RGD:5128822
NCBI chr 1:198,071,500...198,078,832
Ensembl chr 1:198,071,503...198,109,767
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Thbd
thrombomodulin
onset
ISO
RGD
PMID:17895610
RGD:5685007
NCBI chr 3:135,863,366...135,867,018
Ensembl chr 3:135,862,835...135,867,193
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Ticam2
TIR domain containing adaptor molecule 2
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:21549006
NCBI chr18:39,289,902...39,311,462
Ensembl chr18:39,294,453...39,311,462
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Timp1
TIMP metallopeptidase inhibitor 1
IEP
mRNA:increased expression:brain, astrocytes
RGD
PMID:10719361
RGD:2290468
NCBI chr X:1,212,969...1,217,714
Ensembl chr X:1,212,972...1,217,664
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Timp2
TIMP metallopeptidase inhibitor 2
IEP
mRNA:increased expression:brain, neuron, microglial cell
RGD
PMID:10719361
RGD:2290468
NCBI chr10:103,541,199...103,590,611
Ensembl chr10:103,531,505...103,590,611
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Tjp1
tight junction protein 1
IEP
RGD
PMID:19889224
RGD:2325128
NCBI chr 1:118,849,838...119,094,492
Ensembl chr 1:118,849,838...119,094,432
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Tlr1
toll-like receptor 1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:21549006
NCBI chr14:43,384,127...43,396,765
Ensembl chr14:43,384,932...43,397,125
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Tlr2
toll-like receptor 2
IEP ISO
mRNA:increased expression:brain CTD Direct Evidence: marker/mechanism
CTD RGD
PMID:21549006 PMID:18316784
RGD:2312713
NCBI chr 2:169,200,620...169,206,819
Ensembl chr 2:169,197,419...169,206,630
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Tlr4
toll-like receptor 4
IEP ISO
mRNA:increased expression:brain CTD Direct Evidence: marker/mechanism
CTD RGD
PMID:21549006 PMID:18316784
RGD:2312713
NCBI chr 5:80,145,867...80,159,501
Ensembl chr 5:80,145,826...80,159,628
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Tlr9
toll-like receptor 9
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:21549006
NCBI chr 8:106,864,680...106,868,796
Ensembl chr 8:106,864,680...106,868,796
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Tnf
tumor necrosis factor
ISO IMP
CTD Direct Evidence: marker/mechanism
CTD RGD
PMID:19800810 PMID:21549006 PMID:10674461
RGD:13825262
NCBI chr20:3,622,011...3,624,629
Ensembl chr20:3,622,011...3,624,629
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Tnfrsf13b
TNF receptor superfamily member 13B
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:23159883
NCBI chr10:45,801,860...45,824,932
Ensembl chr10:45,801,860...45,822,987
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Tnfrsf13c
TNF receptor superfamily member 13C
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:23159883
NCBI chr 7:113,736,046...113,738,523
Ensembl chr 7:113,736,055...113,738,517
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Tnfrsf14
TNF receptor superfamily member 14
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:23159883
NCBI chr 5:165,486,069...165,494,421
Ensembl chr 5:165,484,262...165,493,703
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Tnfrsf1a
TNF receptor superfamily member 1A
IEP ISO
protein:increased expression:brain CTD Direct Evidence: marker/mechanism
CTD RGD
PMID:21549006 PMID:17074049
RGD:1624183
NCBI chr 4:158,150,815...158,163,592
Ensembl chr 4:158,150,820...158,163,591
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Tnfsf10
TNF superfamily member 10
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:23159883
NCBI chr 2:110,199,835...110,227,239
Ensembl chr 2:110,207,916...110,225,135
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Tnfsf12
TNF superfamily member 12
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:23159883
NCBI chr10:54,403,870...54,413,213
Ensembl chr10:54,403,870...54,413,213
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Traf4
Tnf receptor associated factor 4
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:23159883
NCBI chr10:63,054,169...63,060,284
Ensembl chr10:63,054,181...63,060,284
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Trpm2
transient receptor potential cation channel, subfamily M, member 2
IEP
mRNA, protein:increased expression:cerebral cortex, hippocampus
RGD
PMID:20309649
RGD:9999437
NCBI chr20:10,703,568...10,753,189
Ensembl chr20:10,707,014...10,753,181
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Uba52
ubiquitin A-52 residue ribosomal protein fusion product 1
IEP
mRNA:decreased expression:cerebral cortex, hippocampus (rat)
RGD
PMID:17936732
RGD:11041870
NCBI chr16:18,918,614...18,920,807
Ensembl chr16:18,900,616...18,920,807
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Ucp2
uncoupling protein 2
ISO
CTD Direct Evidence: therapeutic
CTD RGD
PMID:12858170 PMID:12858170
RGD:7204436
NCBI chr 1:154,839,242...154,845,612
Ensembl chr 1:154,839,209...154,845,611
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Vegfa
vascular endothelial growth factor A
IEP ISO
CTD Direct Evidence: therapeutic
CTD RGD
PMID:18065154 PMID:12230324
RGD:1580574
NCBI chr 9:14,955,300...14,970,641
Ensembl chr 9:14,955,300...14,970,641
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Vegfb
vascular endothelial growth factor B
IEP
mRNA, protein:increased expression:brain
RGD
PMID:12230324
RGD:1580574
NCBI chr 1:204,172,297...204,178,046
Ensembl chr 1:204,172,225...204,177,944
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Vim
vimentin
ISO IEP
protein:increased expression:brain
RGD
PMID:19728994 PMID:15527750
RGD:6480519 , RGD:6480527
NCBI chr17:76,668,701...76,677,186
Ensembl chr17:76,668,647...76,677,187
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Xdh
xanthine dehydrogenase
treatment
IEP
RGD
PMID:26528358
RGD:13208950
NCBI chr 6:21,530,463...21,592,172
Ensembl chr 6:21,530,113...21,592,268
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Ldlr
low density lipoprotein receptor
ISO
ClinVar Annotator: match by term: Carotid artery dissection
ClinVar
PMID:1301956 PMID:2088165 PMID:2318961 PMID:3263645 PMID:8882879 PMID:9157944 PMID:9484998 PMID:10782930 PMID:10978268 PMID:12837857 PMID:16183066 PMID:16250003 PMID:17094996 PMID:17765246 PMID:18677035 PMID:19318025 PMID:20506408 PMID:21310417 PMID:21475731 PMID:21722902 PMID:22390909 PMID:22698793 PMID:23375686 PMID:25741868 PMID:27765764 PMID:28492532 PMID:29261184 PMID:29399563 PMID:31345425 PMID:34906454 More...
NCBI chr 8:20,270,020...20,292,981
Ensembl chr 8:20,270,041...20,294,580
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Mylk
myosin light chain kinase
ISO
ClinVar Annotator: match by term: Carotid artery dissection
ClinVar
PMID:25326637 PMID:25741868 PMID:28492532 PMID:30755392
NCBI chr11:65,783,008...66,030,239
Ensembl chr11:65,783,008...66,030,261
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Ldlr
low density lipoprotein receptor
ISO
ClinVar Annotator: match by term: Internal carotid artery dissection
ClinVar
PMID:1301956 PMID:2088165 PMID:2318961 PMID:3263645 PMID:8882879 PMID:9157944 PMID:9484998 PMID:10782930 PMID:10978268 PMID:12837857 PMID:16183066 PMID:16250003 PMID:17094996 PMID:17765246 PMID:18677035 PMID:19318025 PMID:20506408 PMID:21310417 PMID:21475731 PMID:21722902 PMID:22390909 PMID:22698793 PMID:23375686 PMID:25741868 PMID:27765764 PMID:28492532 PMID:29261184 PMID:29399563 PMID:31345425 PMID:34906454 More...
NCBI chr 8:20,270,020...20,292,981
Ensembl chr 8:20,270,041...20,294,580
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Mylk
myosin light chain kinase
ISO
ClinVar Annotator: match by term: Internal carotid artery dissection
ClinVar
PMID:25326637 PMID:25741868 PMID:28492532 PMID:30755392
NCBI chr11:65,783,008...66,030,239
Ensembl chr11:65,783,008...66,030,261
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Acta2
actin alpha 2, smooth muscle
ISO
protein:decreased expression:vascular smooth muscle cell carotid artery (mouse)
RGD
PMID:25751394
RGD:329328927
NCBI chr 1:231,746,527...231,759,307
Ensembl chr 1:231,746,548...231,759,554
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Acvr1
activin A receptor type 1
IEP
mRNA:increased expression:carotic artery (rat)
RGD
PMID:9622270
RGD:329845558
NCBI chr 3:42,978,558...43,097,892
Ensembl chr 3:42,978,561...43,098,241
G
Ager
advanced glycosylation end product-specific receptor
IMP
RGD
PMID:21680901
RGD:7245963
NCBI chr20:4,148,150...4,151,361
Ensembl chr20:4,147,890...4,151,078
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Agtr1a
angiotensin II receptor, type 1a
treatment
IEP
mRNA:increased expression:artery:
RGD
PMID:9918604
RGD:10047106
NCBI chr17:34,173,446...34,226,892
Ensembl chr17:34,174,429...34,226,946
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Alox12
arachidonate 12-lipoxygenase, 12S type
IEP
RGD
PMID:16118253
RGD:5509614
NCBI chr10:54,958,263...54,970,542
Ensembl chr10:54,958,271...54,970,542
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Carmn
cardiac mesoderm enhancer-associated non-coding RNA
IEP
mRNA:decreased expression:carotid artery:
RGD
PMID:34694145
RGD:155883160
NCBI chr18:55,097,848...55,118,769
Ensembl chr18:55,095,230...55,118,825
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Cbl
Cbl proto-oncogene
IEP
protein:hyperphosphorylation:tyrosine:
RGD
PMID:18663086
RGD:11038825
NCBI chr 8:44,487,824...44,571,620
Ensembl chr 8:44,489,410...44,571,176
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Ccl2
C-C motif chemokine ligand 2
treatment
ISO IDA
human gene in rat model
RGD
PMID:12223446 PMID:15353495
RGD:8549774 , RGD:11526152
NCBI chr10:67,005,424...67,007,222
Ensembl chr10:67,005,424...67,007,226
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Ccn2
cellular communication network factor 2
IEP
protein:increased expression:arterial wall (rat)
RGD
PMID:19570811
RGD:2314490
NCBI chr 1:20,802,199...20,805,315
Ensembl chr 1:20,802,199...20,805,734
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Ccna2
cyclin A2
IEP
mRNA:increased expression:artery:
RGD
PMID:18667424
RGD:10054494
NCBI chr 2:119,427,239...119,433,645
Ensembl chr 2:119,426,089...119,433,577
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Cflar
CASP8 and FADD-like apoptosis regulator
disease_progression
IEP
RGD
PMID:10623660
RGD:11341688
NCBI chr 9:60,185,338...60,236,173
Ensembl chr 9:60,185,452...60,237,034
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Csf1r
colony stimulating factor 1 receptor
IEP
mRNA, protein:increased expression: carotid artery endothelium (rat)
RGD
PMID:27135205
RGD:151665776
NCBI chr18:54,546,673...54,590,418
Ensembl chr18:54,546,659...54,590,415
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Csf3
colony stimulating factor 3
IEP
protein:increased expression:smooth muscle cell:
RGD
PMID:15385271
RGD:11039423
NCBI chr10:83,660,787...83,664,569
Ensembl chr10:83,661,207...83,663,603
G
Dusp1
dual specificity phosphatase 1
IEP
RGD
PMID:9546380
RGD:7771579
NCBI chr10:16,680,478...16,683,275
G
Foxo3
forkhead box O3
IEP
RGD
PMID:15662024
RGD:10402197
NCBI chr20:45,669,708...45,764,606
Ensembl chr20:45,672,995...45,764,561
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Gc
GC, vitamin D binding protein
IEP
protein:decreased expression:plasma
RGD
PMID:21416056
RGD:5509868
NCBI chr14:18,632,146...18,667,563
Ensembl chr14:18,632,135...18,667,567
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Gp6
glycoprotein VI
treatment
ISO
human protein in a mouse model
RGD
PMID:18566102
RGD:401824643
NCBI chr 1:69,429,232...69,492,709
Ensembl chr 1:69,465,789...69,491,326
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H19
H19 imprinted maternally expressed transcript
ameliorates
IEP
RGD
PMID:34487706
RGD:156430326
NCBI chr 1:197,730,698...197,733,374
Ensembl chr 1:197,730,698...197,733,134
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Hdac4
histone deacetylase 4
IEP
protein:increased expression:carotid artery:
RGD
PMID:19389706
RGD:9681448
NCBI chr 9:92,503,467...92,750,164
Ensembl chr 9:92,507,611...92,750,164
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Hey1
hes-related family bHLH transcription factor with YRPW motif 1
IEP
RGD
PMID:11971902
RGD:625426
NCBI chr 2:93,096,605...93,100,316
Ensembl chr 2:93,095,498...93,100,312
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Hey2
hes-related family bHLH transcription factor with YRPW motif 2
IEP
RGD
PMID:11971902
RGD:625426
NCBI chr 1:26,822,131...26,832,218
Ensembl chr 1:26,822,131...26,832,218
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Heyl
hes-related family bHLH transcription factor with YRPW motif-like
IEP
RGD
PMID:11971902
RGD:625426
NCBI chr 5:135,508,160...135,525,152
Ensembl chr 5:135,508,160...135,525,152
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Hp
haptoglobin
IEP
RGD
PMID:19012726
RGD:11041814
NCBI chr19:37,539,626...37,544,178
Ensembl chr19:37,539,627...37,544,523
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Icam1
intercellular adhesion molecule 1
IEP
mRNA:increased expression:carotid artery (rat)
RGD
PMID:20368503
RGD:4145429
NCBI chr 8:19,553,063...19,565,438
Ensembl chr 8:19,553,645...19,565,438
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Igf1
insulin-like growth factor 1
ISO
protein:increased expression:serum,carotid artery:
RGD
PMID:12490968
RGD:10046051
NCBI chr 7:22,282,895...22,361,972
Ensembl chr 7:22,282,930...22,359,296
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Igf1r
insulin-like growth factor 1 receptor
treatment
IEP
protein:increased phosphorylation:carotid artery:
RGD
PMID:17606126
RGD:10046006
NCBI chr 1:121,549,831...121,838,548
Ensembl chr 1:121,550,743...121,831,777
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Il18
interleukin 18
IMP IEP
protein:increased expression:carotid artery
RGD
PMID:16864728 PMID:19955748
RGD:4889500 , RGD:4889159
NCBI chr 8:50,904,630...50,932,887
Ensembl chr 8:50,906,960...50,932,887
G
Il1rn
interleukin 1 receptor antagonist
ISO
human gene in rat model
RGD
PMID:12754378
RGD:2316108
NCBI chr 3:7,111,567...7,127,451
Ensembl chr 3:7,111,550...7,127,445
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Itgav
integrin subunit alpha V
IEP
mRNA:increased expression:carotic artery (rat)
RGD
PMID:9622270
RGD:329845558
NCBI chr 3:68,838,514...68,926,653
Ensembl chr 3:68,838,189...68,926,639
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Itgb3
integrin subunit beta 3
IEP
protein:increased expression:carotid artery mRNA:increased expression:carotic artery (rat)
RGD
PMID:17868879 PMID:9622270
RGD:4892652 , RGD:329845558
NCBI chr10:89,509,917...89,564,679
Ensembl chr10:89,509,989...89,564,679
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Jag1
jagged canonical Notch ligand 1
IEP
protein:increased expression:carotid artery
RGD
PMID:21330605
RGD:6482230
NCBI chr 3:124,406,783...124,442,220
Ensembl chr 3:124,406,794...124,442,209
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Klf4
KLF transcription factor 4
ameliorates
IMP
RGD
PMID:29127880
RGD:155230825
NCBI chr 5:70,278,843...70,283,751
Ensembl chr 5:70,278,972...70,283,602
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Map3k5
mitogen-activated protein kinase kinase kinase 5
IEP
protein:increased activity:carotid artery:
RGD
PMID:14638553
RGD:10412321
NCBI chr 1:14,685,776...14,904,935
Ensembl chr 1:14,685,492...14,904,800
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Mir126b
microRNA 126b
exacerbates
ISO
RGD
PMID:24584117
RGD:401850548
NCBI chr 3:9,415,087...9,415,159
G
Mir145
microRNA 145
IEP
miRNA:altered expression:wall of blood vessel (rat)
RGD
PMID:19542014
RGD:13210556
NCBI chr18:55,099,640...55,099,727
Ensembl chr18:55,099,640...55,099,727
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Mir223
microRNA 223
IEP
RNA:increased expression:carotid artery
RGD
PMID:26065992
RGD:25824846
NCBI chr X:61,141,887...61,141,996
Ensembl chr X:61,141,887...61,141,996
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Mmp2
matrix metallopeptidase 2
IEP
RGD
PMID:9327785
RGD:8547910
NCBI chr19:14,154,657...14,182,870
Ensembl chr19:14,154,657...14,182,870
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Mmp3
matrix metallopeptidase 3
IEP
RGD
PMID:9327785
RGD:8547910
NCBI chr 8:4,640,397...4,653,963
Ensembl chr 8:4,640,416...4,653,961
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Mmp9
matrix metallopeptidase 9
IEP
RGD
PMID:9327785
RGD:8547910
NCBI chr 3:153,684,158...153,692,118
Ensembl chr 3:153,683,858...153,692,120
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Myc
MYC proto-oncogene, bHLH transcription factor
treatment
IDA IMP IEP
mRNA:increased expression:carotid artery (rat)
RGD
PMID:23178522 PMID:8113414 PMID:22546228
RGD:7207861 , RGD:10059612 , RGD:7240535
NCBI chr 7:93,593,705...93,598,633
