Hpcl1 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Hpcl1 (Hepatic cholesterol level QTL 1) Rattus norvegicus

Symbol: Hpcl1
Name: Hepatic cholesterol level QTL 1
RGD ID: 1354614
Previously known as: Hcl1
Trait: liver cholesterol amount   (VT:0010498)    
Measurement Type: liver cholesterol level   (CMO:0001597)    
LOD Score: 3.3
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21035,392,267 - 51,793,994RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01036,584,373 - 53,645,194RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01036,354,729 - 53,396,227RGDRnor5.0
RGSC_v3.41036,649,906 - 53,800,677RGDRGSC3.4
RGSC_v3.11036,650,904 - 53,814,300RGD
Cross Type: Not Available
Strains Crossed: BXH/Ipcv HXB-1-43/Ipcv 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Candidate Gene Status
Srebf1 is a candidate Gene for Hpcl1

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
BXH/Ipcv  (IEA)
HXB-1-43/Ipcv  (IEA)

References

References - curated
# Reference Title Reference Citation
1. A genetic and correlation analysis of liver cholesterol concentration in rat recombinant inbred strains fed a high cholesterol diet. Bottger A, etal., Biochem Biophys Res Commun 1998 May 8;246(1):272-5.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
2967Zfp354azinc finger protein 354A103539624235408069Rat
41113907LOC120095486U2 spliceosomal RNA103543159035431802Rat
7644542LOC102546326uncharacterized LOC102546326103545689035471882Rat
41282977Msantd5l1Myb/SANT DNA binding domain containing 5 like 1103549715535499582Rat
1561674Msantd5Myb/SANT DNA binding domain containing 5103551692635526742Rat
1310274Clk4CDC-like kinase 4103552338235541387Rat
727898Col23a1collagen type XXIII alpha 1 chain103554909035839152Rat
41395344LOC120095095uncharacterized LOC120095095103564356235647037Rat
2293818Phykpl5-phosphohydroxy-L-lysine phospho-lyase103583996535863631Rat
69255Hnrnpabheterogeneous nuclear ribonucleoprotein A/B103585704035862935Rat
1309435Nhp2NHP2 ribonucleoprotein103587705735880399Rat
1559511Rmnd5brequired for meiotic nuclear division 5 homolog B103588125035892322Rat
7518009LOC102553843uncharacterized LOC102553843103589252435895226Rat
1308356N4bp3Nedd4 binding protein 3103589803135906704Rat
41188743LOC120095096uncharacterized LOC120095096103590688635912370Rat
6499350Trappc2btrafficking protein particle complex 2B103593822535942869Rat
1309451Sec24aSEC24 homolog A, COPII coat complex component103594690136024353Rat
1305590Sar1bsecretion associated, Ras related GTPase 1B103602441536054069Rat
1309152Jade2jade family PHD finger 2103607523936124210Rat
1560689Psmb3-ps9proteasome 20S subunit beta 3, pseudogene 9103613141536132138Rat
41116793LOC120095363U6 spliceosomal RNA103622744036227546Rat
41202251LOC120095388small nucleolar RNA SNORA70103622812336228246Rat
1308696Cdkn2aipnlCDKN2A interacting protein N-terminal like103623113436240569Rat
708345Ube2bubiquitin-conjugating enzyme E2B103624843436263379Rat
619874Cdkl3cyclin-dependent kinase-like 3103626321236349268Rat
3380Ppp2caprotein phosphatase 2 catalytic subunit alpha103635811036377864Rat
41013754LOC120095320protein FAM162A-like103638944736391357Rat
1359648Skp1S-phase kinase-associated protein 1103640198736417066Rat
41024400LOC120095419small nucleolar RNA SNORA42/SNORA80 family103640829736408432Rat
1305894Tcf7transcription factor 7103642344336454350Rat
621575Vdac1voltage-dependent anion channel 1103653230636559642Rat
1310352C10h5orf15similar to human chromosome 5 open reading frame 15103656398936576593Rat
40978598LOC120095229cytochrome b-c1 complex subunit 10-like103657209736574854Rat
7725831LOC102548512uncharacterized LOC102548512103659050736601778Rat
1590981Rps9-ps12ribosomal protein S9, pseudogene 12103660391436604743Rat
2321462Sdhd-ps2succinate dehydrogenase complex subunit D, pseudogene 2103666551736665975Rat
11393182LOC108348219uncharacterized LOC108348219103677128636774162Rat
2318953Rpl30l2ribosomal protein L30-like 2103683150436831985Rat
7712989LOC102548961uncharacterized LOC102548961103684575536861263Rat
41351702LOC120095321uncharacterized LOC120095321103690149536910274Rat
1307227Fstl4follistatin-like 4103691142237344545Rat
11402890LOC108352083uncharacterized LOC108352083103731910937342114Rat
628878Hspa4heat shock protein family A (Hsp70) member 4103740802537449080Rat
41155963Rps2-ps16ribosomal protein S2, pseudogene 16103744923037452916Rat
9453438LOC10369333660S ribosomal protein L14 pseudogene103746832437469665Rat
1308149Zcchc10zinc finger CCHC-type containing 10103747062837481027Rat
1311694Aff4ALF transcription elongation factor 4103749882537579751Rat
7736940Rpl10-ps1ribosomal protein L10, pseudogene 1103751659137518765Rat
1561235Leap2liver enriched antimicrobial peptide 2103758017237581244Rat
1562350Uqcrqubiquinol-cytochrome c reductase, complex III subunit VII103758586437589328Rat
71038Gdf9growth differentiation factor 9103758920037599970Rat
1308066Shroom1shroom family member 1103762114937631895Rat
1564616Sowahasosondowah ankyrin repeat domain family member A103764182337645390Rat
1308449Septin8septin 8103768464937713704Rat
621536Kif3akinesin family member 3a103772593037761183Rat
2898Il4interleukin 4103777120337776750Rat
68949Il13interleukin 13103779013037792687Rat
621542Rad50RAD50 double strand break repair protein103780935337861309Rat
2900Il5interleukin 5103787434237877213Rat
2920Irf1interferon regulatory factor 1103791715537924166Rat
7737472LOC102550895uncharacterized LOC102550895103792431138000504Rat
3702Slc22a5solute carrier family 22 member 5103800830338035474Rat
41136370Cdk4-ps2cyclin-dependent kinase 4, pseudogene 2103805133038054594Rat
1561735Slc22a21solute carrier family 22 (organic cation transporter), member 21103810411438133106Rat
621149Slc22a4solute carrier family 22 member 4103813333338179932Rat
3575Pdlim4PDZ and LIM domain 4103819868638212935Rat
1309673P4ha2prolyl 4-hydroxylase subunit alpha 2103824313638271983Rat
2321071Csnk2a1-ps1casein kinase 2 alpha 1, pseudogene 1103827522838276101Rat
621065Csf2colony stimulating factor 2103838694538388926Rat
2897Il3interleukin 3103840571638408066Rat
69403Acsl6acyl-CoA synthetase long-chain family member 6103843991438501182Rat
41212005LOC120095100uncharacterized LOC120095100103844807338454581Rat
41327488LOC120095099uncharacterized LOC120095099103847590138477636Rat
