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Gene: Traf7 (TNF receptor associated factor 7) Rattus norvegicus

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Symbol:

Traf7

Name:

TNF receptor associated factor 7

RGD ID:

1559653

Description:

Predicted to enable ubiquitin protein ligase activity. Involved in positive regulation of neuron apoptotic process. Predicted to be located in several cellular components, including cytosol; perinuclear region of cytoplasm; and plasma membrane. Predicted to be part of ubiquitin ligase complex. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in adenomatoid tumor; hepatocellular carcinoma; and peritoneal mesothelioma. Orthologous to human TRAF7 (TNF receptor associated factor 7); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; ammonium chloride.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

E3 ubiquitin-protein ligase TRAF7; LOC360491; RGD1559653; similar to ring finger and WD repeat domain 1 isoform 1; Tnf receptor-associated factor 7; TNF receptor-associated factor 7, E3 ubiquitin protein ligase

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TRAF7 (TNF receptor associated factor 7)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Traf7 (TNF receptor-associated factor 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Traf7 (TNF receptor associated factor 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TRAF7 (TNF receptor associated factor 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TRAF7 (TNF receptor associated factor 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Traf7 (TNF receptor associated factor 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TRAF7 (TNF receptor associated factor 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TRAF7 (TNF receptor associated factor 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Traf7 (TNF receptor associated factor 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Traf7 (TNF receptor-associated factor 7)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	TRAF7 (TNF receptor associated factor 7)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	traf7 (TNF receptor-associated factor 7)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	traf7	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	14,038,117 - 14,056,832 (-)	NCBI		GRCr8
mRatBN7.2	10	13,533,570 - 13,552,290 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	13,533,570 - 13,552,203 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	18,280,130 - 18,298,622 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	17,768,975 - 17,787,467 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	13,268,162 - 13,286,654 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	13,874,444 - 13,893,090 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	13,874,456 - 13,892,997 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	13,691,429 - 13,710,062 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	13,760,687 - 13,779,228 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	10	13,213,849 - 13,232,354 (-)	NCBI		Celera
Cytogenetic Map	10	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Traf7	Rat	adenomatoid tumor		ISO	TRAF7 (Homo sapiens)	151356962	DNA:missense mutations:multiple	RGD
Traf7	Rat	hepatocellular carcinoma	treatment	ISO	TRAF7 (Homo sapiens)	151356961		RGD
Traf7	Rat	hepatocellular carcinoma		ISO	TRAF7 (Homo sapiens)	151356961	mRNA:increased expression:liver	RGD
Traf7	Rat	peritoneal mesothelioma		ISO	TRAF7 (Homo sapiens)	151356964	DNA:missense mutations:multiple	RGD
Traf7	Rat	Spinal Cord Injuries		IEP		151356968	mRNA and protein:increased expression:spinal cord	RGD

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Traf7	Rat	autosomal dominant polycystic kidney disease		ISO	TRAF7 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Autosomal dominant polycystic kidney disease	ClinVar	PMID:25741868
Traf7	Rat	Cardiac, Facial, and Digital Anomalies with Developmental Delay		ISO	TRAF7 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:25741868 more ...
Traf7	Rat	Cardiac, Facial, and Digital Anomalies with Developmental Delay		ISO	TRAF7 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:25741868 more ...
Traf7	Rat	developmental and epileptic encephalopathy 1		ISO	TRAF7 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Developmental and epileptic encephalopathy and 1	ClinVar	PMID:28492532 and PMID:30866059
Traf7	Rat	Developmental Disabilities		ISO	TRAF7 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Global developmental delay	ClinVar	PMID:25741868
Traf7	Rat	endometrial carcinoma		ISO	TRAF7 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Endometrial carcinoma	ClinVar
Traf7	Rat	epilepsy		ISO	TRAF7 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Epilepsy	ClinVar	PMID:28492532
Traf7	Rat	genetic disease		ISO	TRAF7 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Inborn genetic diseases	ClinVar	PMID:25741868 more ...
Traf7	Rat	Idiopathic Generalized Epilepsy		ISO	TRAF7 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Idiopathic generalized epilepsy	ClinVar	PMID:28492532
Traf7	Rat	short-rib thoracic dysplasia 9 with or without polydactyly		ISO	TRAF7 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Saldino-Mainzer syndrome	ClinVar	PMID:28492532
Traf7	Rat	tuberous sclerosis 2		ISO	TRAF7 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Tuberous sclerosis 2	ClinVar	PMID:11112665 more ...

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Traf7	Rat	malignant mesothelioma		ISO	TRAF7 (Homo sapiens)	11554173	CTD Direct Evidence: marker/mechanism	CTD	PMID:26928227

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Traf7	Rat	Cardiac, Facial, and Digital Anomalies with Developmental Delay		ISO	TRAF7 (Homo sapiens)	7240710		OMIM

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Traf7	Rat	1,2-dimethylhydrazine	multiple interactions	ISO	Traf7 (Mus musculus)	6480464	[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in increased expression of TRAF7 mRNA	CTD	PMID:22206623
Traf7	Rat	17alpha-ethynylestradiol	affects expression	ISO	Traf7 (Mus musculus)	6480464	Ethinyl Estradiol affects the expression of TRAF7 mRNA	CTD	PMID:17555576
Traf7	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	Traf7 (Mus musculus)	6480464	Tetrachlorodibenzodioxin affects the expression of TRAF7 mRNA	CTD	PMID:21570461 and PMID:24680724
Traf7	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	EXP		6480464	Tetrachlorodibenzodioxin results in increased expression of TRAF7 mRNA	CTD	PMID:34747641
Traf7	Rat	2,4-dinitrotoluene	affects expression	EXP		6480464	2 and 4-dinitrotoluene affects the expression of TRAF7 mRNA	CTD	PMID:21346803
Traf7	Rat	3,4-methylenedioxymethamphetamine	increases expression	ISO	Traf7 (Mus musculus)	6480464	N-Methyl-3 and 4-methylenedioxyamphetamine results in increased expression of TRAF7 mRNA	CTD	PMID:20188158
Traf7	Rat	all-trans-retinoic acid	decreases expression	ISO	TRAF7 (Homo sapiens)	6480464	Tretinoin results in decreased expression of TRAF7 mRNA	CTD	PMID:33167477
Traf7	Rat	ammonium chloride	affects expression	EXP		6480464	Ammonium Chloride affects the expression of TRAF7 mRNA	CTD	PMID:16483693
Traf7	Rat	benzo[a]pyrene	increases expression	ISO	Traf7 (Mus musculus)	6480464	Benzo(a)pyrene results in increased expression of TRAF7 mRNA	CTD	PMID:22228805
Traf7	Rat	benzo[a]pyrene	affects methylation	ISO	TRAF7 (Homo sapiens)	6480464	Benzo(a)pyrene affects the methylation of TRAF7 5' UTR	CTD	PMID:27901495
Traf7	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of TRAF7 mRNA	CTD	PMID:25181051 more ...
Traf7	Rat	bisphenol A	increases expression	ISO	TRAF7 (Homo sapiens)	6480464	bisphenol A results in increased expression of TRAF7 mRNA	CTD	PMID:29275510
Traf7	Rat	bisphenol F	decreases expression	ISO	Traf7 (Mus musculus)	6480464	bisphenol F results in decreased expression of TRAF7 mRNA	CTD	PMID:38685157
Traf7	Rat	cadmium atom	multiple interactions	ISO	TRAF7 (Homo sapiens)	6480464	[Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of TRAF7 mRNA	CTD	PMID:35301059
Traf7	Rat	cadmium dichloride	decreases expression	ISO	TRAF7 (Homo sapiens)	6480464	Cadmium Chloride results in decreased expression of TRAF7 mRNA	CTD	PMID:38568856
Traf7	Rat	cadmium dichloride	multiple interactions	ISO	TRAF7 (Homo sapiens)	6480464	[Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of TRAF7 mRNA	CTD	PMID:35301059
Traf7	Rat	caffeine	increases phosphorylation	ISO	TRAF7 (Homo sapiens)	6480464	Caffeine results in increased phosphorylation of TRAF7 protein	CTD	PMID:35688186
Traf7	Rat	chlorpyrifos	increases expression	ISO	Traf7 (Mus musculus)	6480464	Chlorpyrifos results in increased expression of TRAF7 mRNA	CTD	PMID:32715474 and PMID:37019170
Traf7	Rat	cisplatin	increases expression	ISO	Traf7 (Mus musculus)	6480464	Cisplatin results in increased expression of TRAF7 mRNA	CTD	PMID:21151649
Traf7	Rat	cisplatin	multiple interactions	ISO	TRAF7 (Homo sapiens)	6480464	Cisplatin promotes the reaction [jinfukang results in increased expression of TRAF7 mRNA] and jinfukang promotes the reaction [Cisplatin results in increased expression of TRAF7 mRNA]	CTD	PMID:27392435
Traf7	Rat	cobalt dichloride	decreases expression	ISO	TRAF7 (Homo sapiens)	6480464	cobaltous chloride results in decreased expression of TRAF7 mRNA	CTD	PMID:19320972
Traf7	Rat	CU-O LINKAGE	decreases expression	ISO	TRAF7 (Homo sapiens)	6480464	cupric oxide results in decreased expression of TRAF7 mRNA	CTD	PMID:22077320
Traf7	Rat	cyclosporin A	decreases methylation	ISO	TRAF7 (Homo sapiens)	6480464	Cyclosporine results in decreased methylation of TRAF7 promoter	CTD	PMID:27989131
Traf7	Rat	diazinon	increases methylation	ISO	TRAF7 (Homo sapiens)	6480464	Diazinon results in increased methylation of TRAF7 gene	CTD	PMID:22964155
Traf7	Rat	dicrotophos	increases expression	ISO	TRAF7 (Homo sapiens)	6480464	dicrotophos results in increased expression of TRAF7 mRNA	CTD	PMID:28302478
Traf7	Rat	ethanol	affects splicing	ISO	Traf7 (Mus musculus)	6480464	Ethanol affects the splicing of TRAF7 mRNA	CTD	PMID:30319688
Traf7	Rat	folic acid	multiple interactions	ISO	Traf7 (Mus musculus)	6480464	[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in increased expression of TRAF7 mRNA	CTD	PMID:22206623
Traf7	Rat	gentamycin	increases expression	EXP		6480464	Gentamicins results in increased expression of TRAF7 mRNA	CTD	PMID:22061828
Traf7	Rat	naphthalene	increases expression	ISO	Traf7 (Mus musculus)	6480464	naphthalene results in increased expression of TRAF7 mRNA	CTD	PMID:18978301
Traf7	Rat	nitrates	multiple interactions	ISO	Traf7 (Mus musculus)	6480464	[Particulate Matter results in increased abundance of Nitrates] which results in increased expression of TRAF7 mRNA	CTD	PMID:35964746
Traf7	Rat	ozone	multiple interactions	ISO	TRAF7 (Homo sapiens)	6480464	[Air Pollutants results in increased abundance of Ozone] which affects the expression of TRAF7 mRNA	CTD	PMID:35430440
Traf7	Rat	paracetamol	affects expression	ISO	Traf7 (Mus musculus)	6480464	Acetaminophen affects the expression of TRAF7 mRNA	CTD	PMID:17562736
Traf7	Rat	perfluorohexanesulfonic acid	decreases expression	ISO	Traf7 (Mus musculus)	6480464	perfluorohexanesulfonic acid results in decreased expression of TRAF7 mRNA	CTD	PMID:37995155
Traf7	Rat	sodium arsenite	decreases expression	ISO	TRAF7 (Homo sapiens)	6480464	sodium arsenite results in decreased expression of TRAF7 mRNA	CTD	PMID:38568856
Traf7	Rat	Soman	increases expression	EXP		6480464	Soman results in increased expression of TRAF7 mRNA	CTD	PMID:19281266
Traf7	Rat	tamoxifen	affects expression	ISO	Traf7 (Mus musculus)	6480464	Tamoxifen affects the expression of TRAF7 mRNA	CTD	PMID:17555576
Traf7	Rat	thioacetamide	increases expression	EXP		6480464	Thioacetamide results in increased expression of TRAF7 mRNA	CTD	PMID:34492290
Traf7	Rat	titanium dioxide	decreases methylation	ISO	Traf7 (Mus musculus)	6480464	titanium dioxide results in decreased methylation of TRAF7 gene	CTD	PMID:35295148
Traf7	Rat	triphenyl phosphate	affects expression	ISO	TRAF7 (Homo sapiens)	6480464	triphenyl phosphate affects the expression of TRAF7 mRNA	CTD	PMID:37042841
Traf7	Rat	triptonide	increases expression	ISO	Traf7 (Mus musculus)	6480464	triptonide results in increased expression of TRAF7 mRNA	CTD	PMID:33045310
Traf7	Rat	valproic acid	affects expression	ISO	Traf7 (Mus musculus)	6480464	Valproic Acid affects the expression of TRAF7 mRNA	CTD	PMID:17292431
Traf7	Rat	valproic acid	increases methylation	ISO	TRAF7 (Homo sapiens)	6480464	Valproic Acid results in increased methylation of TRAF7 gene	CTD	PMID:29154799