Ensembl chr 7:93,593,705...93,598,630
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Myh9
myosin, heavy chain 9
IEP
protein:increased expression:carotid artery:
RGD
PMID:11003588
RGD:11533926
NCBI chr 7:109,343,718...109,424,457
Ensembl chr 7:109,343,706...109,424,457
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Nono
non-POU domain containing, octamer-binding
ameliorates
ISO
RGD
PMID:33626912
RGD:155900763
NCBI chr X:66,554,131...66,571,992
Ensembl chr X:66,554,098...66,571,952
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Nos3
nitric oxide synthase 3
treatment
IEP
RGD
PMID:29207649
RGD:13504723
NCBI chr 4:10,793,834...10,814,170
Ensembl chr 4:10,793,834...10,814,166
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Notch1
notch receptor 1
IEP
RGD
PMID:11971902
RGD:625426
NCBI chr 3:9,277,955...9,323,531
Ensembl chr 3:9,278,086...9,323,531
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Notch2
notch receptor 2
IEP
RGD
PMID:11971902
RGD:625426
NCBI chr 2:185,610,594...185,744,088
Ensembl chr 2:185,610,589...185,744,088
G
Notch3
notch receptor 3
IEP
RGD
PMID:11971902
RGD:625426
NCBI chr 7:11,132,984...11,184,025
Ensembl chr 7:11,133,706...11,184,025
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Parp1
poly (ADP-ribose) polymerase 1
IEP
protein:increased expression:blood vessel:
RGD
PMID:15044192
RGD:10413907
NCBI chr13:92,307,593...92,339,406
Ensembl chr13:92,307,586...92,339,404
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Pcna
proliferating cell nuclear antigen
ISO
protein:increased expression:vascular smooth muscle cell carotid artery (mouse)
RGD
PMID:25751394
RGD:329328927
NCBI chr 3:119,499,039...119,502,911
Ensembl chr 3:119,498,810...119,502,995
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Pcsk5
proprotein convertase subtilisin/kexin type 5
IEP
mRNA,protein:increased expression:artery:
RGD
PMID:12649739
RGD:11556213
NCBI chr 1:214,837,847...215,267,626
Ensembl chr 1:214,837,927...215,267,600
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Pdgfd
platelet derived growth factor D
IEP
protein:increased expression:carotid artery:
RGD
PMID:18258854
RGD:9854624
NCBI chr 8:3,488,448...3,722,395
Ensembl chr 8:3,488,423...3,722,395
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Plat
plasminogen activator, tissue type
IEP
mRNA, protein:increased expression, increased activity:carotid artery (rat)
RGD
PMID:8343497
RGD:11537479
NCBI chr16:69,240,582...69,265,177
Ensembl chr16:69,240,585...69,268,223
G
Postn
periostin
IEP
mRNA,protein:increased expression:artery:
RGD
PMID:15514205
RGD:10040973
NCBI chr 2:138,527,714...138,559,098
Ensembl chr 2:138,527,696...138,559,099
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Pparg
peroxisome proliferator-activated receptor gamma
treatment
ISO
mouse gene in a rat model
RGD
PMID:19339015
RGD:8553019
NCBI chr 4:148,423,102...148,548,471
Ensembl chr 4:148,423,194...148,548,468
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Ppargc1a
PPARG coactivator 1 alpha
treatment
IDA ISO
mouse gene in a rat model
RGD
PMID:22892143 PMID:19553562
RGD:7242065 , RGD:2311405
NCBI chr14:58,860,752...59,516,525
Ensembl chr14:58,861,144...59,512,656
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Ptgis
prostaglandin I2 synthase
treatment
ISO IMP
human gene in a rat model
RGD
PMID:9933282 PMID:10073980 PMID:10536678 PMID:17303142
RGD:401901254 , RGD:401960092 , RGD:401959739 , RGD:401959382
NCBI chr 3:155,928,564...155,964,228
Ensembl chr 3:155,916,412...155,965,451
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Ptpn1
protein tyrosine phosphatase, non-receptor type 1
exacerbates
IMP IEP
mRNA:increased expression:carotid artery (rat) protein:increased expression:carotid artery (rat)
RGD
PMID:16373608 PMID:10807732 PMID:15271661
RGD:401965416 , RGD:9590128 , RGD:401965432
NCBI chr 3:156,638,811...156,687,503
Ensembl chr 3:156,638,769...156,687,504
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Ptpn11
protein tyrosine phosphatase, non-receptor type 11
IEP
protein:increased expression:aorta tunica intima, aorta tunica media
RGD
PMID:12117720
RGD:39456082
NCBI chr12:35,365,436...35,424,925
Ensembl chr12:35,383,144...35,424,925
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Rangap1
RAN GTPase activating protein 1
IEP
protein:increased expression:carotid artery, intima (rat)
RGD
PMID:24988324
RGD:9835414
NCBI chr 7:113,224,695...113,250,441
Ensembl chr 7:113,224,703...113,250,438
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Robo1
roundabout guidance receptor 1
IEP
mRNA:increased expression:carotid artery
RGD
PMID:26841069
RGD:243048443
NCBI chr11:10,580,863...11,621,675
Ensembl chr11:10,580,908...11,620,203
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Scgb1a1
secretoglobin family 1A member 1
IDA
RGD
PMID:11107082
RGD:5144055
NCBI chr 1:205,977,060...205,980,610
Ensembl chr 1:205,977,060...205,980,610
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Serpine1
serpin family E member 1
IEP
mRNA:increased expression:carotid artery (rat)
RGD
PMID:25617690
RGD:11075082
NCBI chr12:19,601,272...19,611,657
Ensembl chr12:19,601,272...19,611,657
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Serpinf1
serpin family F member 1
treatment
ISO
human gene in a rat model
RGD
PMID:17525281
RGD:8618841
NCBI chr10:60,250,198...60,262,593
Ensembl chr10:60,249,708...60,262,646
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Slit2
slit guidance ligand 2
IEP
mRNA:increased expression:carotid artery
RGD
PMID:26841069
RGD:243048443
NCBI chr14:62,616,337...62,955,934
Ensembl chr14:62,617,067...62,955,948
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Sp1
Sp1 transcription factor
IEP
protein:increased phosphorylation:smooth muscle cell:
RGD
PMID:18258854
RGD:9854624
NCBI chr 7:133,541,302...133,571,961
Ensembl chr 7:133,541,491...133,571,961
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Spon2
spondin 2
ISO
protein:decreased expression:vascular smooth muscle cell carotid artery (mouse)
RGD
PMID:25751394
RGD:329328927
NCBI chr14:77,505,695...77,518,001
Ensembl chr14:77,511,901...77,517,996
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Tagln
transgelin
IEP
mRNA:decreased expression:carotid artery:
RGD
PMID:34694145
RGD:155883160
NCBI chr 8:46,224,939...46,230,413
Ensembl chr 8:46,222,472...46,230,668
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Tfpi2
tissue factor pathway inhibitor 2
IEP
mRNA,protein:increased expression:carotid artery:
RGD
PMID:20537494
RGD:11060271
NCBI chr 4:31,981,786...31,986,707
Ensembl chr 4:31,982,178...31,986,600
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Tgfb1
transforming growth factor, beta 1
IEP
mRNA:increased expression:carotic artery (rat)
RGD
PMID:9622270
RGD:329845558
NCBI chr 1:81,196,532...81,212,848
Ensembl chr 1:81,196,532...81,212,847
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Tgfb3
transforming growth factor, beta 3
IEP
mRNA:increased expression:carotic artery (rat)
RGD
PMID:9622270
RGD:329845558
NCBI chr 6:105,704,058...105,726,661
Ensembl chr 6:105,704,236...105,726,564
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Tgfbr1
transforming growth factor, beta receptor 1
IEP
mRNA:increased expression:carotic artery (rat)
RGD
PMID:9622270
RGD:329845558
NCBI chr 5:61,653,773...61,710,777
Ensembl chr 5:61,653,233...61,710,777
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Tgfbr2
transforming growth factor, beta receptor 2
IEP
mRNA:increased expression:carotic artery (rat)
RGD
PMID:9622270
RGD:329845558
NCBI chr 8:115,794,537...115,883,615
Ensembl chr 8:115,794,537...115,883,228
G
Phactr1
phosphatase and actin regulator 1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:25420145
NCBI chr17:21,560,364...22,040,166
Ensembl chr17:21,562,721...22,039,831
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Apoe
apolipoprotein E
susceptibility
ISO
DNA:polymorphism:exon:
RGD
PMID:9214529
RGD:7495763
NCBI chr 1:79,353,924...79,357,852
Ensembl chr 1:79,353,916...79,357,932
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Tardbp
TAR DNA binding protein
ISO
protein:increased expression:brain
RGD
PMID:20720505
RGD:5687179
NCBI chr 5:159,050,518...159,062,218
Ensembl chr 5:159,051,799...159,062,055
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Becn1
beclin 1
ISO
protein:increased expression:neuron
RGD
PMID:16004578
RGD:6483315
NCBI chr10:86,231,387...86,246,742
Ensembl chr10:86,231,388...86,246,742
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Gfap
glial fibrillary acidic protein
IEP
RGD
PMID:8833197
RGD:6480531
NCBI chr10:87,852,891...87,861,631
Ensembl chr10:87,852,890...87,861,589
G
Got1
glutamic-oxaloacetic transaminase 1
ISO
human protein in a rat model
RGD
PMID:17014847
RGD:13504858
NCBI chr 1:242,357,293...242,381,535
Ensembl chr 1:242,357,306...242,380,633
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Igf1
insulin-like growth factor 1
ISO
protein:decreased expression:serum:
RGD
PMID:12002507
RGD:8548865
NCBI chr 7:22,282,895...22,361,972
Ensembl chr 7:22,282,930...22,359,296
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Igfbp3
insulin-like growth factor binding protein 3
ISO
protein:decreased expression:serum:
RGD
PMID:12002507
RGD:8548865
NCBI chr14:82,056,347...82,064,083
Ensembl chr14:82,056,347...82,064,083
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Vim
vimentin
IEP
RGD
PMID:8833197
RGD:6480531
NCBI chr17:76,668,701...76,677,186
Ensembl chr17:76,668,647...76,677,187
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Aldh3a1
aldehyde dehydrogenase 3 family, member A1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:28038895
NCBI chr10:45,892,993...45,902,680
Ensembl chr10:45,892,924...45,902,681
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Tp63
tumor protein p63
ISO
RGD
PMID:12167247
RGD:11568649
NCBI chr11:74,838,858...75,049,764
Ensembl chr11:74,838,859...75,049,398
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Ifng
interferon gamma
ISO
mRNA,protein:increased expression:corneal
RGD
PMID:15832292
RGD:8157597
NCBI chr 7:53,903,339...53,907,375
Ensembl chr 7:53,903,337...53,907,375
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Bmp4
bone morphogenetic protein 4
IEP
mRNA:increased expression:superior cervical ganglion
RGD
PMID:16420416
RGD:2289006
NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
G
Cx3cl1
C-X3-C motif chemokine ligand 1
IEP
RGD
PMID:15153618
RGD:4891994
NCBI chr19:10,227,337...10,237,826
Ensembl chr19:10,227,340...10,236,833
G
Adnp
activity-dependent neuroprotector homeobox
ISO
RGD
PMID:11123362
RGD:2312784
NCBI chr 3:156,886,921...156,921,500
Ensembl chr 3:156,891,381...156,917,312
G
Il1a
interleukin 1 alpha
ISO
protein:increased expression:microglial cell
RGD
PMID:7830934
RGD:10045949
NCBI chr 3:116,526,601...116,537,055
Ensembl chr 3:116,526,604...116,536,822
G
Postn
periostin
IEP
RGD
PMID:17878602
RGD:10041014
NCBI chr 2:138,527,714...138,559,098
Ensembl chr 2:138,527,696...138,559,099
G
Serpinc1
serpin family C member 1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:8810955
NCBI chr13:73,257,208...73,271,476
Ensembl chr13:73,257,179...73,284,293
G
S100b
S100 calcium binding protein B
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:30076900
NCBI chr20:12,372,866...12,381,619
Ensembl chr20:12,372,881...12,394,743
G
Il10
interleukin 10
treatment
IDA
RGD
PMID:22553604
RGD:7364851
NCBI chr13:42,472,625...42,477,308
Ensembl chr13:42,472,839...42,477,313
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Il1b
interleukin 1 beta
ISO
protein:increased expression:retina
RGD
PMID:9618720
RGD:7794723
NCBI chr 3:116,577,005...116,583,386
Ensembl chr 3:116,577,010...116,583,415
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Pparg
peroxisome proliferator-activated receptor gamma
IEP
protein:increased expression:cornea, neutrophil, macrophage (rat)
RGD
PMID:24194635
RGD:8552904
NCBI chr 4:148,423,102...148,548,471
Ensembl chr 4:148,423,194...148,548,468
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Fgf2
fibroblast growth factor 2
ISO IEP
protein:increased expression:lens
RGD
PMID:15273655 PMID:15273655
RGD:8655664 , RGD:8655664
NCBI chr 2:120,236,328...120,290,673
Ensembl chr 2:120,236,328...120,291,221
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Mir183
microRNA 183
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:27208084
NCBI chr 4:58,788,614...58,788,723
Ensembl chr 4:58,788,614...58,788,723
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Mir96
microRNA 96
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:27208084
NCBI chr 4:58,788,411...58,788,516
Ensembl chr 4:58,788,411...58,788,516
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Pparg
peroxisome proliferator-activated receptor gamma
treatment
ISO
RGD
PMID:18658087
RGD:8552893
NCBI chr 4:148,423,102...148,548,471
Ensembl chr 4:148,423,194...148,548,468
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Adcyap1
adenylate cyclase activating polypeptide 1
IEP
mRNA:increased expression:facial VII nucleus
RGD
PMID:19427307
RGD:2325258
NCBI chr 9:113,102,632...113,122,500
Ensembl chr 9:113,103,718...113,109,773
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Atf2
activating transcription factor 2
IEP
RGD
PMID:9813301
RGD:10047413
NCBI chr 3:58,718,323...58,795,280
Ensembl chr 3:58,718,332...58,795,236
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Ccr3
C-C motif chemokine receptor 3
ISO
RGD
PMID:19922414
RGD:6892922
NCBI chr 8:123,586,100...123,634,178
Ensembl chr 8:123,616,236...123,634,990
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Cd59b
CD59b molecule
IEP
mRNA, protein:increased expression:facial VII nucleus
RGD
PMID:9846834
RGD:1600495
NCBI chr 3:90,459,085...90,477,571
Ensembl chr 3:90,459,162...90,478,847
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Csf1
colony stimulating factor 1
IEP
protein:increased expression:facial VII nerve, microglial cell
RGD
PMID:20831658
RGD:5131509
NCBI chr 2:195,377,215...195,396,608
Ensembl chr 2:195,377,215...195,411,704
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Ctss
cathepsin S
ISO
RGD
PMID:17539023
RGD:5686912
NCBI chr 2:183,086,437...183,114,483
Ensembl chr 2:183,086,437...183,114,483
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Gfra1
GDNF family receptor alpha 1
IEP
mRNA:increased expression:facial VII nucleus
RGD
PMID:9582449
RGD:6218984
NCBI chr 1:257,315,682...257,552,004
Ensembl chr 1:257,321,742...257,551,473
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Hgf
hepatocyte growth factor
treatment
IDA
RGD
PMID:21562589
RGD:8548634
NCBI chr 4:18,673,736...18,745,582
Ensembl chr 4:18,677,101...18,745,409
G
Mt3
metallothionein 3
treatment
IDA
RGD
PMID:14625437
RGD:9685806
NCBI chr19:10,848,754...10,850,158
Ensembl chr19:10,848,755...10,850,158
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Ndufa5
NADH:ubiquinone oxidoreductase subunit A5
IEP
mRNA:increased expression:skeletal muscle
RGD
PMID:8875451
RGD:2302319
NCBI chr 4:52,997,327...53,005,685
Ensembl chr 4:52,995,546...53,005,598
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Ret
ret proto-oncogene
IEP
mRNA:increased expression:facial VII nucleus
RGD
PMID:9582449
RGD:6218984
NCBI chr 4:151,325,969...151,368,176
Ensembl chr 4:151,326,431...151,368,176
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Acvr1b
activin A receptor type 1B
IEP
RGD
PMID:9013782
RGD:151665480
NCBI chr 7:132,286,266...132,329,679
Ensembl chr 7:132,286,275...132,329,673
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Adamts1
ADAM metallopeptidase with thrombospondin type 1 motif, 1
IEP
mRNA:increased expression:hypoglossal nerve
RGD
PMID:11311987
RGD:5037239
NCBI chr11:24,932,227...24,941,068
Ensembl chr11:24,931,761...24,941,103
G
Aif1
allograft inflammatory factor 1
IEP
RGD
PMID:9698327
RGD:704401
NCBI chr20:3,646,784...3,652,670
Ensembl chr20:3,646,777...3,652,668
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Csnk2b
casein kinase 2 beta
IEP
RGD
PMID:11068334
RGD:11565824
NCBI chr20:3,700,363...3,705,331
Ensembl chr20:3,698,733...3,707,133
G
Fgf2
fibroblast growth factor 2
IEP
RGD
PMID:9183688
RGD:8655640
NCBI chr 2:120,236,328...120,290,673
Ensembl chr 2:120,236,328...120,291,221
G
Fgfr1
Fibroblast growth factor receptor 1
IEP
RGD
PMID:9183688
RGD:8655640
NCBI chr16:66,491,930...66,547,161
Ensembl chr16:66,494,042...66,547,350
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Gfra1
GDNF family receptor alpha 1
IEP
mRNA:increased expression:hypoglossal XII nerve
RGD
PMID:10407179
RGD:6218979
NCBI chr 1:257,315,682...257,552,004
Ensembl chr 1:257,321,742...257,551,473
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Il1r1
interleukin 1 receptor type 1
IEP
mRNA:increased expression:hypoglossal nerve
RGD
PMID:11311987
RGD:5037239
NCBI chr 9:42,504,917...42,580,958
