Kidm50 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Kidm50 (Kidney mass QTL 50) Rattus norvegicus

Symbol: Kidm50
Name: Kidney mass QTL 50
RGD ID: 10401803
Previously known as: kidney_weight 10
Trait: kidney mass   (VT:0002707)    
Measurement Type: both kidneys wet weight   (CMO:0000085)    
LOD Score: Not Available
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr810922,197 - 45,922,197RGD_MAPPER_PIPELINE
mRatBN7.210418,344 - 45,418,344RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0101 - 44,902,893RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0101 - 44,766,832RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.410928,203 - 45,928,203RGD_MAPPER_PIPELINERGSC3.4
Cross Type: intercross
Strains Crossed: ISIAH WAG/Nov 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Gm2a is a candidate Gene for Kidm50
Wwc1 is a candidate Gene for Kidm50


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Kidm50RatStress-Induced Hypertension  IDA 10045846 RGD 

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Kidm50Ratdecreased kidney weight  IDA 10045846 RGD 

Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Kidm50Ratboth kidneys wet weight  IDA 10045846 RGD 

Experimental Condition
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Kidm50Ratcontrol condition  IDA 10045846 RGD 

Measurement Method
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Kidm50Ratpost excision weight measurement  IDA 10045846 RGD 

Rat Strain
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Kidm50RatISIAH  IEA 10045846 RGD 
Kidm50RatWAG/Nov  IEA 10045846 RGD 

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Kidm50Ratkidney mass  IDA 10045846 RGD 


#
Reference Title
Reference Citation
1. Candidate genes in quantitative trait loci associated with absolute and relative kidney weight in rats with Inherited Stress Induced Arterial Hypertension. Redina OE, etal., BMC Genet. 2015;16 Suppl 1:S1. doi: 10.1186/1471-2156-16-S1-S1. Epub 2015 Feb 2.


1 to 20 of 942 rows
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
41257235LOC120095004uncharacterized LOC12009500410418304470170Rat
41238743Txnl4a-ps14thioredoxin-like 4A, pseudogene 1410419449419656Rat
3112Abcc1ATP binding cassette subfamily C member 110528961655179Rat
1583746Aurka-ps1aurora kinase A, pseudogene 110529156530420Rat
1587094Rps3a-ps8ribosomal protein S3a, pseudogene 810624394625249Rat
1305823Cep20centrosomal protein 2010714051736826Rat
3136Myh11myosin heavy chain 1110743364838459Rat
620038Nde1nudE neurodevelopment protein 110839788883946Rat
2325341Mir484microRNA 48410887684887760Rat
619770Marf1meiosis regulator and mRNA stability factor 110888053932760Rat
1304845Ercc4l1excision repair cross-complementing rodent repair deficiency, complementation group 4-like 110954927983651Rat
1560833Mrtfbmyocardin related transcription factor B1011163151278106Rat
11510655Trnat-cgu2transfer RNA threonine (anticodon CGU) 21013070941307165Rat
7574419LOC102547286uncharacterized LOC1025472861013161081354300Rat
9685090Mir193bmicroRNA 193b1013177421317824Rat
41398555LOC120095007uncharacterized LOC1200950071013467891362336Rat
1565449Parnpoly(A)-specific ribonuclease1014106361548573Rat
1583666Dynll1ldynein light chain LC8-type 1 like1014927881493464Rat
1304791Bfarbifunctional apoptosis regulator1015520191585040Rat
61935Pla2g10phospholipase A2, group X1015977611610822Rat

1 to 20 of 942 rows
1 to 20 of 1056 rows
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Expected Size
Chr
Start
Stop
Species
Match
10792D10Wox10850103840624038407090Ratregion
10794D10Mgh9130103777589037776020Ratregion
10795D10Wox9188103777583737776025Ratregion
10874D10Rat83173104539382945394002Ratregion
33909D10Mit4188103539226735392457Ratregion
34053D10Mit3148104003509440035242Ratregion
34084D10Mgh18206101792601517926223Ratregion
34359D10Mgh11134102929950429299638Ratregion
34361D10Mgh251411051440275144168Ratregion
34677D10Mgh19108103063149230631600Ratregion
33565D10Mit9238103122402631224268Ratregion
33585D10Mit6190101448701114487201Ratregion
33591D10Mit141001053870145387112Ratregion
33600D10Mit151851048263974826582Ratregion
33630D10Mit17163101272586612726029Ratregion
33632D10Mit10198102652195726522155Ratregion
33666D10Mit1691101960648319606574Ratregion
35571D10Rat35147103167468831674835Ratregion
35983D10Rat891171031521093152242Ratregion
36067D10Rat38174103096480030964974Ratregion
1 to 20 of 1056 rows

Peak: (D10Rat43)
Rat AssemblyChrPosition (strand)Source
GRCr81023,422,121 - 23,422,274 (+)Marker Load Pipeline
mRatBN7.21022,918,268 - 22,918,421 (-)MAPPER
Rnor_6.01022,402,817 - 22,402,969NCBI
Rnor_5.01022,266,756 - 22,266,908UniSTS
RGSC_v3.41023,428,127 - 23,428,280RGD
RGSC_v3.41023,428,128 - 23,428,280UniSTS
RGSC_v3.11023,429,177 - 23,429,329RGD
Celera1022,529,796 - 22,529,945UniSTS
RH 3.4 Map10236.6UniSTS
RH 3.4 Map10236.6RGD
RH 2.0 Map10256.7RGD
SHRSP x BN Map1027.2699RGD
FHH x ACI Map1016.48RGD
Cytogenetic Map10 RGD


1 to 10 of 84 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
61441Btemp1Thermal response to stress QTL 14body temperature trait (VT:0005535)core body temperature (CMO:0001036)103539245763642539Rat
9589136Insul27Insulin level QTL 2710.460.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)101147401056474010Rat
152025229Scl83Serum cholesterol level QTL 834.33blood cholesterol amount (VT:0000180)103571058068663659Rat
1578779Tcas10Tongue tumor susceptibility QTL 103.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)103129743976297439Rat
631564Apr3Acute phase response QTL 33.9blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)101527595560275955Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
631552Vetf2Vascular elastic tissue fragility QTL 24.50.0002aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)104114263386142633Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
631557Bp136Blood pressure QTL 1360.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)103063205375632053Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat

1 to 10 of 84 rows


Note Type Note Reference
qtl_general measurement method: animals were maintained under normal conditions, both kidneys were removed and weighed 10045846
qtl_general number of animals used: 126, 6 months old F2 males 10045846
qtl_general software package used: MAPMAKER/EXP 3.0, MAPMAKER/QTL 1.1 10045846
qtl_general confidence interval: 204-242 Mb