1566120Meikinmeiotic kinetochore factor103850815638556732Rat
2318339Fnip1folliculin interacting protein 1103856772838650824Rat
41294032LOC120095375U6 spliceosomal RNA103858821338588317Rat
1307645Rapgef6Rap guanine nucleotide exchange factor 6103865585438824227Rat
1563924Cdc42se2CDC42 small effector 2103883654938905056Rat
41147093LOC120095101uncharacterized LOC120095101103893107038933247Rat
1596391Lyrm7LYR motif containing 7103896429938983628Rat
1593411Hint1histidine triad nucleotide binding protein 1103898951638993259Rat
69224Gpx3glutathione peroxidase 3103902862439036695Rat
1309380Tnip1TNFAIP3 interacting protein 1103903704839084328Rat
621172Anxa6annexin A6103910139539156483Rat
2318188LOC10036240060S ribosomal protein L13-like103910273839104222Rat
41263071LOC120095102uncharacterized LOC120095102103914750039152632Rat
1590933Ybx1-ps20Y box binding protein 1, pseudogene 20103916118439162722Rat
1562251Ccdc69coiled-coil domain containing 69103917328239200358Rat
628651Gm2aganglioside GM2 activator103921922139231756Rat
1309092Slc36a3solute carrier family 36, member 3103924353139273433Rat
620492Slc36a2solute carrier family 36 member 2103927800239306082Rat
619801Slc36a1solute carrier family 36 member 1103931906239357374Rat
620656Fat2FAT atypical cadherin 2103936407239456324Rat
40988159LOC120095103uncharacterized LOC120095103103948067139488982Rat
3742Sparcsecreted protein acidic and cysteine rich103951639439538252Rat
11464772LOC10835221840S ribosomal protein S28 pseudogene103954036739540682Rat
621684Atox1antioxidant 1 copper chaperone103956485539579892Rat
621140G3bp1G3BP stress granule assembly factor 1103958686439620268Rat
2704Glra1glycine receptor, alpha 1103962585339727897Rat
9452287LOC103693333protein UXT pseudogene103966901739671564Rat
1563668Hmgb1l5high mobility group box 1 like 5103976865839769408Rat
40937826LOC120093045small nucleolar RNA SNORA19103982357539823689Rat
621155Nmur2neuromedin U receptor 2104016622340182078Rat
7744446LOC102552546uncharacterized LOC102552546104017013640173126Rat
41038360LOC120095322uncharacterized LOC120095322104025667040258702Rat
41352469LOC120095323uncharacterized LOC120095323104026208740264143Rat
7567332Ralgdsl7ral guanine nucleotide dissociation stimulator like 7104026753640269571Rat
40999178LOC120095104ral guanine nucleotide dissociation stimulator-like104027925140281351Rat
41303192LOC120095324uncharacterized LOC120095324104031106940313092Rat
41010124LOC120093097ral guanine nucleotide dissociation stimulator-like104032300740325012Rat
7558982LOC102552882uncharacterized LOC102552882104050900640600404Rat
7625432LOC102553022uncharacterized LOC102553022104060050540667976Rat
41182758LOC120095105uncharacterized LOC120095105104093548841040947Rat
7555271LOC102553349uncharacterized LOC102553349104106391341126313Rat
621531Gria1glutamate ionotropic receptor AMPA type subunit 1104121071341527283Rat
41261840LOC120095106uncharacterized LOC120095106104129779141366702Rat
1305362Fam114a2family with sequence similarity 114, member A2104166178741696790Rat
1359463Mfap3microfibril associated protein 3104169678841711490Rat
69409Galnt10polypeptide N-acetylgalactosaminyltransferase 10104182121641967618Rat
1309585Sap30lSAP30-like104197973041992307Rat
621206Hand1heart and neural crest derivatives expressed 1104200664642009213Rat
1306683Larp1La ribonucleoprotein 1, translational regulator104219137842246361Rat
9281539Atp5mkl1ATP synthase membrane subunit K like 1104221167142212027Rat
1586284Faxdc2fatty acid hydroxylase domain containing 2104224580842271679Rat
1306401Cnot8CCR4-NOT transcription complex, subunit 8104228161442294740Rat
41075565Trnas-aga43transfer RNA serine (anticodon AGA) 43104228305442283127Rat
1586275Gemin5gem (nuclear organelle) associated protein 5104229572942342902Rat
1309277Mrpl22mitochondrial ribosomal protein L22104234544642355779Rat
7752480Igtpl1interferon gamma induced GTPase like 1104235964542367390Rat
1306896Igtpinterferon gamma induced GTPase104237459042382410Rat
2324125Irgm2immunity-related GTPase family M member 2104238945242399604Rat
41138833LOC120095409small nucleolar RNA SNORA5104239359942393734Rat
11407955LOC108352086uncharacterized LOC108352086104241545842424581Rat
13085644930438A08RiklRIKEN cDNA 4930438A08 gene like104245994842477215Rat
11474460Trnae-cuc5transfer RNA glutamic acid (anticodon CUC) 5104248446642484537Rat
1306740Zfp692zinc finger protein 692104248457642496573Rat
11450453Trnal-caa1transfer RNA leucine (anticodon CAA) 1104248475642484861Rat
1359094Zfp672zinc finger protein 672104249655842512134Rat
1590939Sh3bp5lSH3 binding domain protein 5 like104251243742529564Rat
41110839LOC120095469small nucleolar RNA U13104255508242555186Rat
1586251Lypd8Ly6/Plaur domain containing 8104256183442572684Rat
41208375Ybx1-ps15Y box binding protein 1, pseudogene 15104258527142587462Rat
1586234Bpifb9aBPI fold containing family B, member 9A104259582242600781Rat
3683Lypd8l1LY6/PLAUR domain containing 8 like 1104261555542623925Rat
1586225Lypd9LY6/PLAUR domain containing 9104262649942637182Rat
621541Or2z2olfactory receptor family 2 subfamily Z member 2104263822742639174Rat
1333036Or2av10olfactory receptor family 2 subfamily AV member 10104265575042656703Rat
1333245Or2av9olfactory receptor family 2 subfamily AV member 9104267389042674897Rat
2319558Stk17b-ps1serine/threonine kinase 17b, pseudogene 1104268398842685078Rat
1332603Or2t48eolfactory receptor family 2 subfamily T member 48E104269036842691297Rat
1333640Or2t48bolfactory receptor family 2 subfamily T member 48B104275874542759674Rat
1333422Or2t48olfactory receptor family 2 subfamily T member 48104278677542787719Rat
1334020Or2t48c-ps1olfactory receptor family 2 subfamily T member 48C, pseudogene 1104280110442802047Rat
1333651Or2t46-ps1olfactory receptor family 2 subfamily T member 46, pseudogene 1104282201942823149Rat
1333061Or2t47eolfactory receptor family 2 subfamily T member 47E104284249242843454Rat
1332615Or2t48dolfactory receptor family 2 subfamily T member 48D104285597242856916Rat
1333736Or2t47dolfactory receptor family 2 subfamily T member 47D104288311442884076Rat
1332688Or2t29olfactory receptor family 2 subfamily T member 29104290725942908197Rat
1332670Or2t47olfactory receptor family 2 subfamily T member 47104291754542918492Rat
