Hint1 (histidine triad nucleotide binding protein 1) - Rat Genome Database

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Gene: Hint1 (histidine triad nucleotide binding protein 1) Rattus norvegicus
Analyze
Symbol: Hint1 (Ensembl: AABR07060778.1)
Name: histidine triad nucleotide binding protein 1 (Ensembl:histidine triad nucleotide binding protein 1, pseudo 1)
RGD ID: 1593411
Description: Predicted to enable adenosine 5'-monophosphoramidase activity and deSUMOylase activity. Predicted to be involved in several processes, including intrinsic apoptotic signaling pathway by p53 class mediator; positive regulation of calcium-mediated signaling; and protein desumoylation. Predicted to be located in cytosol; nucleoplasm; and plasma membrane. Predicted to be part of histone deacetylase complex. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in Gamstorp-Wohlfart syndrome. Orthologous to human HINT1 (histidine triad nucleotide binding protein 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; amitrole.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 17 kDa inhibitor of protein kinase C; adenosine 5'-monophosphoramidase; adenosine 5'-monophosphoramidase HINT1; desumoylating isopeptidase HINT1; histidine triad nucleotide-binding protein 1; LOC690660; Pkci; PKCI-1; Prkci; protein kinase C inhibitor 1; protein kinase C, iota; protein kinase C-interacting protein 1; similar to Histidine triad nucleotide-binding protein 1 (Adenosine 5-monophosphoramidase) (Protein kinase C inhibitor 1) (Protein kinase C-interacting protein 1) (PKCI-1)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Hint1-ps1  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81039,490,225 - 39,493,970 (+)NCBIGRCr8
mRatBN7.21038,989,516 - 38,993,259 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl492,100,973 - 92,101,568 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1043,678,169 - 43,681,916 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01043,168,260 - 43,172,007 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01038,671,971 - 38,675,718 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01040,208,236 - 40,211,981 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1040,208,223 - 40,211,975 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01039,980,504 - 39,984,249 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41040,271,895 - 40,275,640 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1038,327,662 - 38,331,407 (+)NCBICelera
Cytogenetic Map10q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
(1->4)-beta-D-glucan  (ISO)
(S)-nicotine  (ISO)
1,2-dimethylhydrazine  (ISO)
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine  (ISO)
17alpha-ethynylestradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
4,4'-diaminodiphenylmethane  (ISO)
4-hydroxynon-2-enal  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
amphetamine  (ISO)
aniline  (ISO)
arsenite(3-)  (ISO)
atrazine  (ISO)
benzene  (ISO)
benzo[a]pyrene  (EXP,ISO)
bisphenol A  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
CGP 52608  (ISO)
chloropicrin  (ISO)
decabromodiphenyl ether  (EXP)
deoxynivalenol  (ISO)
diethylstilbestrol  (ISO)
disodium selenite  (ISO)
doxorubicin  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
fenthion  (ISO)
folic acid  (ISO)
hydralazine  (ISO)
hydrogen peroxide  (ISO)
ivermectin  (ISO)
lovastatin  (ISO)
Mecamylamine  (ISO)
methimazole  (EXP)
morphine  (ISO)
nicotine  (ISO)
ozone  (ISO)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
pyrogallol  (ISO)
rotenone  (ISO)
sarin  (EXP)
SB 431542  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (ISO)
sulfadimethoxine  (EXP)
sulfasalazine  (ISO)
sulindac sulfone  (ISO)
tamoxifen  (ISO)
tanespimycin  (ISO)
tetrachloromethane  (ISO)
theophylline  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vincristine  (ISO)
warfarin  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,ISO,ISS)
cytosol  (ISO)
histone deacetylase complex  (ISO,ISS)
nucleoplasm  (ISO)
nucleus  (IBA,ISO,ISS)
plasma membrane  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9770345   PMID:12477932   PMID:16835243   PMID:19056867   PMID:20458337   PMID:23376485   PMID:23576580   PMID:32357304  