Ensembl chr 9:42,504,735...42,579,937
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Mcam
melanoma cell adhesion molecule
IEP
RGD
PMID:10076889
RGD:7364787
NCBI chr 8:44,479,391...44,487,575
Ensembl chr 8:44,479,376...44,487,571
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Mme
membrane metallo-endopeptidase
IEP
RGD
PMID:8201016
RGD:13801045
NCBI chr 2:147,686,913...147,803,808
Ensembl chr 2:147,722,086...147,803,792
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Prkaca
protein kinase cAMP-activated catalytic subunit alpha
IEP
RGD
PMID:7769990
RGD:7327191
NCBI chr19:24,155,081...24,178,430
Ensembl chr19:24,155,090...24,178,430
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Prkacb
protein kinase cAMP-activated catalytic subunit beta
IEP
RGD
PMID:7769990
RGD:7327191
NCBI chr 2:235,636,878...235,726,928
Ensembl chr 2:235,636,885...235,726,198
G
Ret
ret proto-oncogene
IEP
mRNA:increased expression:hypoglossal XII nerve
RGD
PMID:10407179
RGD:6218979
NCBI chr 4:151,325,969...151,368,176
Ensembl chr 4:151,326,431...151,368,176
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Smad1
SMAD family member 1
IEP
mRNA:increased expression:hypoglossal nucleus
RGD
PMID:17166487
RGD:1643227
NCBI chr19:28,513,130...28,573,665
Ensembl chr19:28,513,131...28,573,651
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Smad2
SMAD family member 2
IEP
mRNA:increased expression:hypoglossal nucleus
RGD
PMID:17166487
RGD:1643227
NCBI chr18:69,849,884...69,918,926
Ensembl chr18:69,850,377...69,912,323
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Smad3
SMAD family member 3
IEP
mRNA:increased expression:hypoglossal nucleus
RGD
PMID:17166487
RGD:1643227
NCBI chr 8:64,126,829...64,236,960
Ensembl chr 8:64,110,039...64,236,960
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Smad4
SMAD family member 4
IEP
mRNA:increased expression:hypoglossal nucleus
RGD
PMID:17166487
RGD:1643227
NCBI chr18:67,243,742...67,274,438
Ensembl chr18:67,243,742...67,274,438
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Smad7
SMAD family member 7
IEP
mRNA:increased expression:hypoglossal nucleus
RGD
PMID:17166487
RGD:1643227
NCBI chr18:68,988,429...69,016,774
Ensembl chr18:68,988,429...69,016,765
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Smad9
SMAD family member 9
IEP
mRNA:decreased expression:hypoglossal nucleus
RGD
PMID:17166487
RGD:1643227
NCBI chr 2:138,956,326...139,006,315
Ensembl chr 2:138,986,471...139,006,307
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Txnrd1
thioredoxin reductase 1
IEP
mRNA, protein:increased expression:neuron
RGD
PMID:19833109
RGD:5133729
NCBI chr 7:20,830,042...20,914,990
Ensembl chr 7:20,830,045...20,907,863
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Gp6
glycoprotein VI
exacerbates
ISO
RGD
PMID:21258336
RGD:401824683
NCBI chr 1:69,429,232...69,492,709
Ensembl chr 1:69,465,789...69,491,326
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Mdm2
MDM2 proto-oncogene
treatment
IMP
RGD
PMID:34334113
RGD:155882538
NCBI chr 7:53,290,660...53,315,205
Ensembl chr 7:53,290,664...53,314,915
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Zeb2
zinc finger E-box binding homeobox 2
treatment
IMP IEP
protein:increased expression:brain (rat)
RGD
PMID:34334113 PMID:34334113
RGD:155882538 , RGD:155882538
NCBI chr 3:29,214,581...29,344,890
Ensembl chr 3:29,218,301...29,345,157
G
Cited2
Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2
IEP
mRNA:decreased expression:bone
RGD
PMID:19607804
RGD:5147852
NCBI chr 1:12,312,426...12,314,869
Ensembl chr 1:12,312,160...12,314,897
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Ihh
Indian hedgehog signaling molecule
IEP
RGD
PMID:23992905
RGD:12911207
NCBI chr 9:76,504,315...76,510,532
Ensembl chr 9:76,504,315...76,510,532
G
Ntrk2
neurotrophic receptor tyrosine kinase 2
IEP
mRNA:increased expression:motor neuron
RGD
PMID:21456016
RGD:5684341
NCBI chr17:5,558,992...5,870,299
Ensembl chr17:5,559,043...5,869,136
G
Adcy10
adenylate cyclase 10
IEP
protein:decreased expression:retina
RGD
PMID:22649251
RGD:329347828
NCBI chr13:77,747,752...77,833,952
Ensembl chr13:77,768,468...77,833,951
G
Adnp
activity-dependent neuroprotector homeobox
IDA
RGD
PMID:18414890
RGD:2312783
NCBI chr 3:156,886,921...156,921,500
Ensembl chr 3:156,891,381...156,917,312
G
Amigo3
adhesion molecule with Ig like domain 3
treatment
IEP
RGD
PMID:23613963
RGD:14390159
NCBI chr 8:108,741,899...108,743,425
Ensembl chr 8:108,693,060...108,744,555
G
Aqp4
aquaporin 4
IEP
RGD
PMID:20216911
RGD:2326035
NCBI chr18:6,507,903...6,524,558
Ensembl chr18:6,507,903...6,524,856
G
Aqp9
aquaporin 9
IEP
RGD
PMID:20216911
RGD:2326035
NCBI chr 8:71,797,231...71,837,485
Ensembl chr 8:71,797,234...71,837,395
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Arg2
arginase 2
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:30618589
NCBI chr 6:97,936,002...97,961,379
Ensembl chr 6:97,936,002...97,961,378
G
Atf2
activating transcription factor 2
IEP
RGD
PMID:10366744
RGD:10047417
NCBI chr 3:58,718,323...58,795,280
Ensembl chr 3:58,718,332...58,795,236
G
Bax
BCL2 associated X, apoptosis regulator
IEP
mRNA:increased expression:optic nerve, retina
RGD
PMID:24357921
RGD:10054098
NCBI chr 1:95,940,001...95,945,407
Ensembl chr 1:95,938,808...95,945,368
G
Bcl2
BCL2, apoptosis regulator
IEP
mRNA:decreased expression:optic nerve, retina
RGD
PMID:24357921
RGD:10054098
NCBI chr13:22,689,783...22,853,920
Ensembl chr13:22,684,989...22,853,743 Ensembl chr13:22,684,989...22,853,743
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Bdnf
brain-derived neurotrophic factor
treatment
ISO IEP
RGD
PMID:15140649 PMID:11050383 PMID:9520478
RGD:8655584 , RGD:8655586 , RGD:8655637
NCBI chr 3:96,165,042...96,215,621
Ensembl chr 3:96,165,042...96,215,615
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C3
complement C3
IEP
mRNA:increased expression:optic nerve
RGD
PMID:14577867
RGD:5129542
NCBI chr 9:2,087,437...2,114,366
Ensembl chr 9:2,087,437...2,114,429
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Cdk2
cyclin dependent kinase 2
IEP
mRNA:increased expression:retina
RGD
PMID:16723461
RGD:2293567
NCBI chr 7:1,129,878...1,137,431
Ensembl chr 7:1,129,811...1,137,403
G
Cfl1
cofilin 1
treatment
IDA
RGD
PMID:27443501
RGD:11568693
NCBI chr 1:202,796,012...202,801,337
Ensembl chr 1:202,786,627...202,817,587
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Clu
clusterin
IEP
RGD
PMID:14577867
RGD:5129542
NCBI chr15:40,161,068...40,200,315
Ensembl chr15:40,174,617...40,200,315
G
Csf1r
colony stimulating factor 1 receptor
IEP
mRNA:increased expression:retina (rat)
RGD
PMID:20187850
RGD:151665810
NCBI chr18:54,546,673...54,590,418
Ensembl chr18:54,546,659...54,590,415
G
Csf3
colony stimulating factor 3
treatment
ISO
RGD
PMID:20144610
RGD:11039471
NCBI chr10:83,660,787...83,664,569
Ensembl chr10:83,661,207...83,663,603
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Ctsb
cathepsin B
IEP
protein:increased expression:retina (rat)
RGD
PMID:18775855
RGD:2315508
NCBI chr15:37,389,636...37,410,508
Ensembl chr15:37,389,629...37,410,500
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Edn1
endothelin 1
IEP
protein:increased expression:retina
RGD
PMID:18600494
RGD:4892579
NCBI chr17:22,454,924...22,460,812
Ensembl chr17:22,454,420...22,460,885
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Ednra
endothelin receptor type A
IEP
mRNA:increased expression:retina
RGD
PMID:18600494
RGD:4892579
NCBI chr19:30,233,540...30,303,727
Ensembl chr19:30,233,571...30,297,049
G
Ednrb
endothelin receptor type B
IEP
mRNA:increased expression:retina
RGD
PMID:18600494
RGD:4892579
NCBI chr15:80,640,839...80,672,115
Ensembl chr15:80,643,043...80,672,115
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Ep300
E1A binding protein p300
IEP ISO
protein:decreased expression:retinal ganglion cell layer (rat) human gene in rat model
RGD
PMID:21705428 PMID:21705428
RGD:7349392 , RGD:7349392
NCBI chr 7:113,108,476...113,178,529
Ensembl chr 7:113,106,247...113,136,088 Ensembl chr 7:113,106,247...113,136,088
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Fgf2
fibroblast growth factor 2
treatment
ISO
RGD
PMID:14664816
RGD:8554854
NCBI chr 2:120,236,328...120,290,673
Ensembl chr 2:120,236,328...120,291,221
G
Fto
FTO, alpha-ketoglutarate dependent dioxygenase
IEP
mRNA:increased expression:retina
RGD
PMID:33664770
RGD:329951020
NCBI chr19:15,284,898...15,692,142
Ensembl chr19:15,349,696...15,692,083
G
Gdnf
glial cell derived neurotrophic factor
IEP
RGD
PMID:15144875
RGD:6218970
NCBI chr 2:56,894,022...56,919,935
Ensembl chr 2:56,895,010...56,917,209
G
Gfra1
GDNF family receptor alpha 1
IEP
RGD
PMID:15144875
RGD:6218970
NCBI chr 1:257,315,682...257,552,004
Ensembl chr 1:257,321,742...257,551,473
G
Gfra2
GDNF family receptor alpha 2
IEP
RGD
PMID:15144875
RGD:6218970
NCBI chr15:45,941,841...46,033,715
Ensembl chr15:45,941,828...46,033,714
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Hgf
hepatocyte growth factor
treatment
ISO
RGD
PMID:21443522
RGD:8548549
NCBI chr 4:18,673,736...18,745,582
Ensembl chr 4:18,677,101...18,745,409
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Igf1r
insulin-like growth factor 1 receptor
IMP IEP
protein: altered activity: eye protein:increased expression:retina:
RGD
PMID:19484445 PMID:23648097
RGD:5686431 , RGD:10046025
NCBI chr 1:121,549,831...121,838,548
Ensembl chr 1:121,550,743...121,831,777
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Jun
Jun proto-oncogene, AP-1 transcription factor subunit
IEP
RGD
PMID:10366744
RGD:10047417
NCBI chr 5:109,894,175...109,897,268
Ensembl chr 5:109,893,145...109,897,656
G
Kcnj10
potassium inwardly-rectifying channel, subfamily J, member 10
IEP
RGD
PMID:20216911
RGD:2326035
NCBI chr13:84,802,026...84,835,383
Ensembl chr13:84,802,009...84,835,461
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Mt-co1
mitochondrially encoded cytochrome c oxidase I
ISO
mRNA:increased expression:retina
RGD
PMID:12076086
RGD:8662362
NCBI chr MT:5,323...6,867 NCBI chr MT:5,323...6,867 NCBI chr MT:5,323...6,867
Ensembl chr MT:5,323...6,867
G
Myrf
myelin regulatory factor
IEP
mRNA:decreased expression: oligodendrocyte
RGD
PMID:29915135
RGD:213230153
NCBI chr 1:206,854,175...206,886,276
Ensembl chr 1:206,854,175...206,886,157
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Nampt
nicotinamide phosphoribosyltransferase
treatment
IMP
RGD
PMID:28032230
RGD:13781885
NCBI chr 6:49,425,316...49,462,109
Ensembl chr 6:49,424,332...49,462,100
G
Ncam1
neural cell adhesion molecule 1
ISO
RGD
PMID:18757519
RGD:2326023
NCBI chr 8:49,865,629...50,165,687
Ensembl chr 8:49,865,633...50,166,014
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Nefm
neurofilament medium chain
IEP
RGD
PMID:8501527
RGD:9743936
NCBI chr15:42,360,449...42,365,753
Ensembl chr15:42,360,454...42,365,755
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Neo1
neogenin 1
IEP
protein:increased expression:retina
RGD
PMID:21887516
RGD:9850142
NCBI chr 8:59,273,860...59,426,486
Ensembl chr 8:59,275,569...59,430,348
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Ngf
nerve growth factor
IEP
protein:increased expression:retina
RGD
PMID:28067793
RGD:402463954
NCBI chr 2:189,901,058...189,954,452
Ensembl chr 2:189,901,058...189,954,452
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Ngfr
nerve growth factor receptor
IDA
RGD
PMID:20943663
RGD:5508695
NCBI chr10:80,515,287...80,533,518
Ensembl chr10:80,515,299...80,533,518
G
Ntrk1
neurotrophic receptor tyrosine kinase 1
IDA
RGD
PMID:20943663
RGD:5508695
NCBI chr 2:173,236,961...173,253,806
Ensembl chr 2:173,236,963...173,253,770
G
Ntrk2
neurotrophic receptor tyrosine kinase 2
IDA
RGD
PMID:20357199
RGD:5684908
NCBI chr17:5,558,992...5,870,299
Ensembl chr17:5,559,043...5,869,136
G
Pawr
pro-apoptotic WT1 regulator
IEP
mRNA:increased expression:retina:
RGD
PMID:12836167
RGD:1299297
NCBI chr 7:43,645,028...43,725,033
Ensembl chr 7:43,645,084...43,725,028
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Pax6
paired box 6
IEP
protein:increased expression:retina (rat)
RGD
PMID:23297010
RGD:8552379
NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014
G
Pdgfb
platelet derived growth factor subunit B
IEP
protein:decreased expression:nerve fiber:
RGD
PMID:9893812
RGD:10449496
NCBI chr 7:111,539,444...111,557,984
Ensembl chr 7:111,540,345...111,557,984
G
Pecam1
platelet and endothelial cell adhesion molecule 1
IEP
protein:increased expression:optic nerve (rat)
RGD
PMID:22336118
RGD:6767293
NCBI chr10:91,590,521...91,652,279
Ensembl chr10:91,590,521...91,652,116
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Plau
plasminogen activator, urokinase
IEP
mRNA:increased expression:optic nerve (rat)
RGD
PMID:20798533
RGD:6483802
NCBI chr15:3,456,230...3,462,732
Ensembl chr15:3,456,232...3,462,775
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Ptpn5
protein tyrosine phosphatase, non-receptor type 5
IEP
protein:increased expression:retina (rat)
RGD
PMID:15555919
RGD:9835027
NCBI chr 1:97,620,638...97,681,186
Ensembl chr 1:97,620,642...97,679,882
G
Rhoa
ras homolog family member A
IEP
protein:increased expression, altered localization:retina
RGD
PMID:17534117
RGD:1642826
NCBI chr 8:108,991,926...109,025,746
Ensembl chr 8:108,991,954...109,025,746
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Snw1
SNW domain containing 1
IEP
protein:increased expression:retina (rat)
RGD
PMID:25074585
RGD:11035254
NCBI chr 6:107,095,450...107,119,536
Ensembl chr 6:107,095,457...107,119,536
G
Tlr4
toll-like receptor 4
ISO
protein:increased expression:optic nerve
RGD
PMID:23103505
RGD:7794777
NCBI chr 5:80,145,867...80,159,501
Ensembl chr 5:80,145,826...80,159,628
G
Tnfrsf1a
TNF receptor superfamily member 1A
IEP ISO
RGD
PMID:18552980 PMID:14697498
RGD:7794683 , RGD:8661743
NCBI chr 4:158,150,815...158,163,592
Ensembl chr 4:158,150,820...158,163,591
G
Tradd
TNFRSF1A-associated via death domain
IEP
protein:increased expression: retina
RGD
PMID:18552980
RGD:7794683
NCBI chr19:33,136,148...33,142,714
Ensembl chr19:33,136,138...33,142,638
G
Ybx3
Y box binding protein 3
IEP
mRNA:increased expression:retinal ganglion cell
RGD
PMID:11750989
RGD:2311250
NCBI chr 4:165,129,747...165,153,101
Ensembl chr 4:165,129,758...165,153,161
G
Fgf2
fibroblast growth factor 2
ISO
mRNA:increased expression:retina
RGD
PMID:9268592
RGD:8655567
NCBI chr 2:120,236,328...120,290,673
Ensembl chr 2:120,236,328...120,291,221
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Neo1
neogenin 1
IEP
protein:increased expression:retina
RGD
PMID:21887516
RGD:9850142
NCBI chr 8:59,273,860...59,426,486
Ensembl chr 8:59,275,569...59,430,348
G
Rgma
repulsive guidance molecule BMP co-receptor a
IEP
protein:increased expression:retina
RGD
PMID:21887516
RGD:9850142
NCBI chr 1:127,128,934...127,172,918
Ensembl chr 1:127,128,934...127,172,918
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Entpd1
ectonucleoside triphosphate diphosphohydrolase 1
IEP
protein:increased expression,increased activity:cerebral cortex:
RGD
PMID:16672190
RGD:9685448
NCBI chr 1:239,425,515...239,552,323
Ensembl chr 1:239,425,430...239,552,317
G
Fgfr1
Fibroblast growth factor receptor 1
IEP
mRNA,protein:increased expression:astrocyte,macrophage,neutrophil:
RGD
PMID:11168551
RGD:10402049
NCBI chr16:66,491,930...66,547,161
Ensembl chr16:66,494,042...66,547,350
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Gfap
glial fibrillary acidic protein
ISO
RGD
PMID:10225952
RGD:6480471
NCBI chr10:87,852,891...87,861,631
Ensembl chr10:87,852,890...87,861,589
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Pdgfb
platelet derived growth factor subunit B
IEP
protein:increased expression:neuron:
RGD
PMID:7526956
RGD:10449485
NCBI chr 7:111,539,444...111,557,984
Ensembl chr 7:111,540,345...111,557,984
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Vim
vimentin
ISO
RGD
PMID:10225952
RGD:6480471
NCBI chr17:76,668,701...76,677,186
Ensembl chr17:76,668,647...76,677,187
G
Ager
advanced glycosylation end product-specific receptor
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:25014009
NCBI chr20:4,148,150...4,151,361
Ensembl chr20:4,147,890...4,151,078
G
Ank3
ankyrin 3
IEP
mRNA:decreased expression:neuron
RGD
PMID:10915577
RGD:6767305
NCBI chr20:18,602,267...19,225,831
Ensembl chr20:18,602,786...19,086,300
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Apoa4
apolipoprotein A4
IEP
protein:increased expression:sciatic nerve (rat)
RGD
PMID:2120218
RGD:2311210
NCBI chr 8:46,539,083...46,541,464
Ensembl chr 8:46,539,082...46,541,469
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Apoe
apolipoprotein E
ISO IEP
mouse model treated with human peptide protein:increased expression:sciatic nerve (rat)
RGD
PMID:20406857 PMID:2419900
RGD:6906874 , RGD:6906875
NCBI chr 1:79,353,924...79,357,852
Ensembl chr 1:79,353,916...79,357,932