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Traf7	Rat	apoptotic process	involved_in	IBA	PANTHER:PTN008571510 and UniProtKB:Q6Q0C0	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Traf7	Rat	apoptotic process	acts_upstream_of_or_within	ISO	TRAF7 (Homo sapiens)	1624291	PMID:15001576	RGD	PMID:15001576
Traf7	Rat	apoptotic process	acts_upstream_of_or_within	IEA	UniProtKB:Q6Q0C0 and ensembl:ENSP00000318944	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Traf7	Rat	cellular response to interleukin-6	acts_upstream_of_or_within	ISO	Traf7 (Mus musculus)	1624291	PMID:16162816	RGD	PMID:16162816
Traf7	Rat	negative regulation of transcription by RNA polymerase II	acts_upstream_of_or_within	ISO	Traf7 (Mus musculus)	1624291	PMID:16162816	RGD	PMID:16162816
Traf7	Rat	positive regulation of apoptotic signaling pathway	involved_in	ISO	TRAF7 (Homo sapiens)	1624291	PMID:15001576	RGD	PMID:15001576
Traf7	Rat	positive regulation of apoptotic signaling pathway	involved_in	IEA	UniProtKB:Q6Q0C0 and ensembl:ENSP00000318944	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Traf7	Rat	positive regulation of MAPK cascade	acts_upstream_of_or_within	ISO	TRAF7 (Homo sapiens)	1624291	PMID:15001576	RGD	PMID:15001576
Traf7	Rat	positive regulation of MAPK cascade	acts_upstream_of_or_within	IEA	UniProtKB:Q6Q0C0 and ensembl:ENSP00000318944	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Traf7	Rat	positive regulation of MAPK cascade	involved_in	IBA	PANTHER:PTN008571510 and UniProtKB:Q6Q0C0	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Traf7	Rat	positive regulation of MAPK cascade	involved_in	ISO	TRAF7 (Homo sapiens)	1624291	PMID:14743216	RGD	PMID:14743216
Traf7	Rat	positive regulation of neuron apoptotic process		IMP		151356968		RGD
Traf7	Rat	positive regulation of protein sumoylation	acts_upstream_of_or_within	ISO	Traf7 (Mus musculus)	1624291	PMID:16162816	RGD	PMID:16162816
Traf7	Rat	positive regulation of ubiquitin-dependent protein catabolic process	involved_in	ISO	TRAF7 (Homo sapiens)	1624291	PMID:21518757	RGD	PMID:21518757
Traf7	Rat	positive regulation of ubiquitin-dependent protein catabolic process	involved_in	IEA	UniProtKB:Q6Q0C0 and ensembl:ENSP00000318944	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Traf7	Rat	protein K29-linked ubiquitination	involved_in	ISO	TRAF7 (Homo sapiens)	1624291	PMID:21518757	RGD	PMID:21518757
Traf7	Rat	protein K29-linked ubiquitination	involved_in	IEA	UniProtKB:Q6Q0C0 and ensembl:ENSP00000318944	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Traf7	Rat	protein ubiquitination	involved_in	ISO	TRAF7 (Homo sapiens)	1624291	PMID:14743216	RGD	PMID:14743216
Traf7	Rat	protein ubiquitination	involved_in	IEA	UniProtKB:Q6Q0C0 and ensembl:ENSP00000318944	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Traf7	Rat	regulation of ERK1 and ERK2 cascade	involved_in	ISO	TRAF7 (Homo sapiens)	1624291	PMID:29961569	RGD	PMID:29961569
Traf7	Rat	regulation of ERK1 and ERK2 cascade	involved_in	IEA	UniProtKB:Q6Q0C0 and ensembl:ENSP00000318944	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Traf7	Rat	regulation of ERK1 and ERK2 cascade	involved_in	IBA	PANTHER:PTN008571510 and UniProtKB:Q6Q0C0	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Traf7	Rat	regulation of protein localization	acts_upstream_of_or_within	ISO	Traf7 (Mus musculus)	1624291	PMID:16162816	RGD	PMID:16162816

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Traf7	Rat	cytosol	located_in	ISO	Traf7 (Mus musculus)	1624291	PMID:16162816	RGD	PMID:16162816
Traf7	Rat	intracellular membrane-bounded organelle	located_in	ISO	TRAF7 (Homo sapiens) and UniProtKB:Q6Q0C0-1	1624291		RGD	GO_REF:0000052
Traf7	Rat	intracellular membrane-bounded organelle	located_in	IEA	UniProtKB:Q6Q0C0 and ensembl:ENSP00000318944	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Traf7	Rat	nucleus	is_active_in	IBA	PANTHER:PTN000457354 and PANTHER:PTN008571510	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Traf7	Rat	nucleus	located_in	ISO	Traf7 (Mus musculus)	1624291	PMID:16162816	RGD	PMID:16162816
Traf7	Rat	perinuclear region of cytoplasm	located_in	ISO	Traf7 (Mus musculus)	1624291	PMID:16162816	RGD	PMID:16162816
Traf7	Rat	plasma membrane	located_in	IEA	UniProtKB:Q6Q0C0 and ensembl:ENSP00000318944	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Traf7	Rat	plasma membrane	located_in	ISO	TRAF7 (Homo sapiens) and UniProtKB:Q6Q0C0-1	1624291		RGD	GO_REF:0000052
Traf7	Rat	ubiquitin ligase complex	part_of	ISO	TRAF7 (Homo sapiens)	1624291	PMID:14743216	RGD	PMID:14743216
Traf7	Rat	ubiquitin ligase complex	part_of	IEA	UniProtKB:Q6Q0C0 and ensembl:ENSP00000318944	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Traf7	Rat	ubiquitin ligase complex	part_of	IBA	PANTHER:PTN008571510 and UniProtKB:Q6Q0C0	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Traf7	Rat	metal ion binding	enables	IEA	UniProtKB-KW:KW-0479	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Traf7	Rat	protein binding	enables	ISO	TRAF7 (Homo sapiens)	1624291	UniProtKB:Q99759 more ...	RGD	PMID:14743216 more ...
Traf7	Rat	protein binding	enables	ISO	Traf7 (Mus musculus)	1624291	PR:P06876 PMID:16162816	RGD	PMID:16162816
Traf7	Rat	ubiquitin protein ligase activity	enables	ISO	TRAF7 (Homo sapiens)	1624291	PMID:21518757	RGD	PMID:21518757
Traf7	Rat	ubiquitin protein ligase activity	enables	IEA	UniProtKB:Q6Q0C0 and ensembl:ENSP00000318944	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Traf7	Rat	ubiquitin-protein transferase activity	enables	ISO	TRAF7 (Homo sapiens)	1624291	PMID:14743216	RGD	PMID:14743216
Traf7	Rat	ubiquitin-protein transferase activity	enables	IEA	UniProtKB:Q6Q0C0 and ensembl:ENSP00000318944	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Traf7	Rat	zinc ion binding	enables	IEA	UniProtKB-KW:KW-0863	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Traf7	Rat	zinc ion binding	enables	IEA	InterPro:IPR001293	1600115	GO_REF:0000002	InterPro	GO_REF:0000002

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Adenomatoid tumors of the male and female genital tract are defined by TRAF7 mutations that drive aberrant NF-kB pathway activation.	Goode B, etal., Mod Pathol. 2018 Apr;31(4):660-673. doi: 10.1038/modpathol.2017.153. Epub 2017 Nov 17.
3.	TRAF7 enhances ubiquitin-degradation of KLF4 to promote hepatocellular carcinoma progression.	He H, etal., Cancer Lett. 2020 Jan 28;469:380-389. doi: 10.1016/j.canlet.2019.11.012. Epub 2019 Nov 12.
4.	GOA pipeline	RGD automated data pipeline
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Comprehensive gene review and curation	RGD comprehensive gene curation
7.	Well-differentiated papillary mesothelioma of the peritoneum is genetically defined by mutually exclusive mutations in TRAF7 and CDC42.	Stevers M, etal., Mod Pathol. 2019 Jan;32(1):88-99. doi: 10.1038/s41379-018-0127-2. Epub 2018 Aug 31.
8.	Up-regulation of TNF Receptor-associated Factor 7 after spinal cord injury in rats may have implication for neuronal apoptosis.	Xu D, etal., Neuropeptides. 2018 Oct;71:81-89. doi: 10.1016/j.npep.2018.08.001. Epub 2018 Aug 8.

PMID:12477932	PMID:14743216	PMID:15001576	PMID:16162816	PMID:29961569

Traf7
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	14,038,117 - 14,056,832 (-)	NCBI		GRCr8
mRatBN7.2	10	13,533,570 - 13,552,290 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	13,533,570 - 13,552,203 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	18,280,130 - 18,298,622 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	17,768,975 - 17,787,467 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	13,268,162 - 13,286,654 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	13,874,444 - 13,893,090 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	13,874,456 - 13,892,997 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	13,691,429 - 13,710,062 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	13,760,687 - 13,779,228 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	10	13,213,849 - 13,232,354 (-)	NCBI		Celera
Cytogenetic Map	10	q12	NCBI

TRAF7
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	2,155,782 - 2,178,129 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	2,155,698 - 2,178,129 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	2,205,783 - 2,228,130 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	2,145,800 - 2,168,131 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	16	2,420,218 - 2,442,550 (+)	NCBI		Celera
Cytogenetic Map	16	p13.3	NCBI
HuRef	16	2,132,066 - 2,154,384 (+)	NCBI		HuRef
CHM1_1	16	2,205,774 - 2,228,103 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	16	2,178,244 - 2,200,598 (+)	NCBI		T2T-CHM13v2.0

Traf7
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	24,727,824 - 24,746,912 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	24,727,536 - 24,746,912 (-)	Ensembl		GRCm39 Ensembl
GRCm38	17	24,508,850 - 24,527,938 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	24,508,562 - 24,527,938 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	24,645,795 - 24,664,883 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	24,236,450 - 24,255,430 (-)	NCBI		MGSCv36	mm8
Celera	17	25,024,825 - 25,044,110 (-)	NCBI		Celera
Cytogenetic Map	17	A3.3	NCBI
cM Map	17	12.4	NCBI