9196653Or2t43olfactory receptor family 2 subfamily T member 43104293524842936195Rat
1333324Or2t51-ps1olfactory receptor family 2 subfamily T member 51, pseudogene 1104294152542941822Rat
1333013Olr1428olfactory receptor 1428104294735342948300Rat
1334074Or2t52-ps1olfactory receptor family 2 subfamily T member 52, pseudogene 1104295266342953022Rat
1332914Or2t29b-ps1olfactory receptor family 2 subfamily T member 29B, pseudogene 1104295849542959431Rat
1334088Or2ab1olfactory receptor family 2 subfamily AB member 1104298067942981626Rat
1585065Lypd8l2LY6/PLAUR domain containing 8 like 2104299023742995285Rat
1334164Or11l3olfactory receptor family 11 subfamily L member 3104300763343008604Rat
1566174Trim58tripartite motif-containing 58104302293343038984Rat
1332706Olr1433olfactory receptor 1433104304242743046293Rat
1333938Or2ak6eolfactory receptor family 2 subfamily AK member 6E104307288443073804Rat
1333898Or2ak5eolfactory receptor family 2 subfamily AK member 5E104308986543090782Rat
1332835Or2ak4olfactory receptor family 2 subfamily AK member 4104311703943117959Rat
1332708Or2ak6colfactory receptor family 2 subfamily AK member 6C104314892443149844Rat
1332797Or2ak5g-ps1olfactory receptor family 2 subfamily AK member 5G, pseudogene 1104316213243163041Rat
1334096Or2ak6olfactory receptor family 2 subfamily AK member 6104319966843200588Rat
1332945Or2ak5dolfactory receptor family 2 subfamily AK member 5D104321257143213491Rat
1584857Or2ak4folfactory receptor family 2 subfamily AK member 4F104324767043248539Rat
1332943Or2ak5folfactory receptor family 2 subfamily AK member 5F104326904643269960Rat
1333051Or2ak4eolfactory receptor family 2 subfamily AK member 4E104328914243290062Rat
1334234Olr1444-psolfactory receptor pseudogene 1444104329436443294561Rat
1334167Or2ak5bolfactory receptor family 2 subfamily AK member 5B104331019843311118Rat
1333716Or2ak4b-ps1olfactory receptor family 2 subfamily AK member 4B, pseudogene 1104332812743329042Rat
1333495Or2w26-ps1olfactory receptor family 2 subfamily W member 26, pseudogene 1104334022243341116Rat
1333911Or2ak5olfactory receptor family 2 subfamily AK member 5104335448643355406Rat
1332774Or2ak6bolfactory receptor family 2 subfamily AK member 6B104337354643374466Rat
1559534Eno1l3enolase 1 like 3104338160543382794Rat
1332690Or2ak4colfactory receptor family 2 subfamily AK member 4C104340272743403644Rat
1333743Olr1451olfactory receptor 1451104342914043430069Rat
1333990Or2t44bolfactory receptor family 2 subfamily T member 44B104343681843437807Rat
1334077Or2t45bolfactory receptor family 2 subfamily T member 45B104346277543463701Rat
1333852Olr1454olfactory receptor 1454104347132243472314Rat
1334053Or2t45olfactory receptor family 2 subfamily T member 45104348576443486693Rat
1334326Or2t44olfactory receptor family 2 subfamily T member 44104350363043504622Rat
1561932Cfap144cilia and flagella associated protein 144104350982343519693Rat
1333878Or5af1bolfactory receptor family 5 subfamily AF member 1B104352270643523632Rat
1332948Or5af1olfactory receptor family 5 subfamily AF member 1104354744743548373Rat
1334155Or5af1colfactory receptor family 5 subfamily AF member 1C104356238443563310Rat
1332809Or9e1olfactory receptor family 9 subfamily E member 1104357779443578720Rat
1583913Cfl2-ps1cofilin-2, pseudogene 1104359068543591177Rat
1333085Or9e1bolfactory receptor family 9 subfamily E member 1B104359542243596348Rat
1561277ZfplZinc finger protein like104360529543647137Rat
1306633Zfp39zinc finger protein 39104365644443679743Rat
1559732Btnl10butyrophilin like 10104369408343701800Rat
1308636Rnf187ring finger protein 187104370949343715392Rat
1307520Hist3h2bahistone cluster 3, H2ba104372583643726465Rat
1583885H2bu1H2B.U histone 1104373273743733484Rat
621437H2ac25H2A clustered histone 25104373370243735254Rat
1583877H3f4H3.4 histone, cluster member104374070243741262Rat
69290Trim17tripartite motif-containing 17104374311143750929Rat
7518371LOC102555997uncharacterized LOC102555997104374639043758445Rat
1305448Trim11tripartite motif-containing 11104375829943771138Rat
631335Obscnobscurin, cytoskeletal calmodulin and titin-interacting RhoGEF104377411343919718Rat
6495127LOC100911111uncharacterized LOC100911111104378210443786129Rat
1306000Iba57iron-sulfur cluster assembly factor IBA57104394201743950807Rat
1562712Gjc2gap junction protein, gamma 2104396264243971358Rat
1309638Guk1guanylate kinase 1104397151443988658Rat
1308161Mrpl55mitochondrial ribosomal protein L55104398867643991841Rat
1304587C10h1orf35similar to human chromosome 1 open reading frame 35104399380943997287Rat
621270Arf1ADP-ribosylation factor 1104399798344014461Rat
1308057Wnt3aWnt family member 3A104403417444078366Rat
1305018Wnt9aWnt family member 9A104409414044121134Rat
1565729Prss38serine protease 38104415933944163019Rat
7739209LOC102546363uncharacterized LOC102546363104416722244185891Rat
735194Snap47synaptosome associated protein 47104419288644234435Rat
1307186Jmjd4jumonji domain containing 4104423446544242754Rat
1642427Zfp867zinc finger protein 867104424481344255223Rat
11445698LOC108352088ferritin light chain 1 pseudogene104425750144258431Rat
6488615Rpl18-ps6ribosomal protein L18, pseudogene 6104426352344264312Rat
1304611Zfp496zinc finger protein 496104426892344287795Rat
1308314Nlrp3NLR family, pyrin domain containing 3104432677044353814Rat
1333777Or2b11olfactory receptor family 2 subfamily B member 11104435839744359353Rat
1333969Or2aa1olfactory receptor family 2 subfamily AA member 1104437470244375661Rat
1582743Sbds-ps2Sbds, ribosome maturation factor, pseudogene 2104438817644397730Rat
41404206LOC120095414small nucleolar RNA SNORA44104439895344399078Rat
1333308Or2w25-ps1olfactory receptor family 2 subfamily W member 25, pseudogene 1104440245444403521Rat
2318500Rpl15-ps6ribosomal protein L15, pseudogene 6104441792844418542Rat
619947Mpripmyosin phosphatase Rho interacting protein104445394944573843Rat
41123932LOC120095110uncharacterized LOC120095110104451549644532629Rat
1311987Pld6phospholipase D family, member 6104457853644581187Rat
735088Flcnfolliculin104458862144607808Rat
2323819Dctpp1-ps1dCTP pyrophosphatase 1, pseudogene 1104460856944609566Rat
1303002Cops3COP9 signalosome subunit 3104461811544652807Rat
41140516LOC120095427U1 spliceosomal RNA104462913344629286Rat
1309622Nt5m5',3'-nucleotidase, mitochondrial104465284544680549Rat