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Bdnf
brain-derived neurotrophic factor
IEP ISO
mRNA,protein:increased expression:fourth lumbar dorsal root ganglion: mRNA,protein:increased expression:spinal dorsal horn:
RGD
PMID:11425916 PMID:23466809
RGD:8657088 , RGD:8657102
NCBI chr 3:96,165,042...96,215,621
Ensembl chr 3:96,165,042...96,215,615
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Capn2
calpain 2
IEP
RGD
PMID:25150005
RGD:13792585
NCBI chr13:94,150,244...94,200,969
Ensembl chr13:94,150,240...94,200,969
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Cbl
Cbl proto-oncogene
IEP
mRNA:increased expression:spinal cord
RGD
PMID:30021515
RGD:126925240
NCBI chr 8:44,487,824...44,571,620
Ensembl chr 8:44,489,410...44,571,176
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Cblb
Cbl proto-oncogene B
IEP
mRNA:increased expression:spinal cord
RGD
PMID:30021515
RGD:126925240
NCBI chr11:48,589,878...48,756,940
Ensembl chr11:48,592,703...48,756,839
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Ccl2
C-C motif chemokine ligand 2
IEP
L5 spinal nerve;proein:increased expression:rostral ventrolateral medulla (rat)
RGD
PMID:22466130
RGD:8549494
NCBI chr10:67,005,424...67,007,222
Ensembl chr10:67,005,424...67,007,226
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Chl1
cell adhesion molecule L1-like
IEP IMP
mRNA, protein:increased expression:dorsal root ganglia (rat)
RGD
PMID:21452236 PMID:21452236
RGD:6483040 , RGD:6483040
NCBI chr 4:136,291,504...136,505,830
Ensembl chr 4:136,291,463...136,503,265
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Chrna5
cholinergic receptor nicotinic alpha 5 subunit
IEP
protein:increased expression:spinal nerve
RGD
PMID:15652389
RGD:150530460
NCBI chr 8:55,369,794...55,398,526
Ensembl chr 8:55,369,794...55,398,146
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Dag1
dystroglycan 1
IEP
RGD
PMID:16254495
RGD:11541065
NCBI chr 8:108,890,926...108,955,611
Ensembl chr 8:108,890,929...108,952,325
G
Ephb2
Eph receptor B2
IEP
mRNA,protein:increased expression:dorsal root ganglion
RGD
PMID:32149862
RGD:127285658
NCBI chr 5:148,889,574...149,077,027
Ensembl chr 5:148,897,246...149,077,059
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Erbb2
erb-b2 receptor tyrosine kinase 2
ameliorates
IMP
RGD
PMID:23437108
RGD:405650403
NCBI chr10:83,411,197...83,435,078
Ensembl chr10:83,411,313...83,435,078
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Gh1
growth hormone 1
treatment
ISO
RGD
PMID:21945950
RGD:10003150
NCBI chr10:91,228,102...91,230,079
Ensembl chr10:91,228,103...91,230,078
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Hhip
Hedgehog-interacting protein
IEP
RGD
PMID:19515211
RGD:11552601
NCBI chr19:27,863,684...27,952,528
Ensembl chr19:27,863,213...27,952,528
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Hspa5
heat shock protein family A (Hsp70) member 5
IEP
mRNA:increased expression
RGD
PMID:21940431
RGD:5685664
NCBI chr 3:18,055,507...18,059,969
Ensembl chr 3:18,055,405...18,059,891
G
Htr7
5-hydroxytryptamine receptor 7
IEP
protein:decreased expression: :
RGD
PMID:21693130
RGD:6480665
NCBI chr 1:233,636,442...233,761,063
Ensembl chr 1:233,636,452...233,760,626
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Il18
interleukin 18
IEP
RGD
PMID:23000553
RGD:8655963
NCBI chr 8:50,904,630...50,932,887
Ensembl chr 8:50,906,960...50,932,887
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Il1b
interleukin 1 beta
IDA
tibial and peroneal nerves
RGD
PMID:23121415
RGD:7204126
NCBI chr 3:116,577,005...116,583,386
Ensembl chr 3:116,577,010...116,583,415
G
Il6
interleukin 6
IEP
RGD
PMID:21492407
RGD:10402827
NCBI chr 4:5,214,602...5,219,178
Ensembl chr 4:5,213,394...5,219,178
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Il6r
interleukin 6 receptor
IEP
RGD
PMID:21492407
RGD:10402827
NCBI chr 2:175,289,157...175,347,719
Ensembl chr 2:175,298,686...175,347,536
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Irf5
interferon regulatory factor 5
IEP
protein:increased expression:spinal dorsal horn
RGD
PMID:29927790
RGD:40924654
NCBI chr 4:58,127,577...58,140,665
Ensembl chr 4:58,127,640...58,139,267
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Kcnb1
potassium voltage-gated channel subfamily B member 1
IEP
protein:decreased expression:tibial nerve, motor neuron, neuronal cell body (rat)
RGD
PMID:24355600
RGD:126908004
NCBI chr 3:155,820,255...155,913,383
Ensembl chr 3:155,822,963...155,916,194
G
L1cam
L1 cell adhesion molecule
ISO IDA
RGD
PMID:21376041 PMID:17640175
RGD:6483044 , RGD:6483092
NCBI chr X:151,597,270...151,623,776
Ensembl chr X:151,597,277...151,623,857
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Mir96
microRNA 96
IEP
RNA:altered expression:dorsal root ganglion:
RGD
PMID:19699278
RGD:11553934
NCBI chr 4:58,788,411...58,788,516
Ensembl chr 4:58,788,411...58,788,516
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Mmp3
matrix metallopeptidase 3
IEP
RGD
PMID:17027671
RGD:2325934
NCBI chr 8:4,640,397...4,653,963
Ensembl chr 8:4,640,416...4,653,961
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Mmp7
matrix metallopeptidase 7
IEP
RGD
PMID:17027671
RGD:2325934
NCBI chr 8:4,848,186...4,855,908
Ensembl chr 8:4,848,186...4,855,902
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Ngf
nerve growth factor
treatment
IEP IMP ISO
mRNA,protein:increased expression:sciatic nerve:
RGD
PMID:11425916 PMID:27392124 PMID:22669154
RGD:8657088 , RGD:405100230 , RGD:10413899
NCBI chr 2:189,901,058...189,954,452
Ensembl chr 2:189,901,058...189,954,452
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Ngfr
nerve growth factor receptor
treatment
IDA IEP
RGD
PMID:22669154 PMID:22302815
RGD:10413899 , RGD:10413905
NCBI chr10:80,515,287...80,533,518
Ensembl chr10:80,515,299...80,533,518
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Nog
noggin
treatment
ISO
RGD
PMID:17258709
RGD:10428775
NCBI chr10:74,128,712...74,130,339
Ensembl chr10:74,128,712...74,130,339
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Nts
neurotensin
IEP
mRNA,protein:increased expression:neuron:
RGD
PMID:8866516
RGD:9743915
NCBI chr 7:37,564,944...37,574,350
Ensembl chr 7:37,564,533...37,574,423
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P2rx4
purinergic receptor P2X 4
sexual_dimorphism
IEP
in male rat; protein:increased expression:microglia
RGD
PMID:29927790
RGD:40924654
NCBI chr12:33,844,609...33,862,265
Ensembl chr12:33,844,396...33,862,253
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Plau
plasminogen activator, urokinase
IEP
Cavernous Nerve Injury; mRNA:increased expression:pelvic ganglion (rat)
RGD
PMID:22300381
RGD:7241556
NCBI chr15:3,456,230...3,462,732
Ensembl chr15:3,456,232...3,462,775
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Procr
protein C receptor
IEP
RGD
PMID:27771530
RGD:13515125
NCBI chr 3:144,254,596...144,258,863
Ensembl chr 3:144,254,380...144,258,903
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Ptgs1
prostaglandin-endoperoxide synthase 1
disease_progression
IEP
RGD
PMID:14576556
RGD:5688234
NCBI chr 3:19,584,015...19,605,589
Ensembl chr 3:19,584,015...19,605,586
G
Ptgs2
prostaglandin-endoperoxide synthase 2
IEP ISO
protein:increased expression:
RGD
PMID:14871450 PMID:14871450
RGD:5688227 , RGD:5688227
NCBI chr13:62,163,936...62,172,193
Ensembl chr13:62,163,932...62,172,188
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Reg3b
regenerating family member 3 beta
IEP
mRNA:increased expression:hypoglossal nerve (rat)
RGD
PMID:15896308
RGD:9831386
NCBI chr 4:110,861,775...110,865,015
Ensembl chr 4:110,861,775...110,865,015
G
Serpinf1
serpin family F member 1
IEP
mRNA:increased expression:pelvic ganglion (rat)
RGD
PMID:22300381
RGD:7241556
NCBI chr10:60,250,198...60,262,593
Ensembl chr10:60,249,708...60,262,646
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Shh
sonic hedgehog signaling molecule
IEP
RGD
PMID:22994531
RGD:12879407
NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170
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Tnf
tumor necrosis factor
IEP
protein:increased expression:dorsal root ganglion: protein:increased expression:nucleus accumbens
RGD
PMID:19543754 PMID:24845379
RGD:7394752 , RGD:10450588
NCBI chr20:3,622,011...3,624,629
Ensembl chr20:3,622,011...3,624,629
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Trpa1
transient receptor potential cation channel, subfamily A, member 1
IEP
protein:increased expression:dorsal root ganglion:
RGD
PMID:18514429
RGD:10043379
NCBI chr 5:4,379,862...4,434,133
Ensembl chr 5:4,379,999...4,433,570
G
Trh
thyrotropin releasing hormone
ISO
CTD Direct Evidence: therapeutic
CTD
PMID:8690305
NCBI chr 4:124,742,111...124,777,094
Ensembl chr 4:124,742,111...124,744,637
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Bmp4
bone morphogenetic protein 4
treatment
ISO
RGD
PMID:16332232
RGD:8699514
NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
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Igf1
insulin-like growth factor 1
ISO
protein:decreased expression:serum:
RGD
PMID:12002507
RGD:8548865
NCBI chr 7:22,282,895...22,361,972
Ensembl chr 7:22,282,930...22,359,296
G
Adamts13
ADAM metallopeptidase with thrombospondin type 1 motif, 13
IEP
mRNA, protein:increased expression, increased activity:spinal cord (rat)
RGD
PMID:22425718
RGD:10449098
NCBI chr 3:10,299,264...10,338,464
Ensembl chr 3:10,300,028...10,346,687
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Amigo3
adhesion molecule with Ig like domain 3
IEP
mRNA, protein:increased expression:dorsal root ganglion (rat)
RGD
PMID:23613963
RGD:14390159
NCBI chr 8:108,741,899...108,743,425
Ensembl chr 8:108,693,060...108,744,555
G
Ccl2
C-C motif chemokine ligand 2
IEP ISO
mRNA, protein:increased expression:liver, serum (rat) CTD Direct Evidence: marker/mechanism
CTD RGD
PMID:15135227 PMID:15855648
RGD:11526154
NCBI chr10:67,005,424...67,007,222
Ensembl chr10:67,005,424...67,007,226
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Cd163
CD163 molecule
disease_progression
IEP
protein:increased expression:gray matter of spinal cord, white matter of spinal cord (rat)
RGD
PMID:23775900
RGD:149735576
NCBI chr 4:157,085,080...157,118,470
Ensembl chr 4:157,085,093...157,117,878
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Chst14
carbohydrate sulfotransferase 14
exacerbates
ISO
RGD
PMID:26586562
RGD:155663489
NCBI chr 3:105,916,481...105,918,538
Ensembl chr 3:105,916,466...105,918,548
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Egr1
early growth response 1
IEP
protein:increased expression:spinal cord dorsal horn (rat)
RGD
PMID:20675054
RGD:5131876
NCBI chr18:26,462,967...26,466,766
Ensembl chr18:26,462,981...26,466,766
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Elane
elastase, neutrophil expressed
treatment
IMP
RGD
PMID:9675307
RGD:10450552
NCBI chr 7:9,817,251...9,819,174
Ensembl chr 7:9,817,252...9,819,100
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Epo
erythropoietin
IEP
protein:increased expression:neuron, endothelium, glia:
RGD
PMID:15792521
RGD:11041719
NCBI chr12:19,204,258...19,207,948
Ensembl chr12:19,204,508...19,207,946
G
Epor
erythropoietin receptor
IEP
protein:increased expression:neuron, endothelium, glia:
RGD
PMID:15792521
RGD:11041719
NCBI chr 8:20,489,678...20,494,257
Ensembl chr 8:20,489,678...20,494,257
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Fas
Fas cell surface death receptor
treatment
ISO
human protein in a rat model protein:increased expression:spinal cord:
RGD
PMID:16689665 PMID:21490053 PMID:16202410
RGD:1582444 , RGD:12904017 , RGD:8663485
NCBI chr 1:231,798,963...231,832,591
Ensembl chr 1:231,798,960...231,832,591
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Faslg
Fas ligand
treatment
ISO
protein:increased expression:spinal cord:
RGD
PMID:21490053 PMID:21490053
RGD:12904017 , RGD:12904017
NCBI chr13:74,151,519...74,172,760
Ensembl chr13:74,154,954...74,162,215
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Fgf2
fibroblast growth factor 2
IEP
protein:increased expression:spinal cord
RGD
PMID:17244329
RGD:8655633
NCBI chr 2:120,236,328...120,290,673
Ensembl chr 2:120,236,328...120,291,221
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Fgfr2
fibroblast growth factor receptor 2
IEP
protein:increased expression:spinal cord (rat)
RGD
PMID:28981091
RGD:155782905
NCBI chr 1:184,745,418...184,850,655
Ensembl chr 1:184,745,420...184,850,626
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Fis1
fission, mitochondrial 1
treatment
IEP
RGD
PMID:25595990
RGD:12437079
NCBI chr12:19,708,560...19,723,392
Ensembl chr12:19,708,558...19,723,377
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Hmgcs1
3-hydroxy-3-methylglutaryl-CoA synthase 1
IEP
protein:decreased expression:spinal cord, thoracic vertebrae (rat)
RGD
PMID:20399821
RGD:2326108
NCBI chr 2:51,649,368...51,667,100
Ensembl chr 2:51,649,497...51,667,100
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Hspa4
heat shock protein family A (Hsp70) member 4
ISO
protein:increased expression:spinal cord (mouse)
RGD
PMID:21787762
RGD:6218959
NCBI chr10:37,408,025...37,449,080
Ensembl chr10:37,408,025...37,449,001
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Il6
interleukin 6
IEP
protein:increased expression:cerebrospinal fluid, serum
RGD
PMID:30327453
RGD:14975119
NCBI chr 4:5,214,602...5,219,178
Ensembl chr 4:5,213,394...5,219,178
G
Itgam
integrin subunit alpha M
treatment
IEP
RGD
PMID:19457130
RGD:329902059
NCBI chr 1:182,659,047...182,709,501
Ensembl chr 1:182,659,000...182,709,503
G
L1cam
L1 cell adhesion molecule
ISO
RGD
PMID:21671795
RGD:6483029
NCBI chr X:151,597,270...151,623,776
Ensembl chr X:151,597,277...151,623,857
G
Mir17
microRNA 17
treatment
IMP
RGD
PMID:31115018
RGD:329403058
NCBI chr15:92,180,629...92,180,712
Ensembl chr15:92,180,629...92,180,712
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Mt2A
metallothionein 2A
ISO
mRNA:increased expression:spinal cord (mouse)
RGD
PMID:15592854
RGD:6483848
NCBI chr19:10,832,009...10,832,783
Ensembl chr19:10,832,002...10,832,784
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Nos3
nitric oxide synthase 3
treatment
IEP
RGD
PMID:29323048
RGD:13504709
NCBI chr 4:10,793,834...10,814,170
Ensembl chr 4:10,793,834...10,814,166
G
Plat
plasminogen activator, tissue type
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:12227717
NCBI chr16:69,240,582...69,265,177
Ensembl chr16:69,240,585...69,268,223
G
Tnf
tumor necrosis factor
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:15135227
NCBI chr20:3,622,011...3,624,629
Ensembl chr20:3,622,011...3,624,629
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Tnfrsf1a
TNF receptor superfamily member 1A
IEP
protein:increased expression:spinal cord (rat)
RGD
PMID:21224756
RGD:5130917
NCBI chr 4:158,150,815...158,163,592
Ensembl chr 4:158,150,820...158,163,591
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Tnfrsf1b
TNF receptor superfamily member 1B
IEP ISO
protein:increased expression:spinal cord (rat) human protein in rat model
RGD
PMID:21224756 PMID:21224756
RGD:5130917 , RGD:5130917
NCBI chr 5:157,070,642...157,104,216
Ensembl chr 5:157,070,642...157,104,206
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Abcc8
ATP binding cassette subfamily C member 8
treatment
ISO IEP IMP
mRNA:increased expression:spinal cord
RGD
PMID:20410530 PMID:25763638 PMID:20410530 PMID:20410530
RGD:12790978 , RGD:12791993 , RGD:12790978 , RGD:12790978
NCBI chr 1:96,598,568...96,679,563
Ensembl chr 1:96,598,647...96,679,510
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Acan
aggrecan
IEP
protein:altered expression:spinal cord (rat)
RGD
PMID:14769391
RGD:2315837
NCBI chr 1:132,981,582...133,044,416
Ensembl chr 1:132,981,582...133,043,627
G
Adarb1
adenosine deaminase, RNA-specific, B1
IDA
RGD
PMID:20456005
RGD:10755338
NCBI chr20:11,222,569...11,350,854
Ensembl chr20:11,222,583...11,350,852
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Adcyap1
adenylate cyclase activating polypeptide 1
IEP IDA
protein:altered expression:spinal cord,dorsal root ganglion, urinary bladder
RGD
PMID:15698618 PMID:15913892
RGD:2325309 , RGD:2325306
NCBI chr 9:113,102,632...113,122,500
Ensembl chr 9:113,103,718...113,109,773
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Adipoq
adiponectin, C1Q and collagen domain containing
ISO
protein:increased expression:serum
RGD
PMID:16213239
RGD:5686719
NCBI chr11:77,721,912...77,735,644
Ensembl chr11:77,721,912...77,735,564
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Adora1
adenosine A1 receptor
IMP IDA IEP
protein:decreased expression:spinal cord
RGD
PMID:18289533 PMID:20065990 PMID:17853654
RGD:5129096 , RGD:5129094 , RGD:4890369
NCBI chr13:45,658,872...45,695,821
Ensembl chr13:45,658,872...45,695,801
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Adora2a