Genomics

Comparative Map Data
Hint1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81039,490,225 - 39,493,970 (+)NCBIGRCr8
mRatBN7.21038,989,516 - 38,993,259 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl492,100,973 - 92,101,568 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1043,678,169 - 43,681,916 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01043,168,260 - 43,172,007 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01038,671,971 - 38,675,718 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01040,208,236 - 40,211,981 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1040,208,223 - 40,211,975 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01039,980,504 - 39,984,249 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41040,271,895 - 40,275,640 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1038,327,662 - 38,331,407 (+)NCBICelera
Cytogenetic Map10q22NCBI
HINT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385131,159,027 - 131,165,256 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5131,155,383 - 131,224,468 (-)EnsemblGRCh38hg38GRCh38
GRCh375130,494,720 - 130,500,949 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365130,522,776 - 130,528,935 (-)NCBINCBI36Build 36hg18NCBI36
Celera5126,625,253 - 126,631,412 (-)NCBICelera
Cytogenetic Map5q23.3NCBI
HuRef5125,686,002 - 125,692,067 (-)NCBIHuRef
CHM1_15129,927,969 - 129,934,034 (-)NCBICHM1_1
T2T-CHM13v2.05131,678,018 - 131,684,247 (-)NCBIT2T-CHM13v2.0
Hint1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391154,757,209 - 54,761,332 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1154,757,209 - 54,761,327 (+)EnsemblGRCm39 Ensembl
GRCm381154,866,383 - 54,870,506 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1154,866,383 - 54,870,501 (+)EnsemblGRCm38mm10GRCm38
MGSCv371154,679,940 - 54,683,998 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361154,709,861 - 54,713,919 (+)NCBIMGSCv36mm8
Celera1159,453,774 - 59,457,833 (+)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1132.13NCBI
Hint1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554082,674,109 - 2,678,528 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554082,673,950 - 2,678,528 (-)NCBIChiLan1.0ChiLan1.0
HINT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24126,483,128 - 126,489,392 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15124,622,692 - 124,628,778 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05126,587,934 - 126,594,032 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15132,755,766 - 132,761,823 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5132,755,766 - 132,761,823 (-)Ensemblpanpan1.1panPan2
HINT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11119,551,057 - 19,555,390 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1118,349,051 - 18,353,388 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01120,329,881 - 20,334,193 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1120,329,885 - 20,334,199 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11119,058,222 - 19,062,564 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01118,904,366 - 18,908,698 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01119,503,840 - 19,508,157 (-)NCBIUU_Cfam_GSD_1.0
Hint1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213116,840,774 - 116,846,653 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366473,843,544 - 3,849,428 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HINT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2133,467,151 - 133,475,454 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12133,469,765 - 133,475,813 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22138,701,204 - 138,705,746 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HINT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12334,019,009 - 34,025,006 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2334,014,501 - 34,025,323 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603443,941,290 - 43,947,437 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hint1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473340,896,588 - 40,902,828 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473340,896,566 - 40,902,835 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Hint1
17 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:9
Count of miRNA genes:9
Interacting mature miRNAs:9
Transcripts:ENSRNOT00000000772
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142315980Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10538701450387014Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10538701450387014Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10538701450387014Rat
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)10580199062146030Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10637574651375746Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
9590310Scort19Serum corticosterone level QTL 196.30.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
9590268Scort13Serum corticosterone level QTL 133.260.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
9589136Insul27Insulin level QTL 2710.460.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)101147401056474010Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101448701189062041Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
1354587Kidm21Kidney mass QTL 213.3kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)101502851360430477Rat
631564Apr3Acute phase response QTL 33.9blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)101527595560275955Rat
6893350Bw99Body weight QTL 990.870.16body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
6893352Bw100Body weight QTL 1000.330.6body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
631532Cm50Cardiac mass QTL 506.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)101790711351786432Rat
1598852Anxrr19Anxiety related response QTL 195.07body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)101816784163167841Rat
2313055Bw96Body weight QTL 963.60.0001body mass (VT:0001259)body weight (CMO:0000012)101960648364606483Rat
2313087Bmd80Bone mineral density QTL 803.20.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)101960648364606483Rat
1554317Bmd4Bone mineral density QTL 49.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)101981604299406971Rat
1581497Esta1Estrogen-induced thymic atrophy QTL 1thymus mass (VT:0004954)thymus wet weight (CMO:0000855)102132980561345413Rat
724556Pur2Proteinuria QTL 25.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)102242750090627625Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
70224Eae3Experimental allergic encephalomyelitis QTL 34.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)102652195761345413Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
631542Bp82Blood pressure QTL 826.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102652195798952741Rat
2300171Bmd58Bone mineral density QTL 584.90.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)102694462871944628Rat
10402859Bp381Blood pressure QTL 3810.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102760646872606468Rat
2292441Bp308Blood pressure QTL 308arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102760646872606468Rat
724527Bp148Blood pressure QTL 1480.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102845313673453136Rat
1600371Mcs21Mammary carcinoma susceptibility QTL 213mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)102887565052200160Rat
1331762Rf40Renal function QTL 403.873kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)102929950464155584Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)1029299504107211142Rat
631557Bp136Blood pressure QTL 1360.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)103063205375632053Rat
1576311Pia26Pristane induced arthritis QTL 26joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103122402675632053Rat
1578779Tcas10Tongue tumor susceptibility QTL 103.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)103129743976297439Rat
1576319Cia29Collagen induced arthritis QTL 29joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103397392178973921Rat
61332Eau3Experimental allergic uveoretinitis QTL 30.004uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)103449055945579777Rat
1354614Hpcl1Hepatic cholesterol level QTL 13.3liver cholesterol amount (VT:0010498)liver cholesterol level (CMO:0001597)103539226751793994Rat
1358897Stresp6Stress response QTL 64.170.022blood norepinephrine amount (VT:0005663)plasma norepinephrine level (CMO:0001010)103539226764155584Rat
61441Btemp1Thermal response to stress QTL 14body temperature trait (VT:0005535)core body temperature (CMO:0001036)103539245763642539Rat
2317042Aia20Adjuvant induced arthritis QTL 203.38joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)103756507982565079Rat
2317043Aia7Adjuvant induced arthritis QTL 73.82joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)103756507982565079Rat