Traf7
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955442	15,092,955 - 15,112,840 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955442	15,092,955 - 15,112,842 (-)	NCBI	ChiLan1.0	ChiLan1.0

TRAF7
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	2,658,025 - 2,679,959 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	6,439,363 - 6,460,772 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	1,013,831 - 1,036,486 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	2,266,213 - 2,279,031 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	2,266,194 - 2,279,031 (+)	Ensembl	panpan1.1		panPan2

TRAF7
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	38,788,451 - 38,805,666 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	38,788,454 - 38,962,167 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	40,027,602 - 40,044,841 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	39,096,963 - 39,114,204 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	39,096,963 - 39,114,105 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	38,781,803 - 38,799,041 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	38,754,119 - 38,771,345 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	39,232,866 - 39,250,103 (-)	NCBI		UU_Cfam_GSD_1.0

Traf7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	104,822,976 - 104,841,154 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936694	1,868,309 - 1,886,772 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TRAF7
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	39,810,606 - 39,828,395 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	39,811,803 - 39,828,450 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	42,353,140 - 42,369,754 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TRAF7
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	2,051,247 - 2,072,763 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	2,059,349 - 2,071,297 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666068	28,989,286 - 29,010,804 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Traf7
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624913	79,423 - 100,279 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624913	79,423 - 100,301 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Traf7
32 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	34
Count of miRNA genes:	31
Interacting mature miRNAs:	32
Transcripts:	ENSRNOT00000004192
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
9589136	Insul27	Insulin level QTL 27	10.46	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	10	11474010	56474010	Rat
8662860	Vetf10	Vascular elastic tissue fragility QTL 10			artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	10	6154182	73453136	Rat
2313066	Bss63	Bone structure and strength QTL 63	1.4	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	10	5387014	50387014	Rat
631554	Bp133	Blood pressure QTL 133		0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	743364	63851208	Rat
2313064	Bmd71	Bone mineral density QTL 71	0.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	10	5387014	50387014	Rat
70223	Bp57	Blood pressure QTL 57	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	1	80676123	Rat
634329	Pia15	Pristane induced arthritis QTL 15	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	1	24158324	Rat
1578761	Stresp21	Stress response QTL 21	3.3		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	6375746	51375746	Rat
2293680	Bss40	Bone structure and strength QTL 40	5.66	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	10	1	35225947	Rat
7387235	Uae41	Urinary albumin excretion QTL 41	5.26	0.1874	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	10	1	29497586	Rat
2298544	Neuinf9	Neuroinflammation QTL 9	4.6		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	10	5801990	62146030	Rat
10401803	Kidm50	Kidney mass QTL 50			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	10	418344	45418344	Rat
737820	Alc9	Alcohol consumption QTL 9	2.2		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	10	5144027	19233348	Rat
2313081	Bss64	Bone structure and strength QTL 64	1.3	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	10	5387014	50387014	Rat
631828	Alc5	Alcohol consumption QTL 5	2.4		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	10	5144027	17245662	Rat
634327	Hc4	Hypercalciuria QTL 4	2.4		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	10	1	38328221	Rat
2313095	Bss62	Bone structure and strength QTL 62	1.5	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	5387014	50387014	Rat
631660	Hcar1	Hepatocarcinoma resistance QTL 1	3.4	0.0001	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	10	6154182	15990232	Rat
1576304	Schws7	Schwannoma susceptibility QTL 7		0.0115	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	10	4765527	19816042	Rat
7411611	Foco17	Food consumption QTL 17	18.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	10	1	42315980	Rat
2303118	Mamtr7	Mammary tumor resistance QTL 7		0.003	mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	10	9658275	104670812	Rat
9590268	Scort13	Serum corticosterone level QTL 13	3.26	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	11474010	56474010	Rat
2313104	Bss61	Bone structure and strength QTL 61	0.9	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	10	5387014	50387014	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6357896	96121100	Rat
9590310	Scort19	Serum corticosterone level QTL 19	6.3	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	11474010	56474010	Rat

RH130595

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	13,553,457 - 13,553,669 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	13,894,331 - 13,894,542	NCBI	Rnor6.0
Rnor_5.0	10	13,711,316 - 13,711,527	UniSTS	Rnor5.0
RGSC_v3.4	10	13,780,562 - 13,780,773	UniSTS	RGSC3.4
Celera	10	13,233,688 - 13,233,899	UniSTS
Cytogenetic Map	10	q12	UniSTS

RH132048

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	10	14,057,156 - 14,057,554 (+)	Marker Load Pipeline
mRatBN7.2	10	13,552,609 - 13,553,007 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	13,893,483 - 13,893,880	NCBI	Rnor6.0
Rnor_5.0	10	13,710,468 - 13,710,865	UniSTS	Rnor5.0
RGSC_v3.4	10	13,779,714 - 13,780,111	UniSTS	RGSC3.4
Celera	10	13,232,840 - 13,233,237	UniSTS
RH 3.4 Map	10	171.7	UniSTS
Cytogenetic Map	10	q12	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001127548	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001415153	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245983	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245987	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245991	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245992	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245993	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767584	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767585	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767586	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597366	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597367	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086269	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086271	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269306	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269307	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269308	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269309	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC103090	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC161916	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000004192 ⟹ ENSRNOP00000004192

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	13,533,582 - 13,552,124 (-)	Ensembl
Rnor_6.0 Ensembl	10	13,874,456 - 13,892,997 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000097263 ⟹ ENSRNOP00000094607

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	13,533,584 - 13,552,203 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100967 ⟹ ENSRNOP00000081332

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	13,533,586 - 13,543,746 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000107920 ⟹ ENSRNOP00000089242

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	13,533,582 - 13,542,578 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000115734 ⟹ ENSRNOP00000082217

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	13,533,570 - 13,552,125 (-)	Ensembl

RefSeq Acc Id:

NM_001127548 ⟹ NP_001121020

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	14,038,117 - 14,056,694 (-)	NCBI
mRatBN7.2	10	13,533,570 - 13,552,147 (-)	NCBI
Rnor_6.0	10	13,874,456 - 13,892,997 (-)	NCBI
Rnor_5.0	10	13,691,429 - 13,710,062 (-)	NCBI
RGSC_v3.4	10	13,760,687 - 13,779,228 (-)	RGD
Celera	10	13,213,849 - 13,232,354 (-)	RGD

Sequence:

show sequence

GGCAGAGAGGGGCAAGATGATGCCGGAGGGTGTAGCCGCTGCTCCCAGGCAGCTGCGGGCGGGGGACACTGCCCAAGGACCCTGGATGCCTCTCTAGAGCATGAGCTCAGCCAAGAGTGCCCGCTACA
ACCGCTTCTCCGGGGGGCCTGCCAACCTTCCTGCCTCAGACAGCAGTGGGACCAGGATGGAAACAACCTTTGGGCCTACCTTTTCGACCGTCACCACCATTACCAAAGCTGATGGGACCAGCACATAC
AAACAGCATCGCAGGACGCCTTCCTCCTCTAGCACCCTTGCCTATTCGCCACGGGATGAGGAGGACGGCATGCCCCCCATCAACACTCCTCGCCGCTCTGACTCAGCCATCTCTGTCCGCTCCCTGCA
CTCCGAGTCCAGCATGTCCCTGCGCTCCACGTTCTCGCTGCCTGAGGAGGAAGAGGAGCCGGAGCCATTGGTGTTTGCGGAGCAGCCCTCGGTGAAGCTGTGCTGCCAGCTCTGCTGCAGTGTGTTCA
AGGACCCTGTGATCACTACGTGTGGGCACACCTTCTGCAGACGATGCGCCTTGAAGTCAGAGAAGTGTCCTGTGGACAATGCCAAGCTGACAGTGGTGGTAAACAACATTGCAGTAGCTGAGCAGATT
GGAGAGCTCTTCATACATTGTCGGCATGGCTGCCGTGCAGCAGGCACTGGGAAGCCCGGTGTCTTTGAGGTAGACCCAAGGGGCTGCCCCTTCACCATCAAGCTTAGTGCCCGGAAGGACCACGAGAG
TAGTTGTGACTACAGGCCTGTGCGCTGCCCCAACAACCCCAGCTGCCCACCCCTTCTCAAGATGAACCTCGAGGCCCACCTGAAAGAATGCGAGCACATCAAGTGTCCCCACTCTAAGTACGGGTGCA
CATTTATTGGGAATCAGGACACCTATGAGACGCACTTAGAAACATGTCGCTTTGAGGGCCTGAAGGAATTCCTGCAGCAGACCGATGACCGCTTCCACGAGATGCATGTGGCACTGGCCCAGAAGGAC
CAGGAGATTGCCTTTCTGCGTTCCATGCTGGGCAAACTCTCAGAGAAGATTGACCAGCTGGAGAAAAGCCTTGAGCTCAAGTTCGATGTCCTCGATGAGAACCAGAGCAAGCTCAGTGAGGACCTCAT
GGAATTCCGGAGGGATGCATCCATGTTGAATGATGAGCTGTCTCATATCAATGCACGCCTGAACATGGGTATCCTGGGATCCTATGATCCTCAGCAGATCTTCAAGTGCAAAGGGACCTTCGTGGGAC
ACCAGGGCCCTGTCTGGTGTCTCTGTGTCTACTCCATGGGTGACCTGCTCTTCAGTGGCTCTTCTGACAAGACGATCAAGGTGTGGGACACGTGTACCACTTACAAGTGCCAAAAGACACTGGAAGGT
CATGACGGTATTGTGCTGGCGCTCTGTATCCAGGGGTGCAAACTGTACAGTGGGTCTGCAGACTGCACCATCATTGTATGGGACATCCAGAACCTGCAGAAGGTGAACACCATCCGGGCCCATGACAA
CCCTGTGTGCACACTGGTGTCTTCCCATAACATGCTCTTCAGTGGCTCCCTTAAAGCCATCAAGGTCTGGGACATCGTGGGCACTGAGCTAAAGTTGAAGAAGGAACTCACAGGCCTCAACCACTGGG
TGCGGGCCTTGGTGGCAGCACAGAGCTATCTGTACAGTGGCTCTTACCAGACAATCAAGATCTGGGACATTCGGACCCTTGACTGCATCCATGTCCTGCAGACATCTGGTGGCAGTGTGTATTCCATT
GCTGTGACGAATCACCACATTGTCTGTGGCACCTATGAGAACCTCATTCATGTATGGGACATTGAATCCAAAGAGCAGGTGCGGACCCTAACGGGCCATGTGGGCACAGTATATGCCCTGGCAGTCAT
TTCAACACCAGACCAGACCAAAGTCTTCAGCGCATCCTATGACCGCTCCCTCAGGGTCTGGAGCATGGACAACATGATCTGCACACAGACGCTGCTGCGCCATCAGGGCAGTGTAACTGCACTGGCTG
TCTCCCGGGGCCGGCTCTTCTCGGGGGCTGTGGATAGCACCGTGAAGGTTTGGACATGCTAACAGAATCCAGGCCAGGCTTGACTCCTTCTGGGTCTGTAAGTCAGGCTGGACCTCCATGATGGCCTT
GGAATGTCCGCCTGTCCTGTGGAGACAGGTAGACAGGCTCAAACAGCTAGGCAGTGTCCTCTCTGCCTCTGCTCAGTGCGGGGTCTTTCATAAGGCCTCACTCTTACTTCTACCAGAGAAATGCCCAG
GCCCTGCTCTGGGCGCCAGGTACGATGCTTGCCCGGCCCCACCATTCATATCACTCCATAGACTTTTGTTTTGAGACAGGGTCTCACTATGTAGCTCTGGCTTGCCTGGAACTCACTGTCAACCAGGC
TGGCCTCAAACTCACAGATCTGCCTGCCTCCACCTCCCAAGTGCTGGGAGTAAAGGCATGTGCCACCGCCCCTGGCTGGACCCAGATGGACCATGGGTCCTTTTTACTCACCTTTTCTACTGGTTTTA
GACTGTATATAGATTTTATTACTTCCCTGTTGAAATAAAAGCTGCACAGACTGTGAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001415153 ⟹ NP_001402082