adenosine A2a receptor
IEP
RGD
PMID:17559837
RGD:4890378
NCBI chr20:13,315,848...13,333,386
Ensembl chr20:13,315,853...13,333,386
G
Adra1a
adrenoceptor alpha 1A
IEP
mRNA:increased expression:aorta
RGD
PMID:16524515
RGD:5688371
NCBI chr15:40,830,125...40,935,902
Ensembl chr15:40,832,534...40,927,500
G
Ager
advanced glycosylation end product-specific receptor
IEP
protein:increased expression:spinal cord (rat)
RGD
PMID:20195207
RGD:2325645
NCBI chr20:4,148,150...4,151,361
Ensembl chr20:4,147,890...4,151,078
G
Aif1
allograft inflammatory factor 1
IEP
protein:altered expression:spinal cord dorsal horn (rat)
RGD
PMID:17158026
RGD:2313037
NCBI chr20:3,646,784...3,652,670
Ensembl chr20:3,646,777...3,652,668
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Akt1
AKT serine/threonine kinase 1
IEP
RGD
PMID:20678995
RGD:10040962
NCBI chr 6:131,713,716...131,735,319
Ensembl chr 6:131,713,720...131,733,921
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Akt1s1
AKT1 substrate 1
ISO
CTD Direct Evidence: therapeutic
CTD
PMID:17457363
NCBI chr 1:95,333,186...95,339,678
Ensembl chr 1:95,332,898...95,339,677
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Ambra1
autophagy and beclin 1 regulator 1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:29793971
NCBI chr 3:77,700,936...77,890,221
Ensembl chr 3:77,700,936...77,890,221
G
Ankrd1
ankyrin repeat domain 1
IEP
mRNA:increased expression:spinal cord, dorsal root ganglion, neuron
RGD
PMID:17610582
RGD:5133279
NCBI chr 1:233,815,851...233,834,891
Ensembl chr 1:233,815,851...233,834,919
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Anp32b
acidic nuclear phosphoprotein 32 family member B
IEP
RGD
PMID:25034417
RGD:10401137
NCBI chr 5:60,743,077...60,765,726
Ensembl chr 5:60,743,443...60,765,717
G
Anxa1
annexin A1
treatment
ISO IEP
mRNA,protein:increased expression:neuron,glial cell
RGD
PMID:17917587 PMID:15248295
RGD:2306891 , RGD:10053688
NCBI chr 1:217,861,175...217,877,205
Ensembl chr 1:217,861,175...217,877,343
G
Anxa2
annexin A2
IEP
mRNA,protein:increased expression:neuron,glial cell
RGD
PMID:15248295
RGD:10053688
NCBI chr 8:70,105,268...70,141,663
Ensembl chr 8:70,105,253...70,141,658
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Anxa5
annexin A5
IEP
mRNA,protein:increased expression:neuron,glial cell
RGD
PMID:15248295
RGD:10053688
NCBI chr 2:119,314,007...119,344,703
Ensembl chr 2:119,314,007...119,353,369
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Apaf1
apoptotic peptidase activating factor 1
IEP
RGD
PMID:21748659
RGD:10053608
NCBI chr 7:25,494,143...25,579,540
Ensembl chr 7:25,494,609...25,579,540
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Apex1
apurinic/apyrimidinic endodeoxyribonuclease 1
IEP
mRNA:increased expression:spinal cord
RGD
PMID:18637713
RGD:2315670
NCBI chr15:24,144,595...24,146,785
Ensembl chr15:24,144,362...24,146,785
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Apoe
apolipoprotein E
ISO IEP
DNA:polymorphism:exon:
RGD
PMID:18581664 PMID:30036659
RGD:7771551 , RGD:13703128
NCBI chr 1:79,353,924...79,357,852
Ensembl chr 1:79,353,916...79,357,932
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Aqp1
aquaporin 1
IEP ISO
protein:increased expression:spinal cord, neuron, astrocyte CTD Direct Evidence: marker/mechanism
CTD RGD
PMID:21092735 PMID:18248364 PMID:21092735
RGD:2307072 , RGD:5148013
NCBI chr 4:84,482,512...84,494,690
Ensembl chr 4:84,482,512...84,494,690
G
Aqp4
aquaporin 4
IEP ISO
CTD Direct Evidence: marker/mechanism
CTD RGD
PMID:21092735 PMID:21092735 PMID:21280976 PMID:20517941
RGD:5148013 , RGD:5148035 , RGD:5148027
NCBI chr18:6,507,903...6,524,558
Ensembl chr18:6,507,903...6,524,856
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Atf4
activating transcription factor 4
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:29793971
NCBI chr 7:111,804,135...111,806,457
Ensembl chr 7:111,804,183...111,806,446
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Atg5
autophagy related 5
IEP ISO
protein:increased expression:axon CTD Direct Evidence: marker/mechanism
CTD RGD
PMID:29793971 PMID:25040536
RGD:11553820
NCBI chr20:47,798,217...47,889,216
Ensembl chr20:47,798,290...47,889,209
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Atg7
autophagy related 7
IEP
protein:increased expression:axon
RGD
PMID:25040536
RGD:11553820
NCBI chr 4:147,718,663...147,925,656
Ensembl chr 4:147,718,752...147,925,593
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Atm
ATM serine/threonine kinase
IEP
protein:increased expression:spinal cord
RGD
PMID:21748659
RGD:10053608
NCBI chr 8:53,828,741...53,932,773
Ensembl chr 8:53,831,093...53,932,437
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Atp2a1
ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1
IEP
protein:decreased expression:tail, skeletal muscle
RGD
PMID:21930674
RGD:13782071
NCBI chr 1:181,026,606...181,044,859
Ensembl chr 1:181,026,608...181,044,838
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Atp2a2
ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2
IEP
protein:decreased expression:tail, skeletal muscle
RGD
PMID:21930674
RGD:13782071
NCBI chr12:34,072,710...34,122,142
Ensembl chr12:34,072,683...34,122,101
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Bambi
BMP and activin membrane-bound inhibitor
IEP
mRNA,protein:decreased expression:spinal cord:
RGD
PMID:28035406
RGD:14390163
NCBI chr17:54,121,251...54,125,816
Ensembl chr17:54,121,255...54,126,060
G
Bax
BCL2 associated X, apoptosis regulator
treatment
IEP
RGD
PMID:27256506
RGD:13792677
NCBI chr 1:95,940,001...95,945,407
Ensembl chr 1:95,938,808...95,945,368
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Bcan
brevican
treatment
IEP
RGD
PMID:15016081
RGD:9589823
NCBI chr 2:173,454,479...173,467,717
Ensembl chr 2:173,454,482...173,467,460
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Bcl2
BCL2, apoptosis regulator
treatment
IEP
RGD
PMID:27256506
RGD:13792677
NCBI chr13:22,689,783...22,853,920
Ensembl chr13:22,684,989...22,853,743 Ensembl chr13:22,684,989...22,853,743
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Bdnf
brain-derived neurotrophic factor
treatment
ISO IDA IEP
RGD
PMID:16022868 PMID:24551172 PMID:19203225
RGD:4891112 , RGD:10059354 , RGD:4891066
NCBI chr 3:96,165,042...96,215,621
Ensembl chr 3:96,165,042...96,215,615
G
Becn1
beclin 1
treatment
ISO IEP
protein:increased expression:spinal cord CTD Direct Evidence: marker/mechanism
CTD RGD
PMID:29793971 PMID:21806471 PMID:23852559 PMID:24559459
RGD:6483100 , RGD:11561922 , RGD:11561918
NCBI chr10:86,231,387...86,246,742
Ensembl chr10:86,231,388...86,246,742
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Bmp2
bone morphogenetic protein 2
IDA
RGD
PMID:23770801
RGD:9068404
NCBI chr 3:120,812,660...120,822,579
Ensembl chr 3:120,812,882...120,821,397
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Bmp4
bone morphogenetic protein 4
treatment
IDA ISO
RGD
PMID:23770801 PMID:18803859
RGD:9068404 , RGD:9068437
NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
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Bnip3
BCL2 interacting protein 3
IEP
protein:increased expression:spinal cord
RGD
PMID:23637053
RGD:11564330
NCBI chr 1:193,708,164...193,725,348
Ensembl chr 1:193,708,167...193,725,359
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Bnip3l
BCL2 interacting protein 3 like
IEP
protein:increased expression:spinal cord
RGD
PMID:23637053
RGD:11564330
NCBI chr15:41,174,594...41,197,730
Ensembl chr15:41,174,594...41,197,803
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Brca2
BRCA2, DNA repair associated
IEP
mRNA,protein:increased expression:spinal cord:
RGD
PMID:21748659
RGD:10053608
NCBI chr12:59,492...103,789
Ensembl chr12:59,819...100,567
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C1qb
complement C1q B chain
IEP
mRNA:increased expression
RGD
PMID:16345062
RGD:1599510
NCBI chr 5:149,118,843...149,124,394
Ensembl chr 5:149,118,846...149,124,407
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Capn1
calpain 1
treatment
IMP
RGD
PMID:23102374
RGD:13792496
NCBI chr 1:203,275,912...203,300,848
Ensembl chr 1:203,277,344...203,300,177
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Capzb
capping actin protein of muscle Z-line subunit beta
IEP
protein:decreased expression:spinal cord
RGD
PMID:20141154
RGD:9685028
NCBI chr 5:151,435,600...151,535,409
Ensembl chr 5:151,434,871...151,535,409
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Casp1
caspase 1
IDA
protein:increased expression, increased activation:spinal cord
RGD
PMID:18367607
RGD:2315889
NCBI chr 8:2,587,812...2,597,403
Ensembl chr 8:2,587,831...2,597,383
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Casp12
caspase 12
treatment
IEP IDA
associated with Diabetes Mellitus, Experimental
RGD
PMID:19215662 PMID:26884858
RGD:2311450 , RGD:11560925
NCBI chr 8:2,642,296...2,669,549
Ensembl chr 8:2,642,434...2,674,037
G
Casp3
caspase 3
treatment
IMP IEP IDA ISO
CTD Direct Evidence: marker/mechanism
CTD RGD
PMID:14588118 PMID:18378144 PMID:27256506 PMID:27339639 PMID:21748659
RGD:2293322 , RGD:13792677 , RGD:13782345 , RGD:10053608
NCBI chr16:45,662,910...45,681,171
Ensembl chr16:45,662,910...45,684,648
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Casp9
caspase 9
treatment
IEP IDA
RGD
PMID:21748659 PMID:27339639
RGD:10053608 , RGD:13782345
NCBI chr 5:154,108,872...154,126,628
Ensembl chr 5:154,109,046...154,126,626
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Cav1
caveolin 1
IEP
protein:increased phosphorylation:spinal cord
RGD
PMID:17275798
RGD:2289124
NCBI chr 4:45,640,624...45,673,708
Ensembl chr 4:45,634,918...45,673,705
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Ccl12
C-C motif chemokine ligand 12
IEP
mRNA:increased expression:spinal cord
RGD
PMID:9698165
RGD:5135274
NCBI chr10:67,070,230...67,071,780
Ensembl chr10:67,070,230...67,071,780
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Ccl5
C-C motif chemokine ligand 5
ISO
mRNA:increased expression:spinal cord segment (mouse)
RGD
PMID:20478301
RGD:4889905
NCBI chr10:68,322,826...68,327,380
Ensembl chr10:68,322,829...68,327,377
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Ccnd3
cyclin D3
IEP
protein:increased expression:spinal cord
RGD
PMID:18008145
RGD:2316019
NCBI chr 9:13,394,161...13,400,341
Ensembl chr 9:13,394,169...13,489,371
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Ccne1
cyclin E1
IEP
protein:increased expression:spinal cord
RGD
PMID:16759516
RGD:2289281
NCBI chr 1:90,781,947...90,791,188
Ensembl chr 1:90,781,949...90,791,101
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Ccnh
cyclin H
IEP
mRNA, protein:increased expression:spinal cord
RGD
PMID:21710280
RGD:9590263
NCBI chr 2:15,835,064...15,855,648
Ensembl chr 2:15,834,833...15,855,819
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Ccr1
C-C motif chemokine receptor 1
IEP
RGD
PMID:21332278
RGD:5688138
NCBI chr 8:123,556,286...123,561,841
G
Ccr2
C-C motif chemokine receptor 2
IEP
protein:increased expression:spinal cord
RGD
PMID:18338959
RGD:4144888
NCBI chr 8:123,734,465...123,742,483
Ensembl chr 8:123,734,430...123,742,100
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Cd274
CD274 molecule
IEP
mRNA:increased expression:microglial cell
RGD
PMID:29665726
RGD:40886268
NCBI chr 1:227,116,674...227,137,379
Ensembl chr 1:227,116,649...227,134,450
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Cdc42
cell division cycle 42
IEP
mRNA:increased expression:spinal cord
RGD
PMID:15736231
RGD:5688276
NCBI chr 5:149,555,069...149,593,239
Ensembl chr 5:149,553,724...149,593,111
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Cdk1
cyclin-dependent kinase 1
IEP
protein:increased expression:spinal cord dura mater (rat)
RGD
PMID:19672039
RGD:2316488
NCBI chr20:19,266,226...19,281,417
Ensembl chr20:19,266,248...19,281,408
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Cdk19
cyclin-dependent kinase 19
IEP
mRNA, protein:increased expression:spinal cord
RGD
PMID:18008145
RGD:2316019
NCBI chr20:43,770,409...43,910,629
Ensembl chr20:43,770,409...43,910,628
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Cdkn1b
cyclin-dependent kinase inhibitor 1B
IDA
protein:decreased expression, altered localization:spinal cord, neuron, microglial cell
RGD
PMID:18319192
RGD:2293615
NCBI chr 4:167,760,067...167,765,177
Ensembl chr 4:167,760,181...167,764,982
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Chl1
cell adhesion molecule L1-like
IEP
protein:increased expression:spinal cord (rat)
RGD
PMID:21337374
RGD:6483045
NCBI chr 4:136,291,504...136,505,830
Ensembl chr 4:136,291,463...136,503,265
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Cnr1
cannabinoid receptor 1
IEP
RGD
PMID:18930143
RGD:2316199
NCBI chr 5:48,408,543...48,436,099
Ensembl chr 5:48,408,574...48,435,099
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Cnr2
cannabinoid receptor 2
IEP
RGD
PMID:18930143
RGD:2316199
NCBI chr 5:148,125,222...148,151,548
Ensembl chr 5:148,125,604...148,151,548
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Cr2
complement C3d receptor 2
IEP
protein:increased expression:cerebrospinal fluid
RGD
PMID:26502875
RGD:11343913
NCBI chr13:106,678,579...106,716,595
Ensembl chr13:106,685,413...106,716,235
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Crh
corticotropin releasing hormone
IEP
protein:altered expression:spinal cord (rat)
RGD
PMID:20458328
RGD:5490964
NCBI chr 2:102,143,055...102,144,919
Ensembl chr 2:102,143,055...102,144,919
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Crp
C-reactive protein
IDA
RGD
PMID:22404382
RGD:6903321
NCBI chr13:85,135,384...85,175,178
Ensembl chr13:85,124,977...85,175,178
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Csf2
colony stimulating factor 2
treatment
ISO
RGD
PMID:15658127
RGD:10449531
NCBI chr10:38,386,945...38,388,926
Ensembl chr10:38,386,945...38,389,199
G
Csf3
colony stimulating factor 3
treatment
ISO
RGD
PMID:21953623
RGD:10450511
NCBI chr10:83,660,787...83,664,569
Ensembl chr10:83,661,207...83,663,603
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Cspg4
chondroitin sulfate proteoglycan 4
ISO IDA
RGD
PMID:22243800 PMID:19604403 PMID:22042562
RGD:5686844 , RGD:5686859 , RGD:5686848
NCBI chr 8:57,264,962...57,300,010
Ensembl chr 8:57,264,962...57,300,010
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Ctss
cathepsin S
IEP
RGD
PMID:16344894
RGD:2303423
NCBI chr 2:183,086,437...183,114,483
Ensembl chr 2:183,086,437...183,114,483
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Cxcl1
C-X-C motif chemokine ligand 1
IEP
RGD
PMID:9698165
RGD:5135274
NCBI chr14:17,193,364...17,195,143
Ensembl chr14:17,193,365...17,195,215
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Cxcl10
C-X-C motif chemokine ligand 10
IEP
RGD
PMID:19170890
RGD:2311365
NCBI chr14:15,704,772...15,706,969
Ensembl chr14:15,704,758...15,706,975
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Cyba
cytochrome b-245 alpha chain
IEP
mRNA:increased expression:spinal cord
RGD
PMID:16345062
RGD:1599510
NCBI chr19:50,487,598...50,495,669
Ensembl chr19:50,487,597...50,495,721
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Cybb
cytochrome b-245 beta chain
ISO
mRNA,protein:increased expression:microglia:
RGD
PMID:20679217
RGD:11040629
NCBI chr X:13,358,101...13,392,570
Ensembl chr X:13,359,430...13,392,586
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Dab2
DAB adaptor protein 2
IEP
protein:increased expression:spinal cord
RGD
PMID:17317100
RGD:7243246
NCBI chr 2:55,514,692...55,567,476
Ensembl chr 2:55,514,700...55,567,476
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Dcc
DCC netrin 1 receptor
IEP
RGD
PMID:16998900
RGD:2314373
NCBI chr18:64,868,987...65,972,783
Ensembl chr18:64,873,898...65,972,740
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Ddit3
DNA-damage inducible transcript 3
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:29793971
NCBI chr 7:63,115,645...63,121,203
Ensembl chr 7:63,116,380...63,121,201
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Dusp1
dual specificity phosphatase 1
treatment
IEP
protein:decreased expression:spinal cord
RGD
PMID:18630599 PMID:19383246
RGD:7771572 , RGD:7771580
NCBI chr10:16,680,478...16,683,275
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Efnb2
ephrin B2
IEP
mRNA,protein:increased expression:fibroblast, astrocyte protein:increased phosporylation:spinal cord
RGD
PMID:33794069 PMID:12944508
RGD:127285659 , RGD:127285804
NCBI chr16:80,783,389...80,827,420
Ensembl chr16:80,783,417...80,824,391
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Egfr
epidermal growth factor receptor
IMP IEP
protein:increased phosphorylation:spinal cord, astrocyte (rat)
RGD
PMID:20869112 PMID:21402118
RGD:5131525 , RGD:5131454
NCBI chr14:91,176,979...91,349,722