1563669Med9mediator complex subunit 9104475066744765464Rat
619727Rasd1ras related dexamethasone induced 1104476645144775773Rat
3297Pemtphosphatidylethanolamine N-methyltransferase104477591044849990Rat
41129985Dnaja1-ps3DnaJ heat shock protein family (Hsp40) member A1, pseudogene 3104480690744809907Rat
7593322LOC102549418uncharacterized LOC102549418104489281744907459Rat
1308500Rai1retinoic acid induced 1104491323145008232Rat
69423Srebf1sterol regulatory element binding transcription factor 1104500763745029650Rat
1306728Tom1l2target of myb1 like 2 membrane trafficking protein104503603445158168Rat
1309150Drc3dynein regulatory complex subunit 3104514909445200659Rat
1305161Atpaf2ATP synthase mitochondrial F1 complex assembly factor 2104520565845221891Rat
1588894Gid4GID complex subunit 4104522155645247627Rat
1597232Rps4x-ps6ribosomal protein S4, X-linked, pseudogene 6104525177645252623Rat
1562380Drg2developmentally regulated GTP binding protein 2104525551245269971Rat
1561873Myo15amyosin XVA104527761945335953Rat
1309496Alkbh5alkB homolog 5, RNA demethylase104534488845366331Rat
40980764LOC120095380U7 small nuclear RNA104535895345359015Rat
1585025Rpl17l5ribosomal protein L17 like 5104536201245364050Rat
3012Llgl1LLGL scribble cell polarity complex component 1104537942345394096Rat
1307590FliiFLII, actin remodeling protein104539403245408051Rat
40939199LOC120095412small nucleolar RNA SNORA15104539922545399351Rat
1560728Mief2mitochondrial elongation factor 2104540805545414144Rat
1309320Top3aDNA topoisomerase III alpha104541921945457356Rat
1564621Smcr8SMCR8-C9orf72 complex subunit104545796245465101Rat
1312011Shmt1serine hydroxymethyltransferase 1104546869845490833Rat
1559667Btf3-ps15basic transcription factor 3, pseudogene 15104550194645502810Rat
1311243Dhrs7bdehydrogenase/reductase 7B104550434445537094Rat
41280493LOC120095440small nucleolar RNA SNORA48104551515045515292Rat
1309817Tmem11transmembrane protein 11104554275345557570Rat
1307740Natd1N-acetyltransferase domain containing 1104558015445590333Rat
7501583LOC102546946uncharacterized LOC102546946104559053045595233Rat
9217344Map2k3osmitogen-activated protein kinase kinase 3, opposite strand104559739645607992Rat
1306620Map2k3mitogen activated protein kinase kinase 3104560814545629492Rat
621660Kcnj12potassium inwardly-rectifying channel, subfamily J, member 12104569662145745528Rat
41016043Slirp-ps1SRA stem-loop interacting RNA binding protein, pseudogene 1104577345245776821Rat
1595998Tnfrsf13bTNF receptor superfamily member 13B104580186045824932Rat
1310354Usp22ubiquitin specific peptidase 22104582861945855468Rat
41358298LOC120095435small nucleolar RNA SNORA48104587342045873560Rat
2088Aldh3a1aldehyde dehydrogenase 3 family, member A1104589299345902680Rat
41277494LOC120095325uncharacterized LOC120095325104590644445908310Rat
1566257Rras2-ps1RAS related 2, pseudogene 1104591671945917890Rat
61866Aldh3a2aldehyde dehydrogenase 3 family, member A2104592831345949366Rat
40961371LOC120095114uncharacterized LOC120095114104594910045983918Rat
41186043LOC120095413small nucleolar RNA SNORA44104598895845989086Rat
1562382Slc47a2solute carrier family 47 member 2104599080646033937Rat
1311123Slc47a1solute carrier family 47 member 1104603411546088617Rat
11493649Trnaw-cca2transfer RNA tryptophan (anticodon CCA) 2104609242146092492Rat
3986Rnf112ring finger protein 112104612114646126691Rat
40992345LOC120095256uncharacterized LOC120095256104615568546165890Rat
1307841Mfap4microfibril associated protein 4104616715846170176Rat
621505Mapk7mitogen-activated protein kinase 7104617026446176262Rat
1305522B9d1B9 domain containing 1104618622246196309Rat
619773Epn2epsin 2104619778546259673Rat
41339074Trnav-aac10transfer RNA valine (anticodon AAC) 10104628524046285312Rat
1306884GrapGRB2-related adaptor protein104629896546352057Rat
1305232Slc5a10solute carrier family 5 member 10104635206046400795Rat
2322345Fam83gfamily with sequence similarity 83, member G104636302946388030Rat
620207Prpsap2phosphoribosyl pyrophosphate synthetase-associated protein 2104641081746445929Rat
1310181Ulk2unc-51 like autophagy activating kinase 2104645157846530462Rat
1308869Akap10A-kinase anchoring protein 10104654537146608730Rat
40970460LOC120095356U6 spliceosomal RNA104656686946566969Rat
1309718Specc1sperm antigen with calponin homology and coiled-coil domains 1104663894746912989Rat
41161480LOC120095487U2 spliceosomal RNA104675164646751840Rat
9743990Selenow-ps1selenoprotein W, pseudogene 1104686871946869420Rat
2050Adora2badenosine A2B receptor104694039446956772Rat
1310324Zswim7zinc finger, SWIM-type containing 7104695331146969800Rat
1582808Ttc19tetratricopeptide repeat domain 19104696972346997607Rat
3612Ncor1nuclear receptor co-repressor 1104699953647142294Rat
620437Piglphosphatidylinositol glycan anchor biosynthesis, class L104714216047199892Rat
1565681Cenpvcentromere protein V104721447947228552Rat
1595962Tmed4-ps1transmembrane p24 trafficking protein 4, pseudogene 1104723234847236981Rat
621562Ubbubiquitin B104724763047249335Rat
41346003LOC120095326thymosin beta-4-like104725993647260671Rat
3965Trpv2transient receptor potential cation channel, subfamily V, member 2104726552447294263Rat
40947194LOC120095429small nucleolar RNA SNORA29104727211347272242Rat
41093985Snord49bsmall nucleolar RNA, C/D box 49B104729694647297016Rat
41005054Snord49asmall nucleolar RNA, C/D box 49A104729748847297559Rat
1595947Lrrc75aleucine rich repeat containing 75A104729822247343301Rat
40963995Snord65small nucleolar RNA, C/D box 65104729839147298462Rat
41388597LOC120095115uncharacterized LOC120095115104731848447332559Rat
1311260Mmgt2membrane magnesium transporter 2104734344647362889Rat
1308617Zfp287zinc finger protein 287104739565047415610Rat
11446408Trnaw-cca3transfer RNA tryptophan (anticodon CCA) 3104743153447431605Rat
40943474LOC120095502U6 spliceosomal RNA104743497547435080Rat
41327418LOC120095403small nucleolar RNA SNORA67104744813747448270Rat
1561950Zfp286azinc finger protein 286A104745046947461267Rat
1309749Trim16tripartite motif-containing 16104748598247509010Rat
1563889Fbxw10F-box and WD repeat domain containing 10104751331347551909Rat
41224105LOC120095495U4 spliceosomal RNA104753320347533317Rat
1586539Tvp23btrans-golgi network vesicle protein 23 homolog B104755378947565203Rat
41394133LOC120095116uncharacterized LOC120095116104758840047590766Rat