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	14,038,117 - 14,056,694 (-)	NCBI
mRatBN7.2	10	13,533,570 - 13,552,147 (-)	NCBI

RefSeq Acc Id:

XM_006245983 ⟹ XP_006246045

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	14,038,129 - 14,056,759 (-)	NCBI
mRatBN7.2	10	13,533,570 - 13,552,219 (-)	NCBI
Rnor_6.0	10	13,874,456 - 13,893,088 (-)	NCBI
Rnor_5.0	10	13,691,429 - 13,710,062 (-)	NCBI

Sequence:

show sequence

TAGAGTTCCTGAAGTCGGTGAACTACAAGTTCCGACGTGCACAGTGCCCGGGGACTTCCGGCTCCTGTATCCTGTACCTTTCCCGGCCCCGGGCCGAGAGGGGCAAGATGATGCCGGAGGGTGTAGCC
GCTGCTCCCAGGCAGCTGCGGGCGGGGGACACTGCCCAAGGACCCTGGATGCCTCTCTAGAGCATGAGCTCAGCCAAGAGTGCCCGCTACAACCGCTTCTCCGGGGGGCCTGCCAACCTTCCTGCCTC
AGACAGCAGTGGGACCAGGATGGAAACAACCTTTGGGCCTACCTTTTCGACCGTCACCACCATTACCAAAGCAGCTGATGGGACCAGCACATACAAACAGCATCGCAGGACGCCTTCCTCCTCTAGCA
CCCTTGCCTATTCGCCACGGGATGAGGAGGACGGCATGCCCCCCATCAACACTCCTCGCCGCTCTGACTCAGCCATCTCTGTCCGCTCCCTGCACTCCGAGTCCAGCATGTCCCTGCGCTCCACGTTC
TCGCTGCCTGAGGAGGAAGAGGAGCCGGAGCCATTGGTGTTTGCGGAGCAGCCCTCGGTGAAGCTGTGCTGCCAGCTCTGCTGCAGTGTGTTCAAGGACCCTGTGATCACTACGTGTGGGCACACCTT
CTGCAGACGATGCGCCTTGAAGTCAGAGAAGTGTCCTGTGGACAATGCCAAGCTGACAGTGGTGGTAAACAACATTGCAGTAGCTGAGCAGATTGGAGAGCTCTTCATACATTGTCGGCATGGCTGCC
GTGCAGCAGGCACTGGGAAGCCCGGTGTCTTTGAGGTAGACCCAAGGGGCTGCCCCTTCACCATCAAGCTTAGTGCCCGGAAGGACCACGAGAGTAGTTGTGACTACAGGCCTGTGCGCTGCCCCAAC
AACCCCAGCTGCCCACCCCTTCTCAAGATGAACCTCGAGGCCCACCTGAAAGAATGCGAGCACATCAAGTGTCCCCACTCTAAGTGCACATTTATTGGGAATCAGGACACCTATGAGACGCACTTAGA
AACATGTCGCTTTGAGGGCCTGAAGGAATTCCTGCAGCAGACCGATGACCGCTTCCACGAGATGCATGTGGCACTGGCCCAGAAGGACCAGGAGATTGCCTTTCTGCGTTCCATGCTGGGCAAACTCT
CAGAGAAGATTGACCAGCTGGAGAAAAGCCTTGAGCTCAAGTTCGATGTCCTCGATGAGAACCAGAGCAAGCTCAGTGAGGACCTCATGGAATTCCGGAGGGATGCATCCATGTTGAATGATGAGCTG
TCTCATATCAATGCACGCCTGAACATGGGTATCCTGGGATCCTATGATCCTCAGCAGATCTTCAAGTGCAAAGGGACCTTCGTGGGACACCAGGGCCCTGTCTGGTGTCTCTGTGTCTACTCCATGGG
TGACCTGCTCTTCAGTGGCTCTTCTGACAAGACGATCAAGGTGTGGGACACGTGTACCACTTACAAGTGCCAAAAGACACTGGAAGGTCATGACGGTATTGTGCTGGCGCTCTGTATCCAGGGGTGCA
AACTGTACAGTGGGTCTGCAGACTGCACCATCATTGTATGGGACATCCAGAACCTGCAGAAGGTGAACACCATCCGGGCCCATGACAACCCTGTGTGCACACTGGTGTCTTCCCATAACATGCTCTTC
AGTGGCTCCCTTAAAGCCATCAAGGTCTGGGACATCGTGGGCACTGAGCTAAAGTTGAAGAAGGAACTCACAGGCCTCAACCACTGGGTGCGGGCCTTGGTGGCAGCACAGAGCTATCTGTACAGTGG
CTCTTACCAGACAATCAAGATCTGGGACATTCGGACCCTTGACTGCATCCATGTCCTGCAGACATCTGGTGGCAGTGTGTATTCCATTGCTGTGACGAATCACCACATTGTCTGTGGCACCTATGAGA
ACCTCATTCATGTATGGGACATTGAATCCAAAGAGCAGGTGCGGACCCTAACGGGCCATGTGGGCACAGTATATGCCCTGGCAGTCATTTCAACACCAGACCAGACCAAAGTCTTCAGCGCATCCTAT
GACCGCTCCCTCAGGGTCTGGAGCATGGACAACATGATCTGCACACAGACGCTGCTGCGCCATCAGGGCAGTGTAACTGCACTGGCTGTCTCCCGGGGCCGGCTCTTCTCGGGGGCTGTGGATAGCAC
CGTGAAGGTTTGGACATGCTAACAGAATCCAGGCCAGGCTTGACTCCTTCTGGGTCTGTAAGTCAGGCTGGACCTCCATGATGGCCTTGGAATGTCCGCCTGTCCTGTGGAGACAGGTAGACAGGCTC
AAACAGCTAGGCAGTGTCCTCTCTGCCTCTGCTCAGTGCGGGGTCTTTCATAAGGCCTCACTCTTACTTCTACCAGAGAAATGCCCAGGCCCTGCTCTGGGCGCCAGGTACGATGCTTGCCCGGCCCC
ACCATTCATATCACTCCATAGACTTTTGTTTTGAGACAGGGTCTCACTATGTAGCTCTGGCTTGCCTGGAACTCACTGTCAACCAGGCTGGCCTCAAACTCACAGATCTGCCTGCCTCCACCTCCCAA
GTGCTGGGAGTAAAGGCATGTGCCACCGCCCCTGGCTGGACCCAGATGGACCATGGGTCCTTTTTACTCACCTTTTCTACTGGTTTTAGACTGTATATAGATTTTATTACTTCCCTGTTGAAATAAAA
GCTGCACAGACTGTG

hide sequence

RefSeq Acc Id:

XM_006245985 ⟹ XP_006246047

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	14,038,129 - 14,048,274 (-)	NCBI
mRatBN7.2	10	13,533,570 - 13,543,746 (-)	NCBI
Rnor_6.0	10	13,874,444 - 13,884,573 (-)	NCBI
Rnor_5.0	10	13,691,429 - 13,710,062 (-)	NCBI

Sequence:

show sequence

AGCCAAGAGTGCCCGCTACAACCGCTTCTCCGGGGGGCCTGCCAACCTTCCTGCCTCAGACAGC
AGTGGGGTAAGAGAAGAGCCTGTAGACCAGGATGGAAACAACCTTTGGGCCTACCTTTTCGACCGTCACCACCATTACCAAAGCAGCTGATGGGACCAGCACATACAAACAGCATCGCAGGACGCCTT
CCTCCTCTAGCACCCTTGCCTATTCGCCACGGGATGAGGAGGACGGCATGCCCCCCATCAACACTCCTCGCCGCTCTGACTCAGCCATCTCTGTCCGCTCCCTGCACTCCGAGTCCAGCATGTCCCTG
CGCTCCACGTTCTCGCTGCCTGAGGAGGAAGAGGAGCCGGAGCCATTGGTGTTTGCGGAGCAGCCCTCGGTGAAGCTGTGCTGCCAGCTCTGCTGCAGTGTGTTCAAGGACCCTGTGATCACTACGTG
TGGGCACACCTTCTGCAGACGATGCGCCTTGAAGTCAGAGAAGTGTCCTGTGGACAATGCCAAGCTGACAGTGGTGGTAAACAACATTGCAGTAGCTGAGCAGATTGGAGAGCTCTTCATACATTGTC
GGCATGGCTGCCGTGCAGCAGGCACTGGGAAGCCCGGTGTCTTTGAGGTAGACCCAAGGGGCTGCCCCTTCACCATCAAGCTTAGTGCCCGGAAGGACCACGAGAGTAGTTGTGACTACAGGCCTGTG
CGCTGCCCCAACAACCCCAGCTGCCCACCCCTTCTCAAGATGAACCTCGAGGCCCACCTGAAAGAATGCGAGCACATCAAGTGTCCCCACTCTAAGTACGGGTGCACATTTATTGGGAATCAGGACAC
CTATGAGACGCACTTAGAAACATGTCGCTTTGAGGGCCTGAAGGAATTCCTGCAGCAGACCGATGACCGCTTCCACGAGATGCATGTGGCACTGGCCCAGAAGGACCAGGAGATTGCCTTTCTGCGTT
CCATGCTGGGCAAACTCTCAGAGAAGATTGACCAGCTGGAGAAAAGCCTTGAGCTCAAGTTCGATGTCCTCGATGAGAACCAGAGCAAGCTCAGTGAGGACCTCATGGAATTCCGGAGGGATGCATCC
ATGTTGAATGATGAGCTGTCTCATATCAATGCACGCCTGAACATGGGTATCCTGGGATCCTATGATCCTCAGCAGATCTTCAAGTGCAAAGGGACCTTCGTGGGACACCAGGGCCCTGTCTGGTGTCT
CTGTGTCTACTCCATGGGTGACCTGCTCTTCAGTGGCTCTTCTGACAAGACGATCAAGGTGTGGGACACGTGTACCACTTACAAGTGCCAAAAGACACTGGAAGGTCATGACGGTATTGTGCTGGCGC
TCTGTATCCAGGGGTGCAAACTGTACAGTGGGTCTGCAGACTGCACCATCATTGTATGGGACATCCAGAACCTGCAGAAGGTGAACACCATCCGGGCCCATGACAACCCTGTGTGCACACTGGTGTCT
TCCCATAACATGCTCTTCAGTGGCTCCCTTAAAGCCATCAAGGTCTGGGACATCGTGGGCACTGAGCTAAAGTTGAAGAAGGAACTCACAGGCCTCAACCACTGGGTGCGGGCCTTGGTGGCAGCACA
GAGCTATCTGTACAGTGGCTCTTACCAGACAATCAAGATCTGGGACATTCGGACCCTTGACTGCATCCATGTCCTGCAGACATCTGGTGGCAGTGTGTATTCCATTGCTGTGACGAATCACCACATTG
TCTGTGGCACCTATGAGAACCTCATTCATGTATGGGACATTGAATCCAAAGAGCAGGTGCGGACCCTAACGGGCCATGTGGGCACAGTATATGCCCTGGCAGTCATTTCAACACCAGACCAGACCAAA
GTCTTCAGCGCATCCTATGACCGCTCCCTCAGGGTCTGGAGCATGGACAACATGATCTGCACACAGACGCTGCTGCGCCATCAGGGCAGTGTAACTGCACTGGCTGTCTCCCGGGGCCGGCTCTTCTC
GGGGGCTGTGGATAGCACCGTGAAGGTTTGGACATGCTAACAGAATCCAGGCCAGGCTTGACTCCTTCTGGGTCTGTAAGTCAGGCTGGACCTCCATGATGGCCTTGGAATGTCCGCCTGTCCTGTGG
AGACAGGTAGACAGGCTCAAACAGCTAGGCAGTGTCCTCTCTGCCTCTGCTCAGTGCGGGGTCTTTCATAAGGCCTCACTCTTACTTCTACCAGAGAAATGCCCAGGCCCTGCTCTGGGCGCCAGGTA
CGATGCTTGCCCGGCCCCACCATTCATATCACTCCATAGACTTTTGTTTTGAGACAGGGTCTCACTATGTAGCTCTGGCTTGCCTGGAACTCACTGTCAACCAGGCTGGCCTCAAACTCACAGATCTG
CCTGCCTCCACCTCCCAAGTGCTGGGAGTAAAGGCATGTGCCACCGCCCCTGGCTGGACCCAGATGGACCATGGGTCCTTTTTACTCACCTTTTCTACTGGTTTTAGACTGTATATAGATTTTATTAC
TTCCCTGTTGAAATAAAAGCTGCACAGACTGTGGTTGTGAGTGGA

hide sequence

RefSeq Acc Id:

XM_006245987 ⟹ XP_006246049

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	14,038,129 - 14,048,274 (-)	NCBI
mRatBN7.2	10	13,533,570 - 13,543,746 (-)	NCBI
Rnor_6.0	10	13,874,444 - 13,884,573 (-)	NCBI
Rnor_5.0	10	13,691,429 - 13,710,062 (-)	NCBI

Sequence:

show sequence

AGCCAAGAGTGCCCGCTACAACCGCTTCTCCGGGGGGCCTGCCAACCTTCCTGCCTCAGACAGC
AGTGGGGTAAGAGAAGAGCCTGTAGACCAGGATGGAAACAACCTTTGGGCCTACCTTTTCGACCGTCACCACCATTACCAAAGCTGATGGGACCAGCACATACAAACAGCATCGCAGGACGCCTTCCT
CCTCTAGCACCCTTGCCTATTCGCCACGGGATGAGGAGGACGGCATGCCCCCCATCAACACTCCTCGCCGCTCTGACTCAGCCATCTCTGTCCGCTCCCTGCACTCCGAGTCCAGCATGTCCCTGCGC
TCCACGTTCTCGCTGCCTGAGGAGGAAGAGGAGCCGGAGCCATTGGTGTTTGCGGAGCAGCCCTCGGTGAAGCTGTGCTGCCAGCTCTGCTGCAGTGTGTTCAAGGACCCTGTGATCACTACGTGTGG
GCACACCTTCTGCAGACGATGCGCCTTGAAGTCAGAGAAGTGTCCTGTGGACAATGCCAAGCTGACAGTGGTGGTAAACAACATTGCAGTAGCTGAGCAGATTGGAGAGCTCTTCATACATTGTCGGC
ATGGCTGCCGTGCAGCAGGCACTGGGAAGCCCGGTGTCTTTGAGGTAGACCCAAGGGGCTGCCCCTTCACCATCAAGCTTAGTGCCCGGAAGGACCACGAGAGTAGTTGTGACTACAGGCCTGTGCGC
TGCCCCAACAACCCCAGCTGCCCACCCCTTCTCAAGATGAACCTCGAGGCCCACCTGAAAGAATGCGAGCACATCAAGTGTCCCCACTCTAAGTACGGGTGCACATTTATTGGGAATCAGGACACCTA
TGAGACGCACTTAGAAACATGTCGCTTTGAGGGCCTGAAGGAATTCCTGCAGCAGACCGATGACCGCTTCCACGAGATGCATGTGGCACTGGCCCAGAAGGACCAGGAGATTGCCTTTCTGCGTTCCA
TGCTGGGCAAACTCTCAGAGAAGATTGACCAGCTGGAGAAAAGCCTTGAGCTCAAGTTCGATGTCCTCGATGAGAACCAGAGCAAGCTCAGTGAGGACCTCATGGAATTCCGGAGGGATGCATCCATG
TTGAATGATGAGCTGTCTCATATCAATGCACGCCTGAACATGGGTATCCTGGGATCCTATGATCCTCAGCAGATCTTCAAGTGCAAAGGGACCTTCGTGGGACACCAGGGCCCTGTCTGGTGTCTCTG
TGTCTACTCCATGGGTGACCTGCTCTTCAGTGGCTCTTCTGACAAGACGATCAAGGTGTGGGACACGTGTACCACTTACAAGTGCCAAAAGACACTGGAAGGTCATGACGGTATTGTGCTGGCGCTCT
GTATCCAGGGGTGCAAACTGTACAGTGGGTCTGCAGACTGCACCATCATTGTATGGGACATCCAGAACCTGCAGAAGGTGAACACCATCCGGGCCCATGACAACCCTGTGTGCACACTGGTGTCTTCC
CATAACATGCTCTTCAGTGGCTCCCTTAAAGCCATCAAGGTCTGGGACATCGTGGGCACTGAGCTAAAGTTGAAGAAGGAACTCACAGGCCTCAACCACTGGGTGCGGGCCTTGGTGGCAGCACAGAG
CTATCTGTACAGTGGCTCTTACCAGACAATCAAGATCTGGGACATTCGGACCCTTGACTGCATCCATGTCCTGCAGACATCTGGTGGCAGTGTGTATTCCATTGCTGTGACGAATCACCACATTGTCT
GTGGCACCTATGAGAACCTCATTCATGTATGGGACATTGAATCCAAAGAGCAGGTGCGGACCCTAACGGGCCATGTGGGCACAGTATATGCCCTGGCAGTCATTTCAACACCAGACCAGACCAAAGTC
TTCAGCGCATCCTATGACCGCTCCCTCAGGGTCTGGAGCATGGACAACATGATCTGCACACAGACGCTGCTGCGCCATCAGGGCAGTGTAACTGCACTGGCTGTCTCCCGGGGCCGGCTCTTCTCGGG
GGCTGTGGATAGCACCGTGAAGGTTTGGACATGCTAACAGAATCCAGGCCAGGCTTGACTCCTTCTGGGTCTGTAAGTCAGGCTGGACCTCCATGATGGCCTTGGAATGTCCGCCTGTCCTGTGGAGA
CAGGTAGACAGGCTCAAACAGCTAGGCAGTGTCCTCTCTGCCTCTGCTCAGTGCGGGGTCTTTCATAAGGCCTCACTCTTACTTCTACCAGAGAAATGCCCAGGCCCTGCTCTGGGCGCCAGGTACGA
TGCTTGCCCGGCCCCACCATTCATATCACTCCATAGACTTTTGTTTTGAGACAGGGTCTCACTATGTAGCTCTGGCTTGCCTGGAACTCACTGTCAACCAGGCTGGCCTCAAACTCACAGATCTGCCT
GCCTCCACCTCCCAAGTGCTGGGAGTAAAGGCATGTGCCACCGCCCCTGGCTGGACCCAGATGGACCATGGGTCCTTTTTACTCACCTTTTCTACTGGTTTTAGACTGTATATAGATTTTATTACTTC
CCTGTTGAAATAAAAGCTGCACAGACTGTGGTTGTGAGTGGA

hide sequence

RefSeq Acc Id:

XM_006245991 ⟹ XP_006246053

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	14,038,129 - 14,048,287 (-)	NCBI
mRatBN7.2	10	13,533,570 - 13,543,740 (-)	NCBI
Rnor_6.0	10	13,874,456 - 13,884,510 (-)	NCBI
Rnor_5.0	10	13,691,429 - 13,710,062 (-)	NCBI

Sequence:

show sequence

CAGTGGGGTAAGAGAAGAGCCTGTAGACCAGGATGGAAACAACCTTTGGGCCTACCTTTTCGAC
CGTCACCACCATTACCAAAGCAGCTGATGGGACCAGCACATACAAACAGCATCGCAGGACGCCTTCCTCCTCTAGCACCCTTGCCTATTCGCCACGGGATGAGGAGGACGGCATGGGCTCAACCCCCT
GACAGGCTGCCTCCATCTGTGCAGCCCCCCATCAACACTCCTCGCCGCTCTGACTCAGCCATCTCTGTCCGCTCCCTGCACTCCGAGTCCAGCATGTCCCTGCGCTCCACGTTCTCGCTGCCTGAGGA
GGAAGAGGAGCCGGAGCCATTGGTGTTTGCGGAGCAGCCCTCGGTGAAGCTGTGCTGCCAGCTCTGCTGCAGTGTGTTCAAGGACCCTGTGATCACTACGTGTGGGCACACCTTCTGCAGACGATGCG
CCTTGAAGTCAGAGAAGTGTCCTGTGGACAATGCCAAGCTGACAGTGGTGGTAAACAACATTGCAGTAGCTGAGCAGATTGGAGAGCTCTTCATACATTGTCGGCATGGCTGCCGTGCAGCAGGCACT
GGGAAGCCCGGTGTCTTTGAGGTAGACCCAAGGGGCTGCCCCTTCACCATCAAGCTTAGTGCCCGGAAGGACCACGAGAGTAGTTGTGACTACAGGCCTGTGCGCTGCCCCAACAACCCCAGCTGCCC
ACCCCTTCTCAAGATGAACCTCGAGGCCCACCTGAAAGAATGCGAGCACATCAAGTGTCCCCACTCTAAGTACGGGTGCACATTTATTGGGAATCAGGACACCTATGAGACGCACTTAGAAACATGTC
GCTTTGAGGGCCTGAAGGAATTCCTGCAGCAGACCGATGACCGCTTCCACGAGATGCATGTGGCACTGGCCCAGAAGGACCAGGAGATTGCCTTTCTGCGTTCCATGCTGGGCAAACTCTCAGAGAAG
ATTGACCAGCTGGAGAAAAGCCTTGAGCTCAAGTTCGATGTCCTCGATGAGAACCAGAGCAAGCTCAGTGAGGACCTCATGGAATTCCGGAGGGATGCATCCATGTTGAATGATGAGCTGTCTCATAT
CAATGCACGCCTGAACATGGGTATCCTGGGATCCTATGATCCTCAGCAGATCTTCAAGTGCAAAGGGACCTTCGTGGGACACCAGGGCCCTGTCTGGTGTCTCTGTGTCTACTCCATGGGTGACCTGC
TCTTCAGTGGCTCTTCTGACAAGACGATCAAGGTGTGGGACACGTGTACCACTTACAAGTGCCAAAAGACACTGGAAGGTCATGACGGTATTGTGCTGGCGCTCTGTATCCAGGGGTGCAAACTGTAC
AGTGGGTCTGCAGACTGCACCATCATTGTATGGGACATCCAGAACCTGCAGAAGGTGAACACCATCCGGGCCCATGACAACCCTGTGTGCACACTGGTGTCTTCCCATAACATGCTCTTCAGTGGCTC
CCTTAAAGCCATCAAGGTCTGGGACATCGTGGGCACTGAGCTAAAGTTGAAGAAGGAACTCACAGGCCTCAACCACTGGGTGCGGGCCTTGGTGGCAGCACAGAGCTATCTGTACAGTGGCTCTTACC
AGACAATCAAGATCTGGGACATTCGGACCCTTGACTGCATCCATGTCCTGCAGACATCTGGTGGCAGTGTGTATTCCATTGCTGTGACGAATCACCACATTGTCTGTGGCACCTATGAGAACCTCATT
CATGTATGGGACATTGAATCCAAAGAGCAGGTGCGGACCCTAACGGGCCATGTGGGCACAGTATATGCCCTGGCAGTCATTTCAACACCAGACCAGACCAAAGTCTTCAGCGCATCCTATGACCGCTC
CCTCAGGGTCTGGAGCATGGACAACATGATCTGCACACAGACGCTGCTGCGCCATCAGGGCAGTGTAACTGCACTGGCTGTCTCCCGGGGCCGGCTCTTCTCGGGGGCTGTGGATAGCACCGTGAAGG
TTTGGACATGCTAACAGAATCCAGGCCAGGCTTGACTCCTTCTGGGTCTGTAAGTCAGGCTGGACCTCCATGATGGCCTTGGAATGTCCGCCTGTCCTGTGGAGACAGGTAGACAGGCTCAAACAGCT
AGGCAGTGTCCTCTCTGCCTCTGCTCAGTGCGGGGTCTTTCATAAGGCCTCACTCTTACTTCTACCAGAGAAATGCCCAGGCCCTGCTCTGGGCGCCAGGTACGATGCTTGCCCGGCCCCACCATTCA
TATCACTCCATAGACTTTTGTTTTGAGACAGGGTCTCACTATGTAGCTCTGGCTTGCCTGGAACTCACTGTCAACCAGGCTGGCCTCAAACTCACAGATCTGCCTGCCTCCACCTCCCAAGTGCTGGG
AGTAAAGGCATGTGCCACCGCCCCTGGCTGGACCCAGATGGACCATGGGTCCTTTTTACTCACCTTTTCTACTGGTTTTAGACTGTATATAGATTTTATTACTTCCCTGTTGAAATAAAAGCTGCACA
GACTGTG