Ensembl chr14:91,177,067...91,344,382
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Eif5a
eukaryotic translation initiation factor 5A
IEP
mRNA, protein:increased expression:gastrocnemius
RGD
PMID:23238062
RGD:10395360
NCBI chr10:54,640,104...54,644,845
Ensembl chr10:54,640,024...54,644,656
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Endog
endonuclease G
IEP
RGD
PMID:16689664
RGD:8655990
NCBI chr 3:13,449,113...13,451,715
Ensembl chr 3:13,449,086...13,451,932
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Eno2
enolase 2
IEP
protein:increased expression:serum, cerebrospinal fluid
RGD
PMID:18343116
RGD:2293743
NCBI chr 4:157,572,085...157,580,971
Ensembl chr 4:157,572,088...157,580,980
G
Ensa
endosulfine alpha
IEP
mRNA:decreased expression:spinal cord
RGD
PMID:16344894
RGD:2303423
NCBI chr 2:183,185,552...183,192,888
Ensembl chr 2:183,185,552...183,194,847
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Epha3
Eph receptor A3
IEP
RGD
PMID:16083359
RGD:2301766
NCBI chr11:1,138,485...1,474,102
Ensembl chr11:1,140,985...1,473,900
G
Epha4
Eph receptor A4
IMP IEP ISO
RGD
PMID:17970742 PMID:17418490 PMID:21931787
RGD:5688750 , RGD:5688782 , RGD:5688764
NCBI chr 9:78,815,460...78,958,139
Ensembl chr 9:78,815,460...78,958,139
G
Epha7
Eph receptor A7
IMP
mRNA:increased expression:spinal cord
RGD
PMID:16983667
RGD:2301957
NCBI chr 5:42,975,353...43,128,703
Ensembl chr 5:42,975,405...43,127,112
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Ephb2
Eph receptor B2
ameliorates
IMP IEP
RGD
PMID:33794069 PMID:12944508
RGD:127285659 , RGD:127285804
NCBI chr 5:148,889,574...149,077,027
Ensembl chr 5:148,897,246...149,077,059
G
Epo
erythropoietin
treatment
ISO
RGD
PMID:22196867
RGD:10401074
NCBI chr12:19,204,258...19,207,948
Ensembl chr12:19,204,508...19,207,946
G
Erbb3
erb-b2 receptor tyrosine kinase 3
IEP
mRNA, protein:increased expression:spinal cord
RGD
PMID:11797086
RGD:2289967
NCBI chr 7:994,549...1,015,876
Ensembl chr 7:996,225...1,015,525
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Esr1
estrogen receptor 1
IEP
RGD
PMID:25105782
RGD:10045844
NCBI chr 1:41,106,335...41,499,104
Ensembl chr 1:41,210,475...41,495,002
G
Esr2
estrogen receptor 2
IEP
RGD
PMID:25105782
RGD:10045844
NCBI chr 6:94,858,438...94,909,630
Ensembl chr 6:94,809,547...94,908,919
G
F2
coagulation factor II, thrombin
IEP
RGD
PMID:16344894
RGD:2303423
NCBI chr 3:77,596,196...77,609,486
Ensembl chr 3:77,596,198...77,609,486
G
Fadd
Fas associated via death domain
treatment
IEP
RGD
PMID:23574812
RGD:11344882
NCBI chr 1:199,743,200...199,745,746
Ensembl chr 1:199,739,994...199,745,653
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Fas
Fas cell surface death receptor
IEP IDA
protein:increased expression:cervical spinal cord
RGD
PMID:17518537 PMID:29738767 PMID:17703359
RGD:2290177 , RGD:13792580 , RGD:2290176
NCBI chr 1:231,798,963...231,832,591
Ensembl chr 1:231,798,960...231,832,591
G
Fgf1
fibroblast growth factor 1
ISO IDA
Human FGF1 used in rat model of spinal cord injury
RGD
PMID:21663406 PMID:18482974 PMID:20488178 PMID:8662542
RGD:5509875 , RGD:2317692 , RGD:5509877 , RGD:5509876
NCBI chr18:30,686,555...30,772,667
Ensembl chr18:30,686,581...30,772,357
G
Fgf2
fibroblast growth factor 2
treatment
IEP
RGD
PMID:24968269
RGD:40924652
NCBI chr 2:120,236,328...120,290,673
Ensembl chr 2:120,236,328...120,291,221
G
Fis1
fission, mitochondrial 1
treatment
IEP
RGD
PMID:26079325
RGD:12437066
NCBI chr12:19,708,560...19,723,392
Ensembl chr12:19,708,558...19,723,377
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Fkbp1b
FKBP prolyl isomerase 1B
IDA
RGD
PMID:27998200
RGD:329853757
NCBI chr 6:27,832,128...27,850,600
Ensembl chr 6:27,838,802...27,848,653
G
Flt1
Fms related receptor tyrosine kinase 1
IEP
mRNA:increased expression:spinal cord, astrocyte, macrophage
RGD
PMID:17409380
RGD:5684414
NCBI chr12:7,296,899...7,468,626
Ensembl chr12:7,297,292...7,468,626
G
Fn1
fibronectin 1
ISO
RGD
PMID:20347014
RGD:7205459
NCBI chr 9:73,196,044...73,264,695
Ensembl chr 9:73,196,044...73,264,678
G
Foxo3
forkhead box O3
IEP
protein:decreased expression:spinal cord,neuron, astrocyte:
RGD
PMID:22930444
RGD:10402202
NCBI chr20:45,669,708...45,764,606
Ensembl chr20:45,672,995...45,764,561
G
Foxp3
forkhead box P3
treatment
IEP
RGD
PMID:30287503
RGD:38549580
NCBI chr X:14,908,494...14,924,994
Ensembl chr X:14,908,494...14,923,838
G
Gap43
growth associated protein 43
treatment
IEP
RGD
PMID:24968269
RGD:40924652
NCBI chr11:58,376,371...58,470,047
Ensembl chr11:58,376,371...58,470,045
G
Gapdh
glyceraldehyde-3-phosphate dehydrogenase
treatment
IDA
RGD
PMID:27256506
RGD:13792677
NCBI chr 4:157,962,312...157,967,158
Ensembl chr 4:157,962,343...157,966,235
G
Gdnf
glial cell derived neurotrophic factor
ISO
RGD
PMID:22342994
RGD:5688774
NCBI chr 2:56,894,022...56,919,935
Ensembl chr 2:56,895,010...56,917,209
G
Gfap
glial fibrillary acidic protein
treatment
ISO IEP
protein:increased expression:spinal cord
RGD
PMID:10225952 PMID:24968269 PMID:21250919
RGD:6480471 , RGD:40924652 , RGD:6480511
NCBI chr10:87,852,891...87,861,631
Ensembl chr10:87,852,890...87,861,589
G
Ghsr
growth hormone secretagogue receptor
IMP
RGD
PMID:25261791
RGD:12907564
NCBI chr 2:110,268,489...110,271,865
Ensembl chr 2:110,268,489...110,271,865
G
Gja1
gap junction protein, alpha 1
treatment
IMP IEP
RGD
PMID:23403365 PMID:24183749
RGD:8662431 , RGD:8662460
NCBI chr20:35,756,007...35,768,481
Ensembl chr20:35,755,991...35,768,582
G
Gjc2
gap junction protein, gamma 2
treatment
IEP
RGD
PMID:26415641
RGD:13208513
NCBI chr10:43,962,642...43,971,358
Ensembl chr10:43,962,642...43,970,467
G
Got2
glutamic-oxaloacetic transaminase 2
IEP
protein:increased expression:spinal cord (rat)
RGD
PMID:27150525
RGD:13506243
NCBI chr19:9,174,304...9,199,995
Ensembl chr19:9,174,311...9,199,994
G
Gper1
G protein-coupled estrogen receptor 1
IMP
RGD
PMID:22975889
RGD:8552988
NCBI chr12:15,217,217...15,222,679
Ensembl chr12:15,217,442...15,221,889
G
Gpx3
glutathione peroxidase 3
IEP
protein:increased expression:cerebrospinal fluid
RGD
PMID:21559420
RGD:40907059
NCBI chr10:39,028,624...39,036,695
Ensembl chr10:39,028,570...39,037,035
G
Grk6
G protein-coupled receptor kinase 6
IEP
protein:increased expression:spinal cord, neuron, microglial cell (rat)
RGD
PMID:23359120
RGD:13792782
NCBI chr17:9,177,018...9,192,813
Ensembl chr17:9,177,019...9,192,644
G
Grn
granulin precursor
ISO
mRNA, protein:increased expression:spinal cord:
RGD
PMID:19946692
RGD:5509603
NCBI chr10:87,387,672...87,393,777
Ensembl chr10:87,387,638...87,393,775
G
Gsta4
glutathione S-transferase alpha 4
IEP
mRNA:increased expression:lumbar segment of spinal cord (rat)
RGD
PMID:22160604
RGD:5687769
NCBI chr 8:79,066,967...79,084,193
Ensembl chr 8:79,066,934...79,084,182
G
Hgf
hepatocyte growth factor
treatment
ISO IEP IDA
mRNA,protein:increased expression:spinal cord:
RGD
PMID:22140459 PMID:17549731 PMID:17549731
RGD:8548666 , RGD:2317487 , RGD:2317487
NCBI chr 4:18,673,736...18,745,582
Ensembl chr 4:18,677,101...18,745,409
G
Hif1a
hypoxia inducible factor 1 subunit alpha
IEP ISO
protein:increased expression:spinal cord CTD Direct Evidence: marker/mechanism
CTD RGD
PMID:21092735 PMID:21092735
RGD:5148013
NCBI chr 6:92,624,059...92,669,262
Ensembl chr 6:92,624,390...92,669,261
G
Hmgb1
high mobility group box 1
IEP
mRNA:increased expression:spinal cord
RGD
PMID:20195207
RGD:2325645
NCBI chr12:5,972,950...5,979,658
Ensembl chr12:5,901,586...5,978,565 Ensembl chr16:5,901,586...5,978,565
G
Hmox1
heme oxygenase 1
treatment
IEP
RGD
PMID:23943397
RGD:10766443
NCBI chr19:13,466,287...13,474,082
Ensembl chr19:13,467,244...13,474,079
G
Hrh3
histamine receptor H3
IDA
RGD
PMID:16671478
RGD:1626425
NCBI chr 3:167,191,551...167,196,642
Ensembl chr 3:167,191,558...167,196,642
G
Hsp90ab1
heat shock protein 90 alpha family class B member 1
IEP
protein:decreased expression:spinal cord (rat)
RGD
PMID:24499940
RGD:10445836
NCBI chr 9:15,432,986...15,438,358
Ensembl chr 9:15,433,691...15,438,488
G
Hspa5
heat shock protein family A (Hsp70) member 5
ISO
mRNA: increased expression
RGD
PMID:21933012
RGD:5685666
NCBI chr 3:18,055,507...18,059,969
Ensembl chr 3:18,055,405...18,059,891
G
Hspb1
heat shock protein family B (small) member 1
treatment
IEP
mRNA,protein:increased expression:spinal cord:
RGD
PMID:12098653 PMID:30287503
RGD:10402749 , RGD:38549580
NCBI chr12:20,794,014...20,795,675
Ensembl chr12:20,794,028...20,795,743
G
Icam1
intercellular adhesion molecule 1
treatment
IMP
RGD
PMID:8627308
RGD:11522712
NCBI chr 8:19,553,063...19,565,438
Ensembl chr 8:19,553,645...19,565,438
G
Id1
inhibitor of DNA binding 1
IEP
mRNA:increased expression:spinal cord (rat)
RGD
PMID:11746449
RGD:9686138
NCBI chr 3:141,210,666...141,212,420
Ensembl chr 3:141,211,267...141,212,419
G
Id2
inhibitor of DNA binding 2
IEP
mRNA:increased expression:spinal cord (rat)
RGD
PMID:11746449
RGD:9686138
NCBI chr 6:41,740,556...41,742,393
Ensembl chr 6:41,728,946...41,744,400
G
Id3
inhibitor of DNA binding 3
IEP
mRNA:increased expression:spinal cord (rat)
RGD
PMID:11746449
RGD:9686138
NCBI chr 5:148,372,784...148,374,353
Ensembl chr 5:148,372,762...148,374,349
G
Ifnb1
interferon beta 1
ameliorates
ISO IEP
RGD
PMID:17426631 PMID:20109445
RGD:401854235 , RGD:401854241
NCBI chr 5:103,020,758...103,021,595
Ensembl chr 5:103,020,969...103,021,523
G
Il10
interleukin 10
treatment
IEP
RGD
PMID:29691718
RGD:14975124
NCBI chr13:42,472,625...42,477,308
Ensembl chr13:42,472,839...42,477,313
G
Il18
interleukin 18
treatment
IDA IEP
RGD
PMID:18367607 PMID:23140983
RGD:2315889 , RGD:8655974
NCBI chr 8:50,904,630...50,932,887
Ensembl chr 8:50,906,960...50,932,887
G
Il1b
interleukin 1 beta
treatment
IEP IDA
mRNA, protein:increased expression:spinal cord
RGD
PMID:16038625 PMID:29691718 PMID:23209732
RGD:1626673 , RGD:14975124 , RGD:7175523
NCBI chr 3:116,577,005...116,583,386
Ensembl chr 3:116,577,010...116,583,415
G
Il1r1
interleukin 1 receptor type 1
IEP
mRNA,protein:increased expression:spinal cord
RGD
PMID:16456668
RGD:7207035
NCBI chr 9:42,504,917...42,580,958
Ensembl chr 9:42,504,735...42,579,937
G
Il1rn
interleukin 1 receptor antagonist
IDA ISO
protein:increased expression:serum (human)
RGD
PMID:16038625 PMID:17964877
RGD:1626673 , RGD:6907102
NCBI chr 3:7,111,567...7,127,451
Ensembl chr 3:7,111,550...7,127,445
G
Il4
interleukin 4
IMP
RGD
PMID:20623539
RGD:5128562
NCBI chr10:37,771,203...37,776,750
Ensembl chr10:37,771,203...37,776,750
G
Il4r
interleukin 4 receptor
IEP
mRNA:increased expression:spinal cord
RGD
PMID:20623539
RGD:5128562
NCBI chr 1:180,115,061...180,139,981
Ensembl chr 1:180,115,120...180,139,980
G
Il6
interleukin 6
treatment
IDA IEP
RGD
PMID:27085942 PMID:29691718
RGD:11062150 , RGD:14975124
NCBI chr 4:5,214,602...5,219,178
Ensembl chr 4:5,213,394...5,219,178
G
Irf1
interferon regulatory factor 1
IEP
RGD
PMID:11723173
RGD:2298928
NCBI chr10:37,917,155...37,924,166
Ensembl chr10:37,916,670...37,924,166
G
Irf5
interferon regulatory factor 5
treatment
IEP
RGD
PMID:24968269
RGD:40924652
NCBI chr 4:58,127,577...58,140,665
Ensembl chr 4:58,127,640...58,139,267
G
Itih4
inter-alpha-trypsin inhibitor heavy chain 4
severity
IEP
protein:decreased expression:cerebrospinal fluid
RGD
PMID:21559420
RGD:40907059
NCBI chr16:6,080,539...6,095,710
Ensembl chr16:6,080,539...6,095,708
G
Jak2
Janus kinase 2
treatment
IMP
RGD
PMID:23274522
RGD:10411896
NCBI chr 1:226,995,334...227,054,381
Ensembl chr 1:226,995,334...227,054,189
G
Jun
Jun proto-oncogene, AP-1 transcription factor subunit
IDA
protein:increased phosphorylation:neuron
RGD
PMID:21132399
RGD:4889994
NCBI chr 5:109,894,175...109,897,268
Ensembl chr 5:109,893,145...109,897,656
G
Kcnj10
potassium inwardly-rectifying channel, subfamily J, member 10
IEP
protein:decreased expression:spinal cord
RGD
PMID:20375134
RGD:8662905
NCBI chr13:84,802,026...84,835,383
Ensembl chr13:84,802,009...84,835,461
G
Kcnk2
potassium two pore domain channel subfamily K member 2
treatment
IDA
RGD
PMID:22425721
RGD:9831183
NCBI chr13:100,766,101...100,963,435
Ensembl chr13:100,766,113...100,963,435
G
Kcnn4
potassium calcium-activated channel subfamily N member 4
ISO
RGD
PMID:24606313
RGD:329955563
NCBI chr 1:79,956,380...79,974,354
Ensembl chr 1:79,959,322...79,974,340
G
Kdm6b
lysine demethylase 6B
IEP
mRNA:increased expression:spinal cord (rat)
RGD
PMID:22578249
RGD:9587821
NCBI chr10:54,120,716...54,142,212
Ensembl chr10:54,121,848...54,130,794
G
Kdr
kinase insert domain receptor
IEP
mRNA:increased expression:spinal cord, astrocyte, macrophage
RGD
PMID:17409380
RGD:5684414
NCBI chr14:32,217,871...32,261,018
Ensembl chr14:32,217,871...32,261,018
G
Kif3b
kinesin family member 3B
IEP
protein:increased expression:spinal cord
RGD
PMID:23093447
RGD:11049594
NCBI chr 3:141,758,466...141,798,012
Ensembl chr 3:141,758,466...141,797,963
G
Klk6
kallikrein related-peptidase 6
IEP
protein:increased expression:spinal cord
RGD
PMID:16987227
RGD:2314866
NCBI chr 1:94,278,863...94,286,136
Ensembl chr 1:94,280,340...94,286,121
G
Kmo
kynurenine 3-monooxygenase
IEP
mRNA,protein:increased expression:spinal cord:
RGD
PMID:26524415
RGD:13703043
NCBI chr13:87,557,080...87,589,334
Ensembl chr13:87,557,286...87,588,881
G
Lep
leptin
IEP
RGD
PMID:19777863
RGD:5128780
NCBI chr 4:57,661,127...57,675,262
Ensembl chr 4:57,661,131...57,675,262
G
Lrp1
LDL receptor related protein 1
treatment
IDA
RGD
PMID:23867460
RGD:13800520
NCBI chr 7:63,380,325...63,461,029
Ensembl chr 7:63,380,356...63,460,910
G
Lrp5
LDL receptor related protein 5
treatment
IEP
RGD
PMID:24090150
RGD:12798566
NCBI chr 1:200,814,247...200,917,581
Ensembl chr 1:200,814,250...200,917,581
G
Lum
lumican
IEP
protein:increased expression:spinal cord
RGD
PMID:18482974
RGD:2317692
NCBI chr 7:32,358,990...32,365,794
Ensembl chr 7:32,358,614...32,365,793
G
Map1b
microtubule-associated protein 1B
IEP
protein:increased phosphorylation:spinal cord, neuron
RGD
PMID:17880387
RGD:2304007
NCBI chr 2:30,817,261...30,910,458
Ensembl chr 2:30,817,261...30,910,317
G
Map1lc3a
microtubule-associated protein 1 light chain 3 alpha
treatment
IEP
protein:increased expression:spinal cord
RGD
PMID:24559459 PMID:23637053 PMID:23852559
RGD:11561918 , RGD:11564330 , RGD:11561922
NCBI chr 3:143,783,024...143,784,670
Ensembl chr 3:143,783,024...143,784,670
G
Map1lc3b
microtubule-associated protein 1 light chain 3 beta
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:29793971
NCBI chr19:49,665,795...49,673,655
Ensembl chr19:49,665,791...49,677,690
G
Map2
microtubule-associated protein 2
IDA
RGD
PMID:21704982
RGD:6483323
NCBI chr 9:67,723,422...67,981,886
Ensembl chr 9:67,723,371...67,979,809
G
Map3k5
mitogen-activated protein kinase kinase kinase 5
IEP
protein:increased expression:white matter and grey matter:
RGD
PMID:10331432
RGD:10412645
NCBI chr 1:14,685,776...14,904,935
Ensembl chr 1:14,685,492...14,904,800
G
Mapt
microtubule-associated protein tau
treatment
IEP
RGD
PMID:22052241
RGD:8158113
NCBI chr10:89,138,644...89,236,137
Ensembl chr10:89,138,627...89,236,129
G
Mdm2
MDM2 proto-oncogene
IEP
protein:increased expression:spinal cord
RGD
PMID:23595775
RGD:10412063
NCBI chr 7:53,290,660...53,315,205
Ensembl chr 7:53,290,664...53,314,915
G
Met
MET proto-oncogene, receptor tyrosine kinase
IEP
mRNA, protein:increased expression:spinal cord (rat)
RGD
PMID:17549731
RGD:2317487
NCBI chr 4:45,790,456...45,898,139
Ensembl chr 4:45,790,791...45,897,876
G
Mfn1
mitofusin 1
treatment
IEP
protein:altered expression:spinal cord, mitochondrion (rat)
RGD
PMID:26981103 PMID:26079325
RGD:12910837 , RGD:12437066
NCBI chr 2:115,313,380...115,359,651
Ensembl chr 2:115,313,401...115,359,640
G
Mfn2
mitofusin 2
treatment
IEP
protein:increased expression:spinal cord (rat)
RGD
PMID:28404953 PMID:26079325
RGD:12910735 , RGD:12437066
NCBI chr 5:158,304,285...158,335,502
Ensembl chr 5:158,304,287...158,335,342
G
Mif
macrophage migration inhibitory factor
IEP
mRNA:increased expression:spinal cord, microglial cell
RGD
PMID:15067555
RGD:1641997
NCBI chr20:12,790,919...12,791,784
Ensembl chr20:12,790,902...12,799,504
G
Mir21
microRNA 21
exacerbates
IMP
RGD
PMID:31102912
RGD:41410823
NCBI chr10:71,405,257...71,405,348
Ensembl chr10:71,405,257...71,405,348
G
Mir214
microRNA 214
treatment
IEP
RGD
PMID:30287503
RGD:38549580
NCBI chr13:74,588,374...74,588,481
Ensembl chr13:74,588,372...74,588,481
G
Mir411
microRNA 411
IEP
RGD
PMID:29738767
RGD:13792580
NCBI chr 6:128,723,189...128,723,264
Ensembl chr 6:128,723,184...128,723,279
G
Mir494
microRNA 494
ameliorates
IDA
RGD
PMID:28601045
RGD:156420142
NCBI chr 6:128,728,710...128,728,792
Ensembl chr 6:128,728,709...128,728,793
G
Mmp2
matrix metallopeptidase 2
treatment
IEP
RGD
PMID:24436993
RGD:8657106
NCBI chr19:14,154,657...14,182,870
Ensembl chr19:14,154,657...14,182,870
G
Mmp9
matrix metallopeptidase 9
treatment
IEP
RGD
PMID:25763638
RGD:12791993