7527442LOC102552952uncharacterized LOC102552952104761660147625398Rat
2323961Cdrt4CMT1A duplicated region transcript 4104762547047657493Rat
1310582Tekt3tektin 3104772963547763589Rat
3359Pmp22peripheral myelin protein 22104779570947825715Rat
2321712Ubbl2ubiquitin B like 2104791045847910703Rat
40937829LOC120095507U6 spliceosomal RNA104840259048402695Rat
41034231LOC120095117uncharacterized LOC120095117104853219348539710Rat
1307326Hs3st3b1heparan sulfate-glucosamine 3-sulfotransferase 3B1104856147348593970Rat
1594623Cox10cytochrome c oxidase assembly factor heme A:farnesyltransferase COX10104863099348742805Rat
41035134LOC120095119uncharacterized LOC120095119104869289748706492Rat
41257203LOC120095118uncharacterized LOC120095118104874285148746665Rat
41221742Trnaq-cugtransfer RNA glutamine (anticodon CUG)104880306848803140Rat
1561262Hs3st3a1heparan sulfate-glucosamine 3-sulfotransferase 3A1104909285049180676Rat
41348016LOC120095120uncharacterized LOC120095120104917405949180284Rat
628882Elac2elaC ribonuclease Z 2104963230849655614Rat
1305664Arhgap44Rho GTPase activating protein 44104965558349822876Rat
631347Myocdmyocardin104983321949928806Rat
40945377LOC120095121uncharacterized LOC120095121104990525749908359Rat
7523178LOC102554159uncharacterized LOC102554159105004628650199221Rat
1307040Map2k4mitogen activated protein kinase kinase 4105034322750447956Rat
1305130Zfp18zinc finger protein 18105047342850495707Rat
621799Dnah9dynein, axonemal, heavy chain 9105049617450864909Rat
40931177LOC120095122uncharacterized LOC120095122105086476351013804Rat
1564618Shisa6shisa family member 6105089774051192111Rat
7554930LOC102554448glyceraldehyde-3-phosphate dehydrogenase-like105123287851233686Rat
1587327Rps2-ps29ribosomal protein S2, pseudogene 29105126154451262251Rat
1561050Eno1-ps14enolase 1, pseudogene 14105129963251300633Rat
6499408Rpl15-ps7ribosomal protein L15, pseudogene 7105144754451448165Rat
1563963Pgam1-ps11phosphoglycerate mutase 1, pseudogene 11105144914151480570Rat
41236741LOC120095342histidine triad nucleotide-binding protein 1-like105158249551582818Rat
41127486LOC120095442small nucleolar RNA SNORA48105159446451594601Rat
7616564LOC102554726uncharacterized LOC102554726105160857151614414Rat
1565284Pirtphosphoinositide-interacting regulator of transient receptor potential channels105161320251628108Rat
40983152LOC120095123uncharacterized LOC120095123105162571051701636Rat
7617190Tmem238ltransmembrane protein 238 like105164787151662206Rat
1309576Tmem220transmembrane protein 220105171977751728792Rat
1309906AdprmADP-ribose/CDP-alcohol diphosphatase, manganese-dependent105173207351744635Rat
1559538Sco1synthesis of cytochrome C oxidase 1105174465651757246Rat
3138Myh3myosin heavy chain 3105177017751793994Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10792D10Wox10850103840624038407090Ratregion
10794D10Mgh9124103777589037776020Ratregion
10795D10Wox9182103777583737776025Ratregion
10874D10Rat83154104539382945394002Ratregion
10949D10Wox11150105178628251786432Ratregion
33909D10Mit4176103539226735392457Ratregion
34053D10Mit3150104003509440035242Ratregion
34669D10Mgh20172105177444051774612Ratregion
37286D10Rat222183105146576951465948Ratregion
36886D10Rat32168105177966251779830Ratregion
37082D10Rat223238104160339441603638Ratregion
37772DXRat53279104843223948432272Ratregion
37800D10Rat81221104807536348075571Ratregion
37842D10Rat85241104749400047494261Ratregion
37914D10Rat125237104577900645779243Ratregion
34803D10Rat62126104990028749900435Ratregion
35587D10Rat63160104593929545939457Ratregion
35731D10Rat33180103665256936652738Ratregion
35751D10Rat167383103908573139086127Ratregion
35751D10Rat167383103908573139086272Ratregion
35751D10Rat167383103908586439086127Ratregion
35829D10Rat31133105161152951611661Ratregion
38102D10Rat102233105050909650509331Ratregion
38292D10Rat73178104488647444886644Ratregion
40542D10Rat175146103706987937070007Ratregion
40626D10Rat172246103680015636800408Ratregion
40650D10Rat165227104136187541362094Ratregion
38446D10Rat130200104078865340788859Ratregion
38532D10Rat126206104148202241482228Ratregion
38588D10Rat76205103779507737795298Ratregion
40302D10Rat162157104944455149444706Ratregion
38824D10Rat78213104194452641944739Ratregion
39038D10Rat104214104066775440667928Ratregion
39148D10Rat173214103624440236244613Ratregion
41934D10Arb2432103671684636717314Ratregion
41941D10Arb5398105177954851779942Ratregion
41370D10Rat170135103975201339752150Ratregion
41394D10Rat16475104204567642045739Ratregion
41422D10Rat163224104794067647940913Ratregion
41422D10Rat163224104794067647941262Ratregion
41422D10Rat163224104794087147940913Ratregion
42912D10Rat214210103663022336630427Ratregion
42915D10Rat249239103896261838962867Ratregion
42916D10Rat247212104209333542093534Ratregion
42917D10Rat248214104153338541533591Ratregion
42919D10Rat245377104766646947666827Ratregion
42368D10Rat246220104155282941553060Ratregion
40890D10Rat166144104246758542467735Ratregion
40978D10Rat168241103772937437729617Ratregion
44729D10Got58217103646085536461072Ratregion
44730D10Got61206103940499139405197Ratregion
44731D10Got60239103916881139169050Ratregion
44732D10Wox25113103982373339823846Ratregion
44733D10Got63163104041321340413376Ratregion
44735D10Got64187104119884041199027Ratregion
44736D10Got67223104153463341534858Ratregion
44737D10Got65249104158337041583617Ratregion
44738D10Got71230104372778643728013Ratregion
44742D10Got72138104419044944190587Ratregion
44743D10Got73260104593919845939456Ratregion
44745D10Got74210104785027847850488Ratregion
44746D10Got75193104715872247158915Ratregion
44747D10Got76226104994457549944798Ratregion
625802D10Got70216104467287144673087Ratregion
59984D10Got59157103665973536659892Ratregion
59986D10Got62154104017374740173901Ratregion
59987D10Got68237104141582641416063Ratregion
59988D10Got69108104345988643459994Ratregion
59988D10Got69108104348279643482902Ratregion
62433D10Uia3371104847930948479680Ratregion
66369D10Mco20234104340393743404175Ratregion
66370D10Mco21206104254467642544880Ratregion
66371D10Mco22263104066888140669152Ratregion
66372D10Mco23187104159130841591513Ratregion
66373D10Mco24313104197287941973189Ratregion
66558D10Mco4200104074153240741723Ratregion
66560D10Mco5176103767367937673845Ratregion
66712D10Mco13284104509282545093113Ratregion