hide sequence

RefSeq Acc Id:

XM_006245992 ⟹ XP_006246054

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	14,038,129 - 14,048,258 (-)	NCBI
mRatBN7.2	10	13,533,570 - 13,543,706 (-)	NCBI
Rnor_6.0	10	13,874,456 - 13,884,528 (-)	NCBI
Rnor_5.0	10	13,691,429 - 13,710,062 (-)	NCBI

Sequence:

show sequence

CCTTCCTGCCTCAGACAGCAGTGGGGATGGAAACAACCTTTGGGCCTACCTTTTCGACCGTCAC
CACCATTACCAAAGCTGATGGGACCAGCACATACAAACAGCATCGCAGGACGCCTTCCTCCTCTAGCACCCTTGCCTATTCGCCACGGGATGAGGAGGACGGCATGGGCTCAACCCCCTGACAGGCTG
CCTCCATCTGTGCAGCCCCCCATCAACACTCCTCGCCGCTCTGACTCAGCCATCTCTGTCCGCTCCCTGCACTCCGAGTCCAGCATGTCCCTGCGCTCCACGTTCTCGCTGCCTGAGGAGGAAGAGGA
GCCGGAGCCATTGGTGTTTGCGGAGCAGCCCTCGGTGAAGCTGTGCTGCCAGCTCTGCTGCAGTGTGTTCAAGGACCCTGTGATCACTACGTGTGGGCACACCTTCTGCAGACGATGCGCCTTGAAGT
CAGAGAAGTGTCCTGTGGACAATGCCAAGCTGACAGTGGTGGTAAACAACATTGCAGTAGCTGAGCAGATTGGAGAGCTCTTCATACATTGTCGGCATGGCTGCCGTGCAGCAGGCACTGGGAAGCCC
GGTGTCTTTGAGGTAGACCCAAGGGGCTGCCCCTTCACCATCAAGCTTAGTGCCCGGAAGGACCACGAGAGTAGTTGTGACTACAGGCCTGTGCGCTGCCCCAACAACCCCAGCTGCCCACCCCTTCT
CAAGATGAACCTCGAGGCCCACCTGAAAGAATGCGAGCACATCAAGTGTCCCCACTCTAAGTACGGGTGCACATTTATTGGGAATCAGGACACCTATGAGACGCACTTAGAAACATGTCGCTTTGAGG
GCCTGAAGGAATTCCTGCAGCAGACCGATGACCGCTTCCACGAGATGCATGTGGCACTGGCCCAGAAGGACCAGGAGATTGCCTTTCTGCGTTCCATGCTGGGCAAACTCTCAGAGAAGATTGACCAG
CTGGAGAAAAGCCTTGAGCTCAAGTTCGATGTCCTCGATGAGAACCAGAGCAAGCTCAGTGAGGACCTCATGGAATTCCGGAGGGATGCATCCATGTTGAATGATGAGCTGTCTCATATCAATGCACG
CCTGAACATGGGTATCCTGGGATCCTATGATCCTCAGCAGATCTTCAAGTGCAAAGGGACCTTCGTGGGACACCAGGGCCCTGTCTGGTGTCTCTGTGTCTACTCCATGGGTGACCTGCTCTTCAGTG
GCTCTTCTGACAAGACGATCAAGGTGTGGGACACGTGTACCACTTACAAGTGCCAAAAGACACTGGAAGGTCATGACGGTATTGTGCTGGCGCTCTGTATCCAGGGGTGCAAACTGTACAGTGGGTCT
GCAGACTGCACCATCATTGTATGGGACATCCAGAACCTGCAGAAGGTGAACACCATCCGGGCCCATGACAACCCTGTGTGCACACTGGTGTCTTCCCATAACATGCTCTTCAGTGGCTCCCTTAAAGC
CATCAAGGTCTGGGACATCGTGGGCACTGAGCTAAAGTTGAAGAAGGAACTCACAGGCCTCAACCACTGGGTGCGGGCCTTGGTGGCAGCACAGAGCTATCTGTACAGTGGCTCTTACCAGACAATCA
AGATCTGGGACATTCGGACCCTTGACTGCATCCATGTCCTGCAGACATCTGGTGGCAGTGTGTATTCCATTGCTGTGACGAATCACCACATTGTCTGTGGCACCTATGAGAACCTCATTCATGTATGG
GACATTGAATCCAAAGAGCAGGTGCGGACCCTAACGGGCCATGTGGGCACAGTATATGCCCTGGCAGTCATTTCAACACCAGACCAGACCAAAGTCTTCAGCGCATCCTATGACCGCTCCCTCAGGGT
CTGGAGCATGGACAACATGATCTGCACACAGACGCTGCTGCGCCATCAGGGCAGTGTAACTGCACTGGCTGTCTCCCGGGGCCGGCTCTTCTCGGGGGCTGTGGATAGCACCGTGAAGGTTTGGACAT
GCTAACAGAATCCAGGCCAGGCTTGACTCCTTCTGGGTCTGTAAGTCAGGCTGGACCTCCATGATGGCCTTGGAATGTCCGCCTGTCCTGTGGAGACAGGTAGACAGGCTCAAACAGCTAGGCAGTGT
CCTCTCTGCCTCTGCTCAGTGCGGGGTCTTTCATAAGGCCTCACTCTTACTTCTACCAGAGAAATGCCCAGGCCCTGCTCTGGGCGCCAGGTACGATGCTTGCCCGGCCCCACCATTCATATCACTCC
ATAGACTTTTGTTTTGAGACAGGGTCTCACTATGTAGCTCTGGCTTGCCTGGAACTCACTGTCAACCAGGCTGGCCTCAAACTCACAGATCTGCCTGCCTCCACCTCCCAAGTGCTGGGAGTAAAGGC
ATGTGCCACCGCCCCTGGCTGGACCCAGATGGACCATGGGTCCTTTTTACTCACCTTTTCTACTGGTTTTAGACTGTATATAGATTTTATTACTTCCCTGTTGAAATAAAAGCTGCACAGACTGTG

hide sequence

RefSeq Acc Id:

XM_006245993 ⟹ XP_006246055

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	14,038,129 - 14,048,287 (-)	NCBI
mRatBN7.2	10	13,533,570 - 13,543,740 (-)	NCBI
Rnor_6.0	10	13,874,456 - 13,884,504 (-)	NCBI
Rnor_5.0	10	13,691,429 - 13,710,062 (-)	NCBI

Sequence:

show sequence

GGTAAGAGAAGAGCCTGTAGACCAGGATGGAAACAACCTTTGGGCCTACCTTTTCGACCGTCACCACCATTACCAAAGCTGATGGGACCAGCACATACAAACAGCATCGCAGGACGCCTTCCTCCTCT
AGCACCCTTGCCTATTCGCCACGGGATGAGGAGGACGGCATGGGCTCAACCCCCTGACAGGCTGCCTCCATCTGTGCAGCCCCCCATCAACACTCCTCGCCGCTCTGACTCAGCCATCTCTGTCCGCT
CCCTGCACTCCGAGTCCAGCATGTCCCTGCGCTCCACGTTCTCGCTGCCTGAGGAGGAAGAGGAGCCGGAGCCATTGGTGTTTGCGGAGCAGCCCTCGGTGAAGCTGTGCTGCCAGCTCTGCTGCAGT
GTGTTCAAGGACCCTGTGATCACTACGTGTGGGCACACCTTCTGCAGACGATGCGCCTTGAAGTCAGAGAAGTGTCCTGTGGACAATGCCAAGCTGACAGTGGTGGTAAACAACATTGCAGTAGCTGA
GCAGATTGGAGAGCTCTTCATACATTGTCGGCATGGCTGCCGTGCAGCAGGCACTGGGAAGCCCGGTGTCTTTGAGGTAGACCCAAGGGGCTGCCCCTTCACCATCAAGCTTAGTGCCCGGAAGGACC
ACGAGAGTAGTTGTGACTACAGGCCTGTGCGCTGCCCCAACAACCCCAGCTGCCCACCCCTTCTCAAGATGAACCTCGAGGCCCACCTGAAAGAATGCGAGCACATCAAGTGTCCCCACTCTAAGTAC
GGGTGCACATTTATTGGGAATCAGGACACCTATGAGACGCACTTAGAAACATGTCGCTTTGAGGGCCTGAAGGAATTCCTGCAGCAGACCGATGACCGCTTCCACGAGATGCATGTGGCACTGGCCCA
GAAGGACCAGGAGATTGCCTTTCTGCGTTCCATGCTGGGCAAACTCTCAGAGAAGATTGACCAGCTGGAGAAAAGCCTTGAGCTCAAGTTCGATGTCCTCGATGAGAACCAGAGCAAGCTCAGTGAGG
ACCTCATGGAATTCCGGAGGGATGCATCCATGTTGAATGATGAGCTGTCTCATATCAATGCACGCCTGAACATGGGTATCCTGGGATCCTATGATCCTCAGCAGATCTTCAAGTGCAAAGGGACCTTC
GTGGGACACCAGGGCCCTGTCTGGTGTCTCTGTGTCTACTCCATGGGTGACCTGCTCTTCAGTGGCTCTTCTGACAAGACGATCAAGGTGTGGGACACGTGTACCACTTACAAGTGCCAAAAGACACT
GGAAGGTCATGACGGTATTGTGCTGGCGCTCTGTATCCAGGGGTGCAAACTGTACAGTGGGTCTGCAGACTGCACCATCATTGTATGGGACATCCAGAACCTGCAGAAGGTGAACACCATCCGGGCCC
ATGACAACCCTGTGTGCACACTGGTGTCTTCCCATAACATGCTCTTCAGTGGCTCCCTTAAAGCCATCAAGGTCTGGGACATCGTGGGCACTGAGCTAAAGTTGAAGAAGGAACTCACAGGCCTCAAC
CACTGGGTGCGGGCCTTGGTGGCAGCACAGAGCTATCTGTACAGTGGCTCTTACCAGACAATCAAGATCTGGGACATTCGGACCCTTGACTGCATCCATGTCCTGCAGACATCTGGTGGCAGTGTGTA
TTCCATTGCTGTGACGAATCACCACATTGTCTGTGGCACCTATGAGAACCTCATTCATGTATGGGACATTGAATCCAAAGAGCAGGTGCGGACCCTAACGGGCCATGTGGGCACAGTATATGCCCTGG
CAGTCATTTCAACACCAGACCAGACCAAAGTCTTCAGCGCATCCTATGACCGCTCCCTCAGGGTCTGGAGCATGGACAACATGATCTGCACACAGACGCTGCTGCGCCATCAGGGCAGTGTAACTGCA
CTGGCTGTCTCCCGGGGCCGGCTCTTCTCGGGGGCTGTGGATAGCACCGTGAAGGTTTGGACATGCTAACAGAATCCAGGCCAGGCTTGACTCCTTCTGGGTCTGTAAGTCAGGCTGGACCTCCATGA
TGGCCTTGGAATGTCCGCCTGTCCTGTGGAGACAGGTAGACAGGCTCAAACAGCTAGGCAGTGTCCTCTCTGCCTCTGCTCAGTGCGGGGTCTTTCATAAGGCCTCACTCTTACTTCTACCAGAGAAA
TGCCCAGGCCCTGCTCTGGGCGCCAGGTACGATGCTTGCCCGGCCCCACCATTCATATCACTCCATAGACTTTTGTTTTGAGACAGGGTCTCACTATGTAGCTCTGGCTTGCCTGGAACTCACTGTCA
ACCAGGCTGGCCTCAAACTCACAGATCTGCCTGCCTCCACCTCCCAAGTGCTGGGAGTAAAGGCATGTGCCACCGCCCCTGGCTGGACCCAGATGGACCATGGGTCCTTTTTACTCACCTTTTCTACT
GGTTTTAGACTGTATATAGATTTTATTACTTCCCTGTTGAAATAAAAGCTGCACAGACTGTG