NCBI chr 3:153,684,158...153,692,118
Ensembl chr 3:153,683,858...153,692,120
G
Mpo
myeloperoxidase
IEP
protein:increased activity:spinal cord
RGD
PMID:22986158
RGD:6909148
NCBI chr10:72,594,883...72,608,862
Ensembl chr10:72,594,661...72,604,819
G
Mrc1
mannose receptor, C type 1
treatment
IEP
RGD
PMID:24968269
RGD:40924652
NCBI chr17:77,249,187...77,330,857
Ensembl chr17:77,249,187...77,330,857
G
Mt-nd3
mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 3
IMP
RGD
PMID:20438613
RGD:5687694
NCBI chr MT:9,451...9,798 NCBI chr MT:9,451...9,798 NCBI chr MT:9,451...9,798 NCBI chr MT:9,451...9,798
Ensembl chr MT:9,451...9,798
G
Mtor
mechanistic target of rapamycin kinase
treatment
IMP
RGD
PMID:20678995
RGD:10040962
NCBI chr 5:158,884,856...158,994,311
Ensembl chr 5:158,884,804...158,994,311
G
Myrf
myelin regulatory factor
ameliorates
IDA
RGD
PMID:27370227
RGD:213230157
NCBI chr 1:206,854,175...206,886,276
Ensembl chr 1:206,854,175...206,886,157
G
Napepld
N-acyl phosphatidylethanolamine phospholipase D
IEP
mRNA:increased expression:spinal cord
RGD
PMID:18930143
RGD:2316199
NCBI chr 4:13,360,532...13,398,815
Ensembl chr 4:13,361,006...13,398,748
G
Ncam1
neural cell adhesion molecule 1
treatment
ISO
RGD
PMID:28529158
RGD:40924632
NCBI chr 8:49,865,629...50,165,687
Ensembl chr 8:49,865,633...50,166,014
G
Ncf2
neutrophil cytosolic factor 2
IEP
protein:increased expression:spinal cord
RGD
PMID:14644473
RGD:2314450
NCBI chr13:64,955,622...64,986,144
Ensembl chr13:64,955,503...64,986,277
G
Nefh
neurofilament heavy chain
treatment
IDA IEP
RGD
PMID:18772508 PMID:32168135
RGD:9698443 , RGD:27226888
NCBI chr14:79,830,362...79,840,347
Ensembl chr14:79,830,362...79,840,351
G
Nefl
neurofilament light chain
treatment
IDA
RGD
PMID:18772508
RGD:9698443
NCBI chr15:42,301,920...42,305,793
Ensembl chr15:42,301,916...42,305,793
G
Nefm
neurofilament medium chain
treatment
IDA
RGD
PMID:18772508
RGD:9698443
NCBI chr15:42,360,449...42,365,753
Ensembl chr15:42,360,454...42,365,755
G
Nfe2l2
NFE2 like bZIP transcription factor 2
treatment
IDA
RGD
PMID:24747453
RGD:10412730
NCBI chr 3:60,594,239...60,621,712
Ensembl chr 3:60,594,242...60,621,737
G
Nfkbia
NFKB inhibitor alpha
treatment
IEP
RGD
PMID:21134362
RGD:10413867
NCBI chr 6:72,858,713...72,861,941
Ensembl chr 6:72,858,712...72,861,941
G
Ngf
nerve growth factor
IEP IMP
RGD
PMID:16915089 PMID:12499054
RGD:5144069 , RGD:5144073
NCBI chr 2:189,901,058...189,954,452
Ensembl chr 2:189,901,058...189,954,452
G
Ngfr
nerve growth factor receptor
treatment
IEP IMP
mRNA:increased expression:spinal cord
RGD
PMID:11223160 PMID:23748892
RGD:5144100 , RGD:10414079
NCBI chr10:80,515,287...80,533,518
Ensembl chr10:80,515,299...80,533,518
G
Nkx6-1
NK6 homeobox 1
IMP
RGD
PMID:18687784
RGD:2311166
NCBI chr14:7,969,756...7,976,689
Ensembl chr14:7,969,756...7,976,681
G
Nlk
nemo like kinase
IEP
protein:increased expression:grey matter:
RGD
PMID:24395089
RGD:12791278
NCBI chr10:63,467,388...63,590,960
Ensembl chr10:63,438,222...63,589,730
G
Nog
noggin
treatment
ISO
RGD
PMID:18221366
RGD:10429192
NCBI chr10:74,128,712...74,130,339
Ensembl chr10:74,128,712...74,130,339
G
Nos1
nitric oxide synthase 1
IEP IMP
protein:increased expression:spinal cord
RGD
PMID:19291395 PMID:20633123
RGD:5132595 , RGD:5131936
NCBI chr12:38,615,111...38,795,492
Ensembl chr12:38,626,714...38,710,945
G
Nos2
nitric oxide synthase 2
IEP
mRNA:altered expression:thoracic aorta
RGD
PMID:17287083
RGD:4891407
NCBI chr10:63,815,308...63,851,208
Ensembl chr10:63,815,308...63,851,210
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Nos3
nitric oxide synthase 3
IEP
RGD
PMID:17287083
RGD:4891407
NCBI chr 4:10,793,834...10,814,170
Ensembl chr 4:10,793,834...10,814,166
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Nox4
NADPH oxidase 4
IEP
mRNA,protein:increased expression:gastrocnemius muscle
RGD
PMID:27998200
RGD:329853757
NCBI chr 1:140,900,886...141,078,844
Ensembl chr 1:140,901,097...141,077,406
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Nqo1
NAD(P)H quinone dehydrogenase 1
treatment
IEP
protein:increased expression:spinal cord (rat)
RGD
PMID:24747453 PMID:28881715
RGD:10412730 , RGD:13434916
NCBI chr19:35,295,633...35,310,528
Ensembl chr19:35,295,573...35,310,557
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Nrg1
neuregulin 1
exacerbates ameliorates
ISO IDA
RGD
PMID:26993800 PMID:20734425
RGD:11056189 , RGD:405650600
NCBI chr16:59,250,658...60,304,519
Ensembl chr16:59,250,854...60,296,884
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Ntf3
neurotrophin 3
ISO
RGD
PMID:16022868
RGD:4891112
NCBI chr 4:158,914,984...158,984,453
Ensembl chr 4:158,914,957...158,984,596
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Ntrk1
neurotrophic receptor tyrosine kinase 1
IEP
mRNA:decreased expression:spinal cord
RGD
PMID:18585435
RGD:2308892
NCBI chr 2:173,236,961...173,253,806
Ensembl chr 2:173,236,963...173,253,770
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Ntrk2
neurotrophic receptor tyrosine kinase 2
IDA IMP
RGD
PMID:22027236 PMID:20597685
RGD:5684547 , RGD:5684898
NCBI chr17:5,558,992...5,870,299
Ensembl chr17:5,559,043...5,869,136
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Ntrk3
neurotrophic receptor tyrosine kinase 3
IEP
mRNA:decreased expression:spinal cord
RGD
PMID:18585435
RGD:2308892
NCBI chr 1:132,116,472...132,503,849
Ensembl chr 1:132,132,849...132,503,286
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Olig2
oligodendrocyte transcription factor 2
treatment
ISO IMP
RGD
PMID:28452182 PMID:22173726
RGD:40902836 , RGD:40902844
NCBI chr11:30,475,510...30,478,886
Ensembl chr11:30,475,398...30,480,152
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P2rx7
purinergic receptor P2X 7
ISO
CTD Direct Evidence: therapeutic
CTD
PMID:15258577
NCBI chr12:33,889,709...33,934,168
Ensembl chr12:33,879,745...33,934,619
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Parp1
poly (ADP-ribose) polymerase 1
IEP ISO
CTD Direct Evidence: marker/mechanism
CTD RGD
PMID:15696051 PMID:21748659
RGD:10053608
NCBI chr13:92,307,593...92,339,406
Ensembl chr13:92,307,586...92,339,404
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Pdcd1
programmed cell death 1
treatment
IEP
RGD
PMID:29665726
RGD:40886268
NCBI chr 9:94,418,786...94,431,945
Ensembl chr 9:94,418,791...94,431,937
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Pdcd1lg2
programmed cell death 1 ligand 2
IEP
mRNA:increased expression:microglial cell
RGD
PMID:29665726
RGD:40886268
NCBI chr 1:227,158,941...227,223,938
Ensembl chr 1:227,158,941...227,223,938
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Pdgfb
platelet derived growth factor subunit B
ISO
RGD
PMID:21568693
RGD:6482306
NCBI chr 7:111,539,444...111,557,984
Ensembl chr 7:111,540,345...111,557,984
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Pla2g2a
phospholipase A2 group IIA
ISO IEP
protein:increased expression:spinal cord
RGD
PMID:21868473 PMID:19306380
RGD:6482718 , RGD:6482721
NCBI chr 5:151,076,442...151,079,019
Ensembl chr 5:151,076,442...151,079,014
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Pla2g6
phospholipase A2 group VI
ISO
protein:increased expression:spinal cord
RGD
PMID:21868473
RGD:6482718
NCBI chr 7:110,851,378...110,891,557
Ensembl chr 7:110,851,378...110,891,114
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Plau
plasminogen activator, urokinase
ISO
RGD
PMID:21573723
RGD:6483797
NCBI chr15:3,456,230...3,462,732
Ensembl chr15:3,456,232...3,462,775
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Plaur
plasminogen activator, urokinase receptor
ISO
RGD
PMID:21573723
RGD:6483797
NCBI chr 1:80,053,440...80,068,384
Ensembl chr 1:80,050,324...80,068,595
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Pon1
paraoxonase 1
treatment
IDA
RGD
PMID:12897486
RGD:8547682
NCBI chr 4:33,294,737...33,325,759
Ensembl chr 4:33,294,722...33,321,360
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Ppard
peroxisome proliferator-activated receptor delta
IEP
RGD
PMID:20058304
RGD:2324875
NCBI chr20:6,298,785...6,363,970
Ensembl chr20:6,298,785...6,363,968
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Ppargc1a
PPARG coactivator 1 alpha
IDA
RGD
PMID:22208735
RGD:6484263
NCBI chr14:58,860,752...59,516,525
Ensembl chr14:58,861,144...59,512,656
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Ppp1cc
protein phosphatase 1 catalytic subunit gamma
IEP
protein:increased expression:spinal cord, astrocyte, microglial cell
RGD
PMID:29033188
RGD:13514047
NCBI chr12:34,383,072...34,400,553
Ensembl chr12:34,383,072...34,400,553
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Ppp1r15a
protein phosphatase 1, regulatory subunit 15A
IEP ISO
mRNA:increased expression:spinal cord (rat) CTD Direct Evidence: marker/mechanism
CTD RGD
PMID:29793971 PMID:17578450
RGD:9999410
NCBI chr 1:96,000,053...96,003,128
Ensembl chr 1:96,000,058...96,003,171
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Prkcg
protein kinase C, gamma
ISO
protein:decreased expression:spinal cord (mouse)
RGD
PMID:10501452
RGD:28867228
NCBI chr 1:65,832,851...65,860,676
Ensembl chr 1:65,832,855...65,859,384
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Pten
phosphatase and tensin homolog
IEP
mRNA:increased expression:spinal cord:
RGD
PMID:28601045
RGD:156420142
NCBI chr 1:230,630,443...230,697,070
Ensembl chr 1:230,630,338...230,696,838
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Ptgs1
prostaglandin-endoperoxide synthase 1
IMP IEP
protein:increased expression:microglia, macrophage
RGD
PMID:17184185 PMID:11063829
RGD:5688221 , RGD:5688246
NCBI chr 3:19,584,015...19,605,589
Ensembl chr 3:19,584,015...19,605,586
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Ptgs2
prostaglandin-endoperoxide synthase 2
IEP
RGD
PMID:18606213
RGD:5135219
NCBI chr13:62,163,936...62,172,193
Ensembl chr13:62,163,932...62,172,188
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Ptprz1
protein tyrosine phosphatase, receptor type Z1
treatment
IDA IEP
RGD
PMID:15016081 PMID:18065151 PMID:12895450
RGD:9589823 , RGD:9590124 , RGD:9590113
NCBI chr 4:51,397,316...51,595,220
Ensembl chr 4:51,397,601...51,595,218
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Rad21
RAD21 cohesin complex component
treatment
IEP
RGD
PMID:33741460
RGD:243065262
NCBI chr 7:83,287,867...83,314,810
Ensembl chr 7:83,287,870...83,314,817
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Rara
retinoic acid receptor, alpha
IEP
RGD
PMID:16420438
RGD:2314291
NCBI chr10:83,883,490...83,928,932
Ensembl chr10:83,893,384...83,928,142
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Rbmx
RNA binding motif protein, X-linked
IEP
RGD
PMID:23180094
RGD:10053723
NCBI chr X:135,305,237...135,314,806
Ensembl chr X:135,305,325...135,314,743
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Rela
RELA proto-oncogene, NF-kB subunit
IMP
RGD
PMID:17918744
RGD:2298849
NCBI chr 1:202,925,001...202,935,484
Ensembl chr 1:202,924,945...202,935,484
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Rgma
repulsive guidance molecule BMP co-receptor a
treatment
IMP
RGD
PMID:16585268
RGD:9850138
NCBI chr 1:127,128,934...127,172,918
Ensembl chr 1:127,128,934...127,172,918
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Rhoa
ras homolog family member A
IEP
mRNA,protein:increased expression:spinal cord:
RGD
PMID:27893610
RGD:243048440
NCBI chr 8:108,991,926...109,025,746
Ensembl chr 8:108,991,954...109,025,746
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Robo1
roundabout guidance receptor 1
IEP
mRNA,protein:increased expression:spinal cord:
RGD
PMID:27893610
RGD:243048440
NCBI chr11:10,580,863...11,621,675
Ensembl chr11:10,580,908...11,620,203
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Rpsa
ribosomal protein SA
IEP
RGD
PMID:19196078
RGD:11041651
NCBI chr 8:119,851,225...119,855,103
Ensembl chr 8:119,851,225...119,855,247
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Ryr1
ryanodine receptor 1
IDA
protein:hyperoxidation,hypernitrosylation:gastrocnemius muscle
RGD
PMID:27998200
RGD:329853757
NCBI chr 1:84,292,578...84,423,824
Ensembl chr 1:84,292,578...84,423,812
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Scn3a
sodium voltage-gated channel alpha subunit 3
IDA
RGD
PMID:16109750 PMID:16718433
RGD:2317321 , RGD:2317320
NCBI chr 3:50,146,411...50,258,119
Ensembl chr 3:50,148,139...50,258,119
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Serpinc1
serpin family C member 1
treatment
ISO
RGD
PMID:15792522
RGD:1599333
NCBI chr13:73,257,208...73,271,476
Ensembl chr13:73,257,179...73,284,293
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Shh
sonic hedgehog signaling molecule
treatment
IMP
RGD
PMID:24837681
RGD:12879409
NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170
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Siah1
siah E3 ubiquitin protein ligase 1
treatment
IDA
RGD
PMID:27256506
RGD:13792677
NCBI chr19:20,378,908...20,402,512
Ensembl chr19:20,378,439...20,403,808
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Slc25a27
solute carrier family 25, member 27
ISO
protein:increased expression:spinal cord
RGD
PMID:18534681
RGD:6482843
NCBI chr 9:17,306,898...17,333,942
Ensembl chr 9:17,307,023...17,332,731
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Slc7a5
solute carrier family 7 member 5
IEP
protein:increased expression:spinal cord
RGD
PMID:19388351
RGD:151361131
NCBI chr19:49,935,220...49,963,823
Ensembl chr19:49,935,220...49,963,823
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Slit1
slit guidance ligand 1
ISO
RGD
PMID:16262652
RGD:2316136
NCBI chr 1:240,409,559...240,558,127
Ensembl chr 1:240,409,561...240,558,127
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Slit2
slit guidance ligand 2
IEP
mRNA, protein:increased expression:spinal cord mRNA,protein:decreased expression:spinal cord:
RGD
PMID:19783284 PMID:27893610
RGD:2316127 , RGD:243048440
NCBI chr14:62,616,337...62,955,934
Ensembl chr14:62,617,067...62,955,948
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Slit3
slit guidance ligand 3
ISO
RGD
PMID:16262652
RGD:2316136
NCBI chr10:19,571,798...20,156,634
Ensembl chr10:19,571,684...20,156,634
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Smurf1
SMAD specific E3 ubiquitin protein ligase 1
IEP
protein:increased expression:spinal cord
RGD
PMID:23595775
RGD:10412063
NCBI chr12:9,635,009...9,726,520
Ensembl chr12:9,635,025...9,726,519
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Socs2
suppressor of cytokine signaling 2
IEP
RGD
PMID:11723173
RGD:2298928
NCBI chr 7:30,006,360...30,045,161
Ensembl chr 7:30,008,578...30,043,548
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Sod1
superoxide dismutase 1
treatment
ISO
human protein in a rat model CTD Direct Evidence: therapeutic human gene in a rat model
CTD RGD
PMID:17457363 PMID:18722523 PMID:16689664
RGD:8655939 , RGD:8655990
NCBI chr11:29,456,673...29,462,249
Ensembl chr11:29,456,558...29,462,249
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Sox2
SRY-box transcription factor 2
IEP
RGD
PMID:23169458
RGD:8661675
NCBI chr 2:117,536,929...117,539,340
Ensembl chr 2:117,536,929...117,539,338
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Sparc
secreted protein acidic and cysteine rich
ISO
RGD
PMID:17611274
RGD:2300052
NCBI chr10:39,516,394...39,538,252
Ensembl chr10:39,516,406...39,538,396
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Spp1
secreted phosphoprotein 1
ISO
RGD
PMID:15592854
RGD:6483848
NCBI chr14:5,308,885...5,315,120
Ensembl chr14:5,308,885...5,315,162
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Sqstm1
sequestosome 1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:29793971
NCBI chr10:34,525,517...34,536,670
Ensembl chr10:34,525,519...34,536,673
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Tacr1
tachykinin receptor 1
IMP
RGD
PMID:18945947
RGD:2304258
NCBI chr 4:114,920,844...115,089,733
Ensembl chr 4:114,920,844...115,089,733
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Tbp
TATA box binding protein
IEP
protein:increased expression:spinal cord, astrocyte, microglial cell
RGD
PMID:24710803
RGD:9681729
NCBI chr 1:56,463,330...56,480,430
Ensembl chr 1:56,463,618...56,510,016
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Tert
telomerase reverse transcriptase
ISO IEP
mRNA, protein:increased expression:spinal cord
RGD
PMID:15798365 PMID:23793903
RGD:2291993 , RGD:11038671
NCBI chr 1:29,637,213...29,659,561
Ensembl chr 1:29,637,506...29,659,561
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Tgfb1
transforming growth factor, beta 1
IMP
RGD
PMID:15145083
RGD:2302103
NCBI chr 1:81,196,532...81,212,848
Ensembl chr 1:81,196,532...81,212,847
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Tgfb2
transforming growth factor, beta 2
IMP
RGD
PMID:15145083
RGD:2302103
NCBI chr13:98,160,075...98,261,771