66720D10Mco17366104359350943593911Ratregion
66723D10Mco18156104248062842480782Ratregion
67228D10Arb4102104527423445274336Ratregion
67321D10Arb18107103598748135987588Ratregion
1579103D10Chm61250104711839247118637Ratregion
1628654D10Got204171105121785751218028Ratregion
1629422D10Got237133105169441251694545Ratregion
1641573D10Got413273104524243145242700Ratregion
1636558D10Got203239104018037340180612Ratregion
7205976Trpv2128104728988547291406Ratregion
7192558AA943188164103849922138499385Ratregion
7193084AA893014101104660923946609340Ratregion
5035987PMC357045P1177104459091844591095Ratregion
5035989PMC357045P6264104459762644597890Ratregion
5036003PMC64694P1425104782519547825620Ratregion
5038870RH127380185103637758636377771Ratregion
5038870RH127380185103637758636377771Ratregion
7206530UniSTS:546912437103827148038271917Ratregion
7206544UniSTS:547023287103813009738130384Ratregion
5036368UniSTS:143568140103777688737777027Ratregion
5039306RH127631185104476523944765424Ratregion
5036458Pmp22-rs204104782536347825567Ratregion
5039070RH127495210104782535847825568Ratregion
5036641AU048687222104123985141240077Ratregion
5037125SGC32016134103757886837579002Ratregion
5037179RH94236135105173233051732465Ratregion
5031308PMC133998P1801105177394151774737Ratregion
5031312PMC134715P180104501483445014914Ratregion
5031336PMC140962P1214104591692245917137Ratregion
5033995RH140963181104655171846551903Ratregion
7206208Hs3st3b1230104859319648593426Ratregion
7206222Hs3st3b1171104856159548561766Ratregion
7206222Hs3st3b1171104856159548561766Ratregion
7206222Hs3st3b1171104918045849180629Ratregion
7206222Hs3st3b1171104918045849180629Ratregion
5034113RH141411180104249666142496841Ratregion
5034177RH141658215104617035946170574Ratregion
5034458BF415156113104229575542295868Ratregion
5026484RH132390197104724537247245569Ratregion
5029195RH143877185103764529837645483Ratregion
5029233RH144020156103759978937599945Ratregion
5034560BE119529170104765727847657448Ratregion
5026644RH132996190104677647246776662Ratregion
5034688BG374359176103793023237930408Ratregion
5034722BF39154093104756748447567577Ratregion
5032225X57497116104152721141527327Ratregion
5035124AA943188198103849918738499385Ratregion
5035140AW532672179104646207646462255Ratregion
5027014RH134401187104229438442294571Ratregion
5029637BF386484154104169724641697400Ratregion
5035483AA851865217103587961835880228Ratregion
5029853AW530564152103635589436356046Ratregion
5032539STS-U29725251104617043046170681Ratregion
5032577C14M9041103932701739327058Ratregion
5027423AI385541150104546969445469844Ratregion
5029957BF400180181104791670047916881Ratregion
5032829RH136641181104235554242355723Ratregion
5035188AI175782193104238213042382323Ratregion
5035314AA874795185104456875944568944Ratregion
5035332BQ205587184104645340846453592Ratregion
5032903RH136910191104239924542399436Ratregion
5032941RH137040159104461827044618429Ratregion
5032969RH137147181104377087543771056Ratregion
5025086BB194447119104229639642296515Ratregion
5030353AW533577160104582970645829866Ratregion
5033029RH137330180103962007739620257Ratregion
5033115RH137651132105089933950899471Ratregion
5033121RH137674160103788900337889163Ratregion
5033147RH137771130103637889236379022Ratregion
502786716.MMHAP54FLF1.seq147103827423238274379Ratregion
5030505BF403413169104365220343652372Ratregion
5033277RH138240151104123188541232036Ratregion
502795140.MMHAP72FLF4.seq195105166763151667826Ratregion
5030571BE113386160104229675442297847Ratregion
5030571BE113386160104229768742297847Ratregion
5033459RH138913146104695275046952896Ratregion
5025450RH128362204104224593042246134Ratregion
5028135D11Mit317111104610357246103683Ratregion
5030791BE120073174104521373645213910Ratregion
5033677RH139704188104199200341992191Ratregion
5025630RH129055180103883659038836770Ratregion
5033717RH139858189105049546250495651Ratregion
5025808RH129756200104616990446170104Ratregion
5025940RH130279192104619404646194238Ratregion
5028523AI504915137103594695835947095Ratregion
5028525AI255295103104526965745269760Ratregion
5031059BE115478178104711174947111927Ratregion
5031129AA99728591103903706139037152Ratregion
5052117RH94849148104782521647825364Ratregion
5055065RH143586140104396386743964007Ratregion
5053643RH142767197104547424045474437Ratregion
5056287RH144291224104541361445413838Ratregion
5051685RH94599158103951643539516593Ratregion
5053991RH142967197104739580047395997Ratregion
5056771RH144570181104468354944683730Ratregion
5056807RH144592155104017290340173058Ratregion
5052115RH94848188104782499747825187Ratregion
5055435RH143799188104520861245209188Ratregion
5059532BE097217149104541668145416830Ratregion
5057792BF392792173103643043536430608Ratregion
5054889RH143483109104504620645046315Ratregion
5055913RH144075191104152733241527523Ratregion
5056035RH144145154103583604235836196Ratregion
5056277RH144286266103843838038438646Ratregion
5056383RH144347103103565759135657694Ratregion
5052253L06444152103759965937599811Ratregion
5058136BF386674170104552300345523173Ratregion
5055253RH143695102104370330543703407Ratregion
5055439RH143802114104481207844812192Ratregion
5052593RH125834223104554280445543027Ratregion
5052735RH142242192104249567742495869Ratregion
5052787RH142273166103607529936075465Ratregion
5059756BE103159178103716808537168263Ratregion
5055533RH143856115104582885845828973Ratregion
5055655RH143926247104534443745344684Ratregion
5055817RH144019262104676335246763614Ratregion
5052925RH142353191104224593142246122Ratregion
5058318AA859242219104456879444569013Ratregion
5058326AA859332206104641098346411189Ratregion
5052319U18310178105034533550345513Ratregion
5058456BE096165158104496743844967596Ratregion
5050144RH133887204104539367945393883Ratregion
5059312AI712467203104691195546912158Ratregion
505249804.MMHAP97FRB7.seq177104776548247765659Ratregion
5050822RH134278200104377399943774199Ratregion
5051064RH134418189104467889144679080Ratregion
5050192RH133914192103812888938129081Ratregion
5050392RH134030182105173523751735420Ratregion
5054235RH143108106104149153841491644Ratregion
5054291RH143140183104559747945597662Ratregion
5050612RH134157185103583883135839016Ratregion
5050662RH134186191104603440346034594Ratregion
5053223RH142524109104645175646451865Ratregion
5053345RH142595118103757339037573508Ratregion
5053367RH142607173104553303645533209Ratregion
5051499U30840105103655892336559028Ratregion