hide sequence

RefSeq Acc Id:

XM_017597366 ⟹ XP_017452855

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	14,038,129 - 14,056,760 (-)	NCBI
mRatBN7.2	10	13,533,570 - 13,552,223 (-)	NCBI
Rnor_6.0	10	13,874,456 - 13,893,088 (-)	NCBI

Sequence:

show sequence

TAGAGTTCCTGAAGTCGGTGAACTACAAGTTCCGACGTGCACAGTGCCCGGGGACTTCCGGCTC
CTGTATCCTGTACCTTTCCCGGCCCCGGGCCGAGAGGGGCAAGATGATGCCGGAGGGTGTAGCCGCTGCTCCCAGGCAGCTGCGGGCGGGGGACACTGCCCAAGGACCCTGGATGCCTCTCTAGAGCA
TGAGCTCAGCCAAGAGTGCCCGCTACAACCGCTTCTCCGGGGGGCCTGCCAACCTTCCTGCCTCAGACAGCAGTGGGCAGCTGATGGGACCAGCACATACAAACAGCATCGCAGGACGCCTTCCTCCT
CTAGCACCCTTGCCTATTCGCCACGGGATGAGGAGGACGGCATGGGCTCAACCCCCTGACAGGCTGCCTCCATCTGTGCAGCCCCCCATCAACACTCCTCGCCGCTCTGACTCAGCCATCTCTGTCCG
CTCCCTGCACTCCGAGTCCAGCATGTCCCTGCGCTCCACGTTCTCGCTGCCTGAGGAGGAAGAGGAGCCGGAGCCATTGGTGTTTGCGGAGCAGCCCTCGGTGAAGCTGTGCTGCCAGCTCTGCTGCA
GTGTGTTCAAGGACCCTGTGATCACTACGTGTGGGCACACCTTCTGCAGACGATGCGCCTTGAAGTCAGAGAAGTGTCCTGTGGACAATGCCAAGCTGACAGTGGTGGTAAACAACATTGCAGTAGCT
GAGCAGATTGGAGAGCTCTTCATACATTGTCGGCATGGCTGCCGTGCAGCAGGCACTGGGAAGCCCGGTGTCTTTGAGGTAGACCCAAGGGGCTGCCCCTTCACCATCAAGCTTAGTGCCCGGAAGGA
CCACGAGAGTAGTTGTGACTACAGGCCTGTGCGCTGCCCCAACAACCCCAGCTGCCCACCCCTTCTCAAGATGAACCTCGAGGCCCACCTGAAAGAATGCGAGCACATCAAGTGTCCCCACTCTAAGT
ACGGGTGCACATTTATTGGGAATCAGGACACCTATGAGACGCACTTAGAAACATGTCGCTTTGAGGGCCTGAAGGAATTCCTGCAGCAGACCGATGACCGCTTCCACGAGATGCATGTGGCACTGGCC
CAGAAGGACCAGGAGATTGCCTTTCTGCGTTCCATGCTGGGCAAACTCTCAGAGAAGATTGACCAGCTGGAGAAAAGCCTTGAGCTCAAGTTCGATGTCCTCGATGAGAACCAGAGCAAGCTCAGTGA
GGACCTCATGGAATTCCGGAGGGATGCATCCATGTTGAATGATGAGCTGTCTCATATCAATGCACGCCTGAACATGGGTATCCTGGGATCCTATGATCCTCAGCAGATCTTCAAGTGCAAAGGGACCT
TCGTGGGACACCAGGGCCCTGTCTGGTGTCTCTGTGTCTACTCCATGGGTGACCTGCTCTTCAGTGGCTCTTCTGACAAGACGATCAAGGTGTGGGACACGTGTACCACTTACAAGTGCCAAAAGACA
CTGGAAGGTCATGACGGTATTGTGCTGGCGCTCTGTATCCAGGGGTGCAAACTGTACAGTGGGTCTGCAGACTGCACCATCATTGTATGGGACATCCAGAACCTGCAGAAGGTGAACACCATCCGGGC
CCATGACAACCCTGTGTGCACACTGGTGTCTTCCCATAACATGCTCTTCAGTGGCTCCCTTAAAGCCATCAAGGTCTGGGACATCGTGGGCACTGAGCTAAAGTTGAAGAAGGAACTCACAGGCCTCA
ACCACTGGGTGCGGGCCTTGGTGGCAGCACAGAGCTATCTGTACAGTGGCTCTTACCAGACAATCAAGATCTGGGACATTCGGACCCTTGACTGCATCCATGTCCTGCAGACATCTGGTGGCAGTGTG
TATTCCATTGCTGTGACGAATCACCACATTGTCTGTGGCACCTATGAGAACCTCATTCATGTATGGGACATTGAATCCAAAGAGCAGGTGCGGACCCTAACGGGCCATGTGGGCACAGTATATGCCCT
GGCAGTCATTTCAACACCAGACCAGACCAAAGTCTTCAGCGCATCCTATGACCGCTCCCTCAGGGTCTGGAGCATGGACAACATGATCTGCACACAGACGCTGCTGCGCCATCAGGGCAGTGTAACTG
CACTGGCTGTCTCCCGGGGCCGGCTCTTCTCGGGGGCTGTGGATAGCACCGTGAAGGTTTGGACATGCTAACAGAATCCAGGCCAGGCTTGACTCCTTCTGGGTCTGTAAGTCAGGCTGGACCTCCAT
GATGGCCTTGGAATGTCCGCCTGTCCTGTGGAGACAGGTAGACAGGCTCAAACAGCTAGGCAGTGTCCTCTCTGCCTCTGCTCAGTGCGGGGTCTTTCATAAGGCCTCACTCTTACTTCTACCAGAGA
AATGCCCAGGCCCTGCTCTGGGCGCCAGGTACGATGCTTGCCCGGCCCCACCATTCATATCACTCCATAGACTTTTGTTTTGAGACAGGGTCTCACTATGTAGCTCTGGCTTGCCTGGAACTCACTGT
CAACCAGGCTGGCCTCAAACTCACAGATCTGCCTGCCTCCACCTCCCAAGTGCTGGGAGTAAAGGCATGTGCCACCGCCCCTGGCTGGACCCAGATGGACCATGGGTCCTTTTTACTCACCTTTTCTA
CTGGTTTTAGACTGTATATAGATTTTATTACTTCCCTGTTGAAATAAAAGCTGCACAGACTGTG

hide sequence

RefSeq Acc Id:

XM_039086269 ⟹ XP_038942197

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	14,038,129 - 14,056,760 (-)	NCBI
mRatBN7.2	10	13,533,570 - 13,552,223 (-)	NCBI

RefSeq Acc Id:

XM_039086271 ⟹ XP_038942199

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	14,038,129 - 14,056,795 (-)	NCBI
mRatBN7.2	10	13,533,570 - 13,552,290 (-)	NCBI

RefSeq Acc Id:

XM_063269306 ⟹ XP_063125376

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	14,038,129 - 14,048,292 (-)	NCBI

RefSeq Acc Id:

XM_063269307 ⟹ XP_063125377

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	14,038,129 - 14,048,292 (-)	NCBI

RefSeq Acc Id:

XM_063269308 ⟹ XP_063125378

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	14,038,129 - 14,056,732 (-)	NCBI

RefSeq Acc Id:

XM_063269309 ⟹ XP_063125379

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	14,038,129 - 14,056,832 (-)	NCBI


Protein RefSeqs	NP_001121020	(Get FASTA)	NCBI Sequence Viewer
	NP_001402082	(Get FASTA)	NCBI Sequence Viewer
	XP_006246045	(Get FASTA)	NCBI Sequence Viewer
	XP_006246047	(Get FASTA)	NCBI Sequence Viewer
	XP_006246049	(Get FASTA)	NCBI Sequence Viewer
	XP_006246053	(Get FASTA)	NCBI Sequence Viewer
	XP_006246054	(Get FASTA)	NCBI Sequence Viewer
	XP_006246055	(Get FASTA)	NCBI Sequence Viewer
	XP_017452855	(Get FASTA)	NCBI Sequence Viewer
	XP_038942197	(Get FASTA)	NCBI Sequence Viewer
	XP_038942199	(Get FASTA)	NCBI Sequence Viewer
	XP_063125376	(Get FASTA)	NCBI Sequence Viewer
	XP_063125377	(Get FASTA)	NCBI Sequence Viewer
	XP_063125378	(Get FASTA)	NCBI Sequence Viewer
	XP_063125379	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI61916	(Get FASTA)	NCBI Sequence Viewer
	EDM03842	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000004192.4
	ENSRNOP00000081332.1
	ENSRNOP00000082217
	ENSRNOP00000082217.1
	ENSRNOP00000089242.1
	ENSRNOP00000094607
	ENSRNOP00000094607.1

RefSeq Acc Id:	NP_001121020 ⟸ NM_001127548
- Peptide Label:	isoform 2
- UniProtKB:	B1WBW7 (UniProtKB/TrEMBL), F7FIY6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSAKSARYNRFSGGPANLPASDSSGTRMETTFGPTFSTVTTITKADGTSTYKQHRRTPSSSSTLAYSPRDEEDGMPPINTPRRSDSAISVRSLHSESSMSLRSTFSLPEEEEEPEPLVFAEQPSVKL CCQLCCSVFKDPVITTCGHTFCRRCALKSEKCPVDNAKLTVVVNNIAVAEQIGELFIHCRHGCRAAGTGKPGVFEVDPRGCPFTIKLSARKDHESSCDYRPVRCPNNPSCPPLLKMNLEAHLKECEHI KCPHSKYGCTFIGNQDTYETHLETCRFEGLKEFLQQTDDRFHEMHVALAQKDQEIAFLRSMLGKLSEKIDQLEKSLELKFDVLDENQSKLSEDLMEFRRDASMLNDELSHINARLNMGILGSYDPQQI FKCKGTFVGHQGPVWCLCVYSMGDLLFSGSSDKTIKVWDTCTTYKCQKTLEGHDGIVLALCIQGCKLYSGSADCTIIVWDIQNLQKVNTIRAHDNPVCTLVSSHNMLFSGSLKAIKVWDIVGTELKLK KELTGLNHWVRALVAAQSYLYSGSYQTIKIWDIRTLDCIHVLQTSGGSVYSIAVTNHHIVCGTYENLIHVWDIESKEQVRTLTGHVGTVYALAVISTPDQTKVFSASYDRSLRVWSMDNMICTQTLLR HQGSVTALAVSRGRLFSGAVDSTVKVWTC hide sequence