Markers in Region
RH137065  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10q22UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000000772   ⟹   ENSRNOP00000000772
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1040,208,223 - 40,211,975 (+)Ensembl
RefSeq Acc Id: NM_001109607   ⟹   NP_001103077
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81039,490,225 - 39,493,970 (+)NCBI
mRatBN7.21038,989,516 - 38,993,259 (+)NCBI
Rnor_6.01040,208,236 - 40,211,981 (+)NCBI
Rnor_5.01039,980,504 - 39,984,249 (+)NCBI
RGSC_v3.41040,271,895 - 40,275,640 (+)RGD
Celera1038,327,662 - 38,331,407 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001103077 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA18398 (Get FASTA)   NCBI Sequence Viewer  
  AAI68732 (Get FASTA)   NCBI Sequence Viewer  
  EDM04446 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000007437.1
  ENSRNOP00055041475
  ENSRNOP00060039880
  ENSRNOP00065006791
GenBank Protein P62959 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001103077   ⟸   NM_001109607
- UniProtKB: B5DEM9 (UniProtKB/Swiss-Prot),   P62959 (UniProtKB/Swiss-Prot),   D4A269 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000000772   ⟸   ENSRNOT00000000772
Protein Domains
HIT

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A269-F1-model_v2 AlphaFold D4A269 1-126 view protein structure
AF-P62959-F1-model_v2 AlphaFold P62959 1-126 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13697191
Promoter ID:EPDNEW_R7716
Type:initiation region
Name:Hint1_1
Description:histidine triad nucleotide binding protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01040,208,223 - 40,208,283EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1593411 AgrOrtholog
BioCyc Gene G2FUF-25098 BioCyc
Ensembl Genes ENSRNOG00000000622 Ensembl
  ENSRNOG00000005630 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00055029100 UniProtKB/Swiss-Prot
  ENSRNOG00060027623 UniProtKB/Swiss-Prot
  ENSRNOG00065006211 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000007437.3 UniProtKB/TrEMBL
  ENSRNOT00055050389 UniProtKB/Swiss-Prot
  ENSRNOT00060047936 UniProtKB/Swiss-Prot
  ENSRNOT00065009476 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.428.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Histidine_triad_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Histidine_triad_HIT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HIT-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HIT-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:690660 UniProtKB/Swiss-Prot
NCBI Gene 690660 ENTREZGENE
PANTHER HISTIDINE TRIAD NUCLEOTIDE-BINDING PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR23089 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam HIT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Hint1 PhenoGen
PRINTS HISTRIAD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE HIT_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HIT_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000000622 RatGTEx
  ENSRNOG00000005630 RatGTEx
  ENSRNOG00055029100 RatGTEx
  ENSRNOG00060027623 RatGTEx
  ENSRNOG00065006211 RatGTEx
Superfamily-SCOP SSF54197 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B5DEM9 ENTREZGENE
  D4A269 ENTREZGENE, UniProtKB/TrEMBL
  HINT1_RAT UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary B5DEM9 UniProtKB/Swiss-Prot
  P16436 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-17 Hint1  histidine triad nucleotide binding protein 1  LOC690660  similar to Histidine triad nucleotide-binding protein 1 (Adenosine 5-monophosphoramidase) (Protein kinase C inhibitor 1) (Protein kinase C-interacting protein 1) (PKCI-1)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC690660  similar to Histidine triad nucleotide-binding protein 1 (Adenosine 5-monophosphoramidase) (Protein kinase C inhibitor 1) (Protein kinase C-interacting protein 1) (PKCI-1)      Symbol and Name status set to provisional 70820 PROVISIONAL