5051501AI844632142103882384138823983Ratregion
5051751RH94637187103787779237877979Ratregion
5041696RH129006151103657635736576507Ratregion
5044704RH130756181104536694945367130Ratregion
5040986RH128597187104699957946999766Ratregion
5041046RH128632188103951654439516733Ratregion
5041132RH128681190104546862445468814Ratregion
5041188RH128713155104539409745394252Ratregion
5041288RH128771181104257245542572636Ratregion
5045266RH131079195103800915838009353Ratregion
5045266RH131079195103810498738105182Ratregion
5045512RH131220156104965560749655763Ratregion
5045554RH131244211103770616937706380Ratregion
5043914RH130301212104697189546972107Ratregion
5045858RH1314190103935716039357358Ratregion
5041650RH128979212104675358346753799Ratregion
5044280RH130512194104196723341967436Ratregion
5048754RH133086197104714863347148830Ratregion
5048804RH133115180104618611946186299Ratregion
5046330RH131690201104200598942006190Ratregion
5046432RH131749213103583661435836829Ratregion
5047552RH132393153103709302137093174Ratregion
5044982RH130915213104252598242526806Ratregion
5046058RH131534181104695615046956331Ratregion
5047848RH132563213104590233845902644Ratregion
5047860RH132570210104672593246726140Ratregion
5049152RH133315196103797607737976273Ratregion
5046790RH131956213104695759846957811Ratregion
5048058RH132684185104691259746912782Ratregion
5048122RH132721220104559243545592655Ratregion
5048186RH132758181103589923535900023Ratregion
5048206RH132769203103626716336267366Ratregion
5041942RH129148215104592840145928616Ratregion
5042004RH129183155104536987145370026Ratregion
5042236RH129318181103770812537708306Ratregion
5047298RH132247210104500776645007976Ratregion
5047304RH132250187104476619744766384Ratregion
5047410RH132311219104362124943621468Ratregion
5042598RH1295310104461816544618382Ratregion
5048596RH132994180105172835051728530Ratregion
5048636RH133017197103882379938823996Ratregion
5048662RH133033194103630257436302768Ratregion
5049548RH133544194104652199246522186Ratregion
5049626RH133589193104990792049908113Ratregion
5040242RH128171187104562927245629460Ratregion
5039600RH127799216104520580045206013Ratregion
5042104RH129242186104558019645580382Ratregion
5039726RH127871202104378940343789605Ratregion
5042264RH129334166105175704951757215Ratregion
5042538RH129495181104229276442292945Ratregion
5040802RH128492198104683053846830736Ratregion
5043328RH129963180104526327345263781Ratregion
5043546RH130087184104458865644588840Ratregion
5040132RH128107185104503612845036313Ratregion
5042630RH129550211103624027636240487Ratregion
5042654RH129564211104539414845394359Ratregion
5042756RH129627188104503603245036222Ratregion
5043700RH130176181104166182241662003Ratregion
5040616RH128385200104476664744766847Ratregion
5042970RH129753195104397153743971732Ratregion
5043038RH129793181104553679645536977Ratregion
5043058RH129807188104541942945419617Ratregion
5043182RH129879209103903648439036693Ratregion
5072010RH135413196104555801145558207Ratregion
5072082RH136640207103911425539114462Ratregion
5072224RH136725147104108128141081584Ratregion
5073858RH137679152103733839437338546Ratregion
5074084RH137811174104453807744538251Ratregion
5075274RH138500121104426591744266038Ratregion
5075294RH138511166103685467236854838Ratregion
5075612RH138695223104782442347824646Ratregion
5074402RH137996170103654332536543495Ratregion
5076094RH138975205103764467037644875Ratregion
5072676RH136988186104855852148558707Ratregion
5072740RH137025161103800834238008503Ratregion
5072784RH137051218104221176742211985Ratregion
5076760RH139362188104199200341992191Ratregion
5074946RH138310158103778656037786718Ratregion
5076074RH138964225104373366243733887Ratregion
5075240RH138480164103585661235856776Ratregion
5079448RH141003184103896547338965657Ratregion
5076672RH139311170103844414038444310Ratregion
5076876RH139430122103917337539173497Ratregion
5079528RH141050180103791376737913947Ratregion
5079588RH141087200104645211146452311Ratregion
5079686RH141144218104619789446198112Ratregion
5077382RH139724200103764322237643422Ratregion
5077794RH139963210105049879150499001Ratregion
5077886RH140016180104526973945269919Ratregion
5076384RH139144250103885769838857948Ratregion
5077510RH139797202104619926446199466Ratregion
5078130RH140161209103625668736256896Ratregion
5078302RH140262181103923104239231223Ratregion
5078368RH140301206103770768237707888Ratregion
5079940RH141290182104700017847000360Ratregion
5079954RH141298202104373412243734324Ratregion
5078930RH140634199104594594145946763Ratregion
5078948RH140645189104609250346092692Ratregion
5080088RH141376202103588008135880283Ratregion
5078380RH140308180103951691339517093Ratregion
5078530RH140397139104250848742508626Ratregion
5079066RH140716128104729888347299011Ratregion
5079138RH140757207104594879445949001Ratregion
5070630RH134612195104399792143998116Ratregion
5070726RH134669196103850168438501880Ratregion
5070830RH134730203105179331051793943Ratregion
5072988RH137170181104965497449655155Ratregion
5073054RH137209200104645284946453049Ratregion
5079222RH140806136104396326943963405Ratregion
5079278RH140888220103935687339357093Ratregion
5080304RH141502196104739817647398372Ratregion
5080322RH141513216103624901636249232Ratregion
5073238RH137320183103540777435407957Ratregion
5080490RH141609162104399710343997265Ratregion
5078754RH140532105104379093543791040Ratregion
5070590RH134589182104524876445248946Ratregion
5070628RH134611218103637824536378463Ratregion
5072860RH137096206103641664136416847Ratregion
5071540RH135141180104503874545038925Ratregion
5074038RH137783239104493499544935234Ratregion
5070970RH134811181104152916941529368Ratregion
5070992RH134824190104863107548631265Ratregion
5073226RH137313193104607923446079427Ratregion
5074242RH137903245103705461037054855Ratregion
5073538RH137494191104513278245132973Ratregion
5072272RH136753120104618802646188146Ratregion
5072452RH136857206103624024436240450Ratregion
5074876RH138269128104981194749812075Ratregion
5061810AW527144155103613621436136369Ratregion
5063322BE107530185104524494845245133Ratregion
5063390BF398845207104169700341697210Ratregion
5063422BF404236171104451024844510419Ratregion
5065064BF405607146104701454947014695Ratregion
5067114AU047955205104888121448881418Ratregion
5067332AU047818219103802183538022054Ratregion
5067382AU047787151104186923541869386Ratregion
5067622AU047634124104330796643308090Ratregion
5068226AU047273157103756939337569548Ratregion
5068478AU047121199104019674040196939Ratregion
5068816AU046908259104253020842530469Ratregion
5068928AU046836106105100079051000894Ratregion
5070221RH94542159103792360937923770Ratregion
5069070AU046743237104017374540173982Ratregion
5069302AU046587210103592080235921012Ratregion
5060128BF388529138104363482743634965Ratregion
5060234BF400866148104498627644986424Ratregion
5062136BE112807165104519916845199333Ratregion
5065196BE121128150103617344936173599Ratregion
5060364AW525206195103910141239101607Ratregion
5062430BE106696188104372622743726415Ratregion
5063918BE120246150103718807837188228Ratregion
5060852BF389215170103638760736387777Ratregion
5062726AW534070187103935412339354310Ratregion
5062024BE106004202104398890143989103Ratregion
5062078BI28833790104603368946033779Ratregion
5062086BI288391190104196414641964835Ratregion
5063492BF398942192104169713241697324Ratregion
5065338BI297113205104249618142496386Ratregion
5060426BE110034151103624553136245682Ratregion
5062278BE106469199104536569345365892Ratregion
5061018BF389720214104504844045048653Ratregion
5061060AI112747204104524751445247719Ratregion
5061160BE111005196104451030444510500Ratregion
5064526BI302268121103605251836052639Ratregion
5064738BE108425150104745568347455833Ratregion
5064760BE108465152104691036146910513Ratregion
5064778BF411669216104447542844475644Ratregion
5061508BE105349150104524545245245602Ratregion
5063178BE113852178104625530246255480Ratregion
5063270BI289660215104638776746387982Ratregion
5063308BF398725195104635182546352020Ratregion
5066428AU048362197103921302839213225Ratregion
5061544BE105421172103850013638500308Ratregion
5086207AI136666200104224156042241760Ratregion
5087159AI227962174104699739746997571Ratregion
5087231AI406615159104394246943942628Ratregion
5087590PMC357045P10178104459195344592131Ratregion
5087594PMC357045P12269104458939544589664Ratregion
5087598PMC357045P3329104460104344601372Ratregion
5087602PMC357045P5299104459861244598911Ratregion
5087604PMC357045P7221104459623744596458Ratregion
5087608PMC357045P9175104459259944592774Ratregion
5082709BF41679890104124133041241420Ratregion
5082807BF390153172104121861241218784Ratregion
5082873BF390303150104404655144046701Ratregion
5089153AU048986107103966633339666370Ratregion
5089219AU049026231103628098336281214Ratregion
5089485AU049183267104438869644388963Ratregion
5090629AU049867223104152334341523566Ratregion
5083743AI237790199104644694446447143Ratregion
5083921AI230942199104517491045175109Ratregion
5081589BF420643111103589810935898220Ratregion
5084448AI233944250103868990538691001Ratregion
5084558AA851253109104729832247298431Ratregion
5084606AI409913152103936411639364268Ratregion
5090087AU049542268104559090545591171Ratregion
5090175AU049595218104126112841261344Ratregion
5087592PMC357045P11381104459084144591222Ratregion
5087596PMC357045P2737104460036644601103Ratregion
5087600PMC357045P4232104460023344600465Ratregion
5087606PMC357045P8259104459530344595562Ratregion
5084836AA800048136104379187843792014Ratregion
5084886AI229478215104868436348684578Ratregion
5084904AI172313181103865038238650563Ratregion
5082213BI280765196103959294739593143Ratregion
5082447BE119429162104745052947450691Ratregion
5085365BQ210088200103856702038567220Ratregion
5085437BM383035196105047967050479866Ratregion
5085459AW535242188103742708437427272Ratregion
5090663AU049887142103669629336696435Ratregion
5090763AU049949265103992648339926748Ratregion
5085104AW524490140104173573941735879Ratregion
5090475AU049772172104847292148473095Ratregion
5090529AU049805162103908104339081205Ratregion
5085591BI276688169104691029646910465Ratregion
5085631BM390633207104016668840166896Ratregion
5090273AU049653154103619821136198365Ratregion
5085884BQ204256209104195000441950213Ratregion
5086002AA891123176104609290046093076Ratregion
5086020BF387670216104249288842493104Ratregion
5084570AI177674148104582458545824733Ratregion
5086361AW252989181104399547343995834Ratregion
5081098RH141963182104609941046099592Ratregion
5084956AI180289134103594888935949023Ratregion
5086520AI013997199104583002345830222Ratregion
5086646BM388061202104392550443925706Ratregion
5081444AI555089211103554151235541723Ratregion
5083469BI282301165104574322645743391Ratregion
5083577BI276296160103827175038271913Ratregion
5081897BE118696185104365646643656651Ratregion
5081915BE118744176103915400839154184Ratregion
5083835AA893014176104660925346609430Ratregion
5084066AI011711106104983347849833584Ratregion
5502585RH125439201104207698942077190Ratregion
5502585RH125439201104207698942077190Ratregion
5503054Wnt3a517104403468644035203Ratregion
5503720U2AF2_79990104207694442077115Ratregion
5504488PMC22838P1107103635830036358407Ratregion
5504488PMC22838P1107103635830036358407Ratregion
5504582PMC309615P1294104984991949850213Ratregion
5505300Ppp2ca51103637385836373905Ratregion
5505402Map2k4964105034345050344414Ratregion
5505472REN71571232103770552737705759Ratregion
5505474REN71570248103770573337705981Ratregion
5505028Mapk7683104617453746175220Ratregion
5505192Gdf9116103759577937595895Ratregion
5505476REN71795259103764381037644069Ratregion
5505478REN72054232103757869737578929Ratregion
5505752UniSTS:492595569103687785136878420Ratregion
5505792UniSTS:493827168104859282948592997Ratregion
5506015UniSTS:497306487104499419344994680Ratregion
5506017UniSTS:497308701104500636545007066Ratregion
5506121UniSTS:498411661103642443436425095Ratregion
5506551MAP2K3_360952104562841745629369Ratregion
5506664ECD02756822103764405137644873Ratregion
5506891G47349249104472996444730215Ratregion
5500077UniSTS:236582239104170606741706306Ratregion
5499495stSG6016100103755212937553740Ratregion
5501153PMC150745P1109104984955449849663Ratregion
5500210G67083553104617446146175014Ratregion
5500075UniSTS:236593204104541329145413495Ratregion
5502435RH124832125103623117136231296Ratregion
5500677RH136619186103883714438837330Ratregion
5500541RH1359121406104224148042242886Ratregion
5500883RH65703141103741944537420560Ratregion
5503754UniSTS:469818271104617028246170553Ratregion
5501045PMC126018P10103642777236428998Ratregion
5501303D8S281707104554151045542217Ratregion
5501173PMC151926P2565103951707139518238Ratregion
5501592RH1133983104972087249720955Ratregion
5501884MARC_16763-16764:1020874272:1494103752351737524011Ratregion
5501659UniSTS:