RefSeq Acc Id:	XP_006246045 ⟸ XM_006245983
- Peptide Label:	isoform X1
- UniProtKB:	F7FIY6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSAKSARYNRFSGGPANLPASDSSGTRMETTFGPTFSTVTTITKAADGTSTYKQHRRTPSSSS TLAYSPRDEEDGMPPINTPRRSDSAISVRSLHSESSMSLRSTFSLPEEEEEPEPLVFAEQPSVKLCCQLCCSVFKDPVITTCGHTFCRRCALKSEKCPVDNAKLTVVVNNIAVAEQIGELFIHCRHGC RAAGTGKPGVFEVDPRGCPFTIKLSARKDHESSCDYRPVRCPNNPSCPPLLKMNLEAHLKECEHIKCPHSKCTFIGNQDTYETHLETCRFEGLKEFLQQTDDRFHEMHVALAQKDQEIAFLRSMLGKL SEKIDQLEKSLELKFDVLDENQSKLSEDLMEFRRDASMLNDELSHINARLNMGILGSYDPQQIFKCKGTFVGHQGPVWCLCVYSMGDLLFSGSSDKTIKVWDTCTTYKCQKTLEGHDGIVLALCIQGC KLYSGSADCTIIVWDIQNLQKVNTIRAHDNPVCTLVSSHNMLFSGSLKAIKVWDIVGTELKLKKELTGLNHWVRALVAAQSYLYSGSYQTIKIWDIRTLDCIHVLQTSGGSVYSIAVTNHHIVCGTYE NLIHVWDIESKEQVRTLTGHVGTVYALAVISTPDQTKVFSASYDRSLRVWSMDNMICTQTLLRHQGSVTALAVSRGRLFSGAVDSTVKVWTC hide sequence

RefSeq Acc Id:	XP_006246054 ⟸ XM_006245992
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I6AMJ5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGPAHTNSIAGRLPPLAPLPIRHGMRRTAWAQPPDRLPPSVQPPINTPRRSDSAISVRSLHSESSMSLRSTFSLPEEEEEPEPLVFAEQPSVKLCCQLCCSVFKDPVITTCGHTFCRRCALKSEKCPV DNAKLTVVVNNIAVAEQIGELFIHCRHGCRAAGTGKPGVFEVDPRGCPFTIKLSARKDHESSCDYRPVRCPNNPSCPPLLKMNLEAHLKECEHIKCPHSKYGCTFIGNQDTYETHLETCRFEGLKEFL QQTDDRFHEMHVALAQKDQEIAFLRSMLGKLSEKIDQLEKSLELKFDVLDENQSKLSEDLMEFRRDASMLNDELSHINARLNMGILGSYDPQQIFKCKGTFVGHQGPVWCLCVYSMGDLLFSGSSDKT IKVWDTCTTYKCQKTLEGHDGIVLALCIQGCKLYSGSADCTIIVWDIQNLQKVNTIRAHDNPVCTLVSSHNMLFSGSLKAIKVWDIVGTELKLKKELTGLNHWVRALVAAQSYLYSGSYQTIKIWDIR TLDCIHVLQTSGGSVYSIAVTNHHIVCGTYENLIHVWDIESKEQVRTLTGHVGTVYALAVISTPDQTKVFSASYDRSLRVWSMDNMICTQTLLRHQGSVTALAVSRGRLFSGAVDSTVKVWTC hide sequence

RefSeq Acc Id:	XP_006246047 ⟸ XM_006245985
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6A9T1 (UniProtKB/TrEMBL)
- Sequence:	show sequence METTFGPTFSTVTTITKAADGTSTYKQHRRTPSSSSTLAYSPRDEEDGMPPINTPRRSDSAISVRSLHSESSMSLRSTFSLPEEEEEPEPLVFAEQPSVKLCCQLCCSVFKDPVITTCGHTFCRRCAL KSEKCPVDNAKLTVVVNNIAVAEQIGELFIHCRHGCRAAGTGKPGVFEVDPRGCPFTIKLSARKDHESSCDYRPVRCPNNPSCPPLLKMNLEAHLKECEHIKCPHSKYGCTFIGNQDTYETHLETCRF EGLKEFLQQTDDRFHEMHVALAQKDQEIAFLRSMLGKLSEKIDQLEKSLELKFDVLDENQSKLSEDLMEFRRDASMLNDELSHINARLNMGILGSYDPQQIFKCKGTFVGHQGPVWCLCVYSMGDLLF SGSSDKTIKVWDTCTTYKCQKTLEGHDGIVLALCIQGCKLYSGSADCTIIVWDIQNLQKVNTIRAHDNPVCTLVSSHNMLFSGSLKAIKVWDIVGTELKLKKELTGLNHWVRALVAAQSYLYSGSYQT IKIWDIRTLDCIHVLQTSGGSVYSIAVTNHHIVCGTYENLIHVWDIESKEQVRTLTGHVGTVYALAVISTPDQTKVFSASYDRSLRVWSMDNMICTQTLLRHQGSVTALAVSRGRLFSGAVDSTVKVW TC hide sequence

RefSeq Acc Id:	XP_006246049 ⟸ XM_006245987
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I6A9T1 (UniProtKB/TrEMBL)
- Sequence:	show sequence METTFGPTFSTVTTITKADGTSTYKQHRRTPSSSSTLAYSPRDEEDGMPPINTPRRSDSAISVR SLHSESSMSLRSTFSLPEEEEEPEPLVFAEQPSVKLCCQLCCSVFKDPVITTCGHTFCRRCALKSEKCPVDNAKLTVVVNNIAVAEQIGELFIHCRHGCRAAGTGKPGVFEVDPRGCPFTIKLSARKD HESSCDYRPVRCPNNPSCPPLLKMNLEAHLKECEHIKCPHSKYGCTFIGNQDTYETHLETCRFEGLKEFLQQTDDRFHEMHVALAQKDQEIAFLRSMLGKLSEKIDQLEKSLELKFDVLDENQSKLSE DLMEFRRDASMLNDELSHINARLNMGILGSYDPQQIFKCKGTFVGHQGPVWCLCVYSMGDLLFSGSSDKTIKVWDTCTTYKCQKTLEGHDGIVLALCIQGCKLYSGSADCTIIVWDIQNLQKVNTIRA HDNPVCTLVSSHNMLFSGSLKAIKVWDIVGTELKLKKELTGLNHWVRALVAAQSYLYSGSYQTIKIWDIRTLDCIHVLQTSGGSVYSIAVTNHHIVCGTYENLIHVWDIESKEQVRTLTGHVGTVYAL AVISTPDQTKVFSASYDRSLRVWSMDNMICTQTLLRHQGSVTALAVSRGRLFSGAVDSTVKVWTC hide sequence

Protein Domains

RING-type TRAF-type

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B1WBW7-F1-model_v2	AlphaFold	B1WBW7	1-669	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13697014

Promoter ID:

EPDNEW_R7539

Type:

initiation region

Name:

Traf7_1

Description:

TNF receptor associated factor 7

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	13,893,020 - 13,893,080	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-25853	BioCyc
Ensembl Genes	ENSRNOG00000003131	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000004192.5	UniProtKB/TrEMBL
	ENSRNOT00000097263	ENTREZGENE
	ENSRNOT00000097263.1	UniProtKB/TrEMBL
	ENSRNOT00000100967.1	UniProtKB/TrEMBL
	ENSRNOT00000107920.1	UniProtKB/TrEMBL
	ENSRNOT00000115734	ENTREZGENE
	ENSRNOT00000115734.1	UniProtKB/TrEMBL
Gene3D-CATH	2.130.10.10	UniProtKB/TrEMBL
	3.30.40.10	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:8369808	IMAGE-MGC_LOAD
InterPro	G-protein_beta_WD-40_rep_reg	UniProtKB/TrEMBL
	WD40/YVTN_repeat-like_dom	UniProtKB/TrEMBL
	WD40_repeat	UniProtKB/TrEMBL
	WD40_repeat_CS	UniProtKB/TrEMBL
	WD40_repeat_dom_sf	UniProtKB/TrEMBL
	Znf-RING_LisH	UniProtKB/TrEMBL
	Znf_RING	UniProtKB/TrEMBL
	Znf_RING/FYVE/PHD	UniProtKB/TrEMBL
	Znf_RING_CS	UniProtKB/TrEMBL
	Znf_TRAF	UniProtKB/TrEMBL
KEGG Report	rno:360491	UniProtKB/TrEMBL
MGC_CLONE	MGC:187654	IMAGE-MGC_LOAD
NCBI Gene	360491	ENTREZGENE
PANTHER	E3 UBIQUITIN-PROTEIN LIGASE TRAF7	UniProtKB/TrEMBL
	WD40 REPEAT PROTEIN	UniProtKB/TrEMBL
Pfam	WD40	UniProtKB/TrEMBL
	zf-RING_UBOX	UniProtKB/TrEMBL
PhenoGen	Traf7	PhenoGen
PRINTS	GPROTEINBRPT	UniProtKB/TrEMBL
PROSITE	WD_REPEATS_1	UniProtKB/TrEMBL
	WD_REPEATS_2	UniProtKB/TrEMBL
	WD_REPEATS_REGION	UniProtKB/TrEMBL
	ZF_RING_1	UniProtKB/TrEMBL
	ZF_RING_2	UniProtKB/TrEMBL
	ZF_TRAF	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000003131	RatGTEx
SMART	RING	UniProtKB/TrEMBL
	WD40	UniProtKB/TrEMBL
Superfamily-SCOP	RING/U-box	UniProtKB/TrEMBL
	TRAF domain-like	UniProtKB/TrEMBL
	WD40_like	UniProtKB/TrEMBL
UniProt	A0A8I5ZSA7_RAT	UniProtKB/TrEMBL
	A0A8I5ZTK4_RAT	UniProtKB/TrEMBL
	A0A8I6A9T1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AMJ5	ENTREZGENE, UniProtKB/TrEMBL
	B1WBW7	ENTREZGENE, UniProtKB/TrEMBL
	F7FIY6	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-11-25	Traf7	TNF receptor associated factor 7	Traf7	TNF receptor-associated factor 7, E3 ubiquitin protein ligase	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-10-16	Traf7	TNF receptor-associated factor 7, E3 ubiquitin protein ligase	Traf7	Tnf receptor-associated factor 7	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Traf7	Tnf receptor-associated factor 7	Traf7_predicted	Tnf receptor-associated factor 7 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Traf7_predicted	Tnf receptor-associated factor 7 (predicted)	RGD1559653_predicted	similar to ring finger and WD repeat domain 1 isoform 1 (predicted)	Symbol and Name updated	1299863	APPROVED
2006-03-07	RGD1559653_predicted	similar to ring finger and WD repeat domain 1 isoform 1 (predicted)	LOC360491	similar to ring finger and WD repeat domain 1 isoform 1	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC360491	similar to ring finger and WD repeat domain 1 isoform 1			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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