Ensembl chr13:98,160,087...98,261,405
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Thbd
thrombomodulin
ISO
RGD
PMID:15307903
RGD:1580060
NCBI chr 3:135,863,366...135,867,018
Ensembl chr 3:135,862,835...135,867,193
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Thbs1
thrombospondin 1
IEP
protein:increased expression:spinal cord
RGD
PMID:19719963
RGD:2317939
NCBI chr 3:105,056,293...105,071,445
Ensembl chr 3:105,056,292...105,071,440
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Tlr1
toll-like receptor 1
treatment
ISO
mRNA:increased expression:spinal cord (mouse)
RGD
PMID:21970496 PMID:21970496
RGD:7246886 , RGD:7246886
NCBI chr14:43,384,127...43,396,765
Ensembl chr14:43,384,932...43,397,125
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Tlr4
toll-like receptor 4
severity
ISO
RGD
PMID:25990044
RGD:14700556
NCBI chr 5:80,145,867...80,159,501
Ensembl chr 5:80,145,826...80,159,628
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Tnc
tenascin C
IEP
mRNA:increased expression:spinal cord
RGD
PMID:11085900
RGD:4889619
NCBI chr 5:77,375,851...77,460,712
Ensembl chr 5:77,375,851...77,460,624
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Tnf
tumor necrosis factor
IMP
RGD
PMID:20633123
RGD:5131936
NCBI chr20:3,622,011...3,624,629
Ensembl chr20:3,622,011...3,624,629
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Tnfrsf1a
TNF receptor superfamily member 1A
IEP
protein:increased expression:cerebrospinal fluid
RGD
PMID:16083358
RGD:1624185
NCBI chr 4:158,150,815...158,163,592
Ensembl chr 4:158,150,820...158,163,591
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Tp53
tumor protein p53
IEP
protein:increased expression:spinal cord
RGD
PMID:23595775
RGD:10412063
NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524
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Traf7
TNF receptor associated factor 7
IEP
mRNA, protein:increased expression:spinal cord
RGD
PMID:30100091
RGD:151356968
NCBI chr10:13,533,570...13,552,290
Ensembl chr10:13,533,570...13,552,203
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Trpa1
transient receptor potential cation channel, subfamily A, member 1
IEP
mRNA,protein:increased expression:urinary bladder, dorsal root ganglion:
RGD
PMID:21367919
RGD:10043365
NCBI chr 5:4,379,862...4,434,133
Ensembl chr 5:4,379,999...4,433,570
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Trpm4
transient receptor potential cation channel, subfamily M, member 4
treatment
IEP
RGD
PMID:19169264 PMID:25763638
RGD:10003030 , RGD:12791993
NCBI chr 1:95,781,805...95,812,095
Ensembl chr 1:95,782,000...95,812,532
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Tug1
taurine up-regulated 1
treatment
IEP
RGD
PMID:30287503
RGD:38549580
NCBI chr14:78,519,894...78,526,927
Ensembl chr14:78,522,506...78,526,927
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Ulk1
unc-51 like autophagy activating kinase 1
IEP
protein:increased expression:neuron, axon
RGD
PMID:25040536
RGD:11553820
NCBI chr12:45,851,710...45,877,966
Ensembl chr12:45,851,710...45,877,966
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Vegfa
vascular endothelial growth factor A
IEP ISO
protein:increased expression:spinal cord CTD Direct Evidence: marker/mechanism
CTD RGD
PMID:21092735 PMID:21092735
RGD:5148013
NCBI chr 9:14,955,300...14,970,641
Ensembl chr 9:14,955,300...14,970,641
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Vhl
von Hippel-Lindau tumor suppressor
IDA
RGD
PMID:20125055
RGD:2325181
NCBI chr 4:146,772,483...146,779,376
Ensembl chr 4:146,772,468...146,779,377
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Vim
vimentin
ISO IEP
protein:increased expression:spinal cord
RGD
PMID:10225952 PMID:21250919
RGD:6480471 , RGD:6480511
NCBI chr17:76,668,701...76,677,186
Ensembl chr17:76,668,647...76,677,187
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Vwf
von Willebrand factor
IEP
RGD
PMID:25771801
RGD:13673888
NCBI chr 4:158,360,152...158,491,539
Ensembl chr 4:158,360,152...158,491,539
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Xbp1
X-box binding protein 1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:29793971
NCBI chr14:80,390,629...80,395,713
Ensembl chr14:80,390,643...80,395,693
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Xdh
xanthine dehydrogenase
IEP
protein:increased expression:spinal cord
RGD
PMID:1649310
RGD:13209021
NCBI chr 6:21,530,463...21,592,172
Ensembl chr 6:21,530,113...21,592,268
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Xylt1
xylosyltransferase 1
IMP
RGD
PMID:18765417
RGD:2313145
NCBI chr 1:171,643,925...171,929,774
Ensembl chr 1:171,643,925...171,926,783
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Plat
plasminogen activator, tissue type
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:1899364
NCBI chr16:69,240,582...69,265,177
Ensembl chr16:69,240,585...69,268,223
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Adam10
ADAM metallopeptidase domain 10
IEP
RGD
PMID:22489706
RGD:13703033
NCBI chr 8:71,346,008...71,477,889
Ensembl chr 8:71,345,837...71,477,889
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App
amyloid beta precursor protein
treatment
ISO
RGD
PMID:29320530
RGD:13782048
NCBI chr11:24,019,774...24,236,584
Ensembl chr11:24,019,778...24,236,561
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Bad
BCL2-associated agonist of cell death
treatment
IEP
RGD
PMID:24582457
RGD:13782254
NCBI chr 1:204,133,502...204,142,829
Ensembl chr 1:204,131,501...204,142,823
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Capn1
calpain 1
IEP
protein:increased expression:cytosol, plasma membrane
RGD
PMID:9469158
RGD:13792664
NCBI chr 1:203,275,912...203,300,848
Ensembl chr 1:203,277,344...203,300,177
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Capn2
calpain 2
IEP
RGD
PMID:9469158
RGD:13792664
NCBI chr13:94,150,244...94,200,969
Ensembl chr13:94,150,240...94,200,969
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Casp3
caspase 3
IEP
protein:increased expression:cerebral cortex
RGD
PMID:27614125
RGD:329961568
NCBI chr16:45,662,910...45,681,171
Ensembl chr16:45,662,910...45,684,648
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Ccng1
cyclin G1
treatment
IEP
RGD
PMID:24398934 PMID:18612315
RGD:151356934 , RGD:151356935
NCBI chr10:25,176,231...25,182,604
Ensembl chr10:25,176,234...25,181,641
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Cd163
CD163 molecule
IEP
protein:increased expression:brain, macrophage (rat)
RGD
PMID:22583855
RGD:127285798
NCBI chr 4:157,085,080...157,118,470
Ensembl chr 4:157,085,093...157,117,878
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Cd8a
CD8 subunit alpha
ISO
mRNA:increased expression:brain (mouse)
RGD
PMID:31383034
RGD:124715446
NCBI chr 4:103,365,804...103,370,041
Ensembl chr 4:103,365,804...103,370,040
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Cit
citron rho-interacting serine/threonine kinase
IEP
mRNA:decreased expression:cerebral cortex��(rat)
RGD
PMID:12503083
RGD:2317873
NCBI chr12:40,603,073...40,764,846
Ensembl chr12:40,605,563...40,763,860
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Cxcl10
C-X-C motif chemokine ligand 10
treatment
ISO
RGD
PMID:26435412
RGD:27095897
NCBI chr14:15,704,772...15,706,969
Ensembl chr14:15,704,758...15,706,975
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Cxcl12
C-X-C motif chemokine ligand 12
IEP
protein:increased expression:cerebral cortex
RGD
PMID:27614125
RGD:329961568
NCBI chr 4:150,388,326...150,401,173
Ensembl chr 4:150,388,325...150,401,168
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Cyp2d4
cytochrome P450, family 2, subfamily d, polypeptide 4
treatment
IEP
RGD
PMID:26068867
RGD:401901590
NCBI chr 7:113,882,584...113,891,754
Ensembl chr 7:113,881,618...113,891,759
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Drd1
dopamine receptor D1
treatment
IEP
RGD
PMID:24047867
RGD:13506948
NCBI chr17:10,540,440...10,544,971
Ensembl chr17:10,540,558...10,545,002
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Drd2
dopamine receptor D2
treatment
IEP
RGD
PMID:24047867
RGD:13506948
NCBI chr 8:49,708,927...49,772,876
Ensembl chr 8:49,708,927...49,772,875
G
Fto
FTO, alpha-ketoglutarate dependent dioxygenase
IEP
mRNA:decreased expression:cerebral cortex
RGD
PMID:31992337
RGD:329901857
NCBI chr19:15,284,898...15,692,142
Ensembl chr19:15,349,696...15,692,083
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Fubp1
far upstream element binding protein 1
IEP
RGD
PMID:23797733
RGD:13673879
NCBI chr 2:241,159,481...241,186,591
Ensembl chr 2:241,159,512...241,186,602
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Gnal
G protein subunit alpha L
IEP
RGD
PMID:29215295
RGD:13513923
NCBI chr18:60,622,311...60,762,599
Ensembl chr18:60,622,311...60,762,599
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Gria1
glutamate ionotropic receptor AMPA type subunit 1
IEP
protein:increased phosphorylation:central amygdaloid nucleus (rat)
RGD
PMID:30638118
RGD:405101698
NCBI chr10:41,210,713...41,527,283
Ensembl chr10:41,210,713...41,527,283
G
Icam1
intercellular adhesion molecule 1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:28642177
NCBI chr 8:19,553,063...19,565,438
Ensembl chr 8:19,553,645...19,565,438
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Il1b
interleukin 1 beta
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:28642177
NCBI chr 3:116,577,005...116,583,386
Ensembl chr 3:116,577,010...116,583,415
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Itgb1
integrin subunit beta 1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:25668593
NCBI chr19:56,705,123...56,753,199
Ensembl chr19:56,705,171...56,753,195
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Lama1
laminin subunit alpha 1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:25668593
NCBI chr 9:107,692,770...107,816,847
Ensembl chr 9:107,692,770...107,817,478
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Lamp2
lysosomal-associated membrane protein 2
IEP
protein:increased expression:hippocampus:
RGD
PMID:28365875
RGD:13703062
NCBI chr X:117,173,097...117,222,090
Ensembl chr X:117,057,606...117,260,522
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Lcn2
lipocalin 2
IEP
RGD
PMID:31539545
RGD:126781751
NCBI chr 3:15,680,688...15,684,033
Ensembl chr 3:15,680,687...15,684,095
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Mapt
microtubule-associated protein tau
treatment
IDA IEP
RGD
PMID:28412141 PMID:25771151 PMID:26484783 PMID:26729399
RGD:13800902 , RGD:13800917 , RGD:13800912 , RGD:13800909
NCBI chr10:89,138,644...89,236,137
Ensembl chr10:89,138,627...89,236,129
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Mettl14
methyltransferase 14, N6-adenosine-methyltransferase non-catalytic subunit
IEP
mRNA:decreased expression:cerebral cortex
RGD
PMID:31992337
RGD:329901857
NCBI chr 2:211,530,598...211,546,845
Ensembl chr 2:211,530,602...211,546,821
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Mir155
microRNA 155
ISO
RGD
PMID:28804446
RGD:25314324
NCBI chr11:23,774,654...23,774,718
Ensembl chr11:23,774,654...23,774,718
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Mmp2
matrix metallopeptidase 2
IEP
protein:increased expression:cerebral cortex
RGD
PMID:27614125
RGD:329961568
NCBI chr19:14,154,657...14,182,870
Ensembl chr19:14,154,657...14,182,870
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Mmp9
matrix metallopeptidase 9
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:25668593
NCBI chr 3:153,684,158...153,692,118
Ensembl chr 3:153,683,858...153,692,120
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Mpo
myeloperoxidase
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:25668593
NCBI chr10:72,594,883...72,608,862
Ensembl chr10:72,594,661...72,604,819
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Ncstn
nicastrin
ISO
RGD
PMID:18240300
RGD:13801189
NCBI chr13:84,530,442...84,546,454
Ensembl chr13:84,530,440...84,546,454
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Nfe2l2
NFE2 like bZIP transcription factor 2
IEP
protein:increased expression:brain:
RGD
PMID:30855558
RGD:26884463
NCBI chr 3:60,594,239...60,621,712
Ensembl chr 3:60,594,242...60,621,737
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Ngf
nerve growth factor
treatment
IMP
RGD
PMID:26285082
RGD:402463964
NCBI chr 2:189,901,058...189,954,452
Ensembl chr 2:189,901,058...189,954,452
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Nmnat1
nicotinamide nucleotide adenylyltransferase 1
ISO
CTD Direct Evidence: therapeutic
CTD
PMID:27822499
NCBI chr 5:159,910,242...159,928,201
Ensembl chr 5:159,910,242...159,928,180
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Nos2
nitric oxide synthase 2
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:28642177
NCBI chr10:63,815,308...63,851,208
Ensembl chr10:63,815,308...63,851,210
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Nox1
NADPH oxidase 1
IEP
protein:increased expression:cerebral cortex
RGD
PMID:27614125
RGD:329961568
NCBI chr X:97,279,058...97,332,291
Ensembl chr X:97,279,056...97,302,236
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Ocln
occludin
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:25668593
NCBI chr 2:31,657,217...31,707,466
Ensembl chr 2:31,657,220...31,764,150
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Parp1
poly (ADP-ribose) polymerase 1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:15829224 PMID:28642177
NCBI chr13:92,307,593...92,339,406
Ensembl chr13:92,307,586...92,339,404
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Pde10a
phosphodiesterase 10A
IEP
RGD
PMID:29215295
RGD:13513923
NCBI chr 1:51,765,743...52,218,086
Ensembl chr 1:51,770,132...52,216,563
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Pdyn
prodynorphin
IEP
mRNA:increased expression:hippocampus
RGD
PMID:12626770
RGD:633616
NCBI chr 3:116,900,990...116,913,334
Ensembl chr 3:116,900,992...116,913,334
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Phactr1
phosphatase and actin regulator 1
treatment
ISO
RGD
PMID:36571365
RGD:401901253
NCBI chr17:21,560,364...22,040,166
Ensembl chr17:21,562,721...22,039,831
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Ppp3r1
protein phosphatase 3, regulatory subunit B, alpha
IEP
RGD
PMID:20713027
RGD:13830881
NCBI chr14:91,556,743...91,606,391
Ensembl chr14:91,604,121...91,606,907
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Ppp3r2
protein phosphatase 3, regulatory subunit B, beta
IEP
RGD
PMID:20713027
RGD:13830881
NCBI chr 5:64,026,903...64,027,898
Ensembl chr 5:64,026,903...64,032,548
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Psen1
presenilin 1
ISO
RGD
PMID:18240300
RGD:13801189
NCBI chr 6:103,323,052...103,375,088
Ensembl chr 6:103,323,120...103,371,650
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Ptgs2
prostaglandin-endoperoxide synthase 2
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:28642177
NCBI chr13:62,163,936...62,172,193
Ensembl chr13:62,163,932...62,172,188
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Rela
RELA proto-oncogene, NF-kB subunit
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:25668593 PMID:28642177
NCBI chr 1:202,925,001...202,935,484
Ensembl chr 1:202,924,945...202,935,484
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Tgfb1
transforming growth factor, beta 1
treatment
IEP
RGD
PMID:28433746
RGD:14995478
NCBI chr 1:81,196,532...81,212,848
Ensembl chr 1:81,196,532...81,212,847
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Tnf
tumor necrosis factor
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:28642177
NCBI chr20:3,622,011...3,624,629
Ensembl chr20:3,622,011...3,624,629
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Tp53
tumor protein p53
treatment
IMP
RGD
PMID:27553877
RGD:14995939
NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524
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Ube4b
ubiquitination factor E4B
ISO
CTD Direct Evidence: therapeutic
CTD
PMID:27822499
NCBI chr 5:159,766,829...159,870,509
Ensembl chr 5:159,766,829...159,870,509
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F7
coagulation factor VII
ISO
CTD Direct Evidence: therapeutic
CTD
PMID:20370756
NCBI chr16:76,489,775...76,500,636
Ensembl chr16:76,489,717...76,500,610
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Abcc8
ATP binding cassette subfamily C member 8
treatment
IMP
RGD
PMID:18854840
RGD:2325137
NCBI chr 1:96,598,568...96,679,563
Ensembl chr 1:96,598,647...96,679,510
G
Tp53
tumor protein p53
IEP
RGD
PMID:22977862
RGD:8547771
NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524
G
Adrb2
adrenoceptor beta 2
IEP
mRNA:increased expression:Vestibulocochlear nerve:
RGD
PMID:22178544
RGD:8548530
NCBI chr18:55,642,459...55,644,501
Ensembl chr18:55,502,903...55,644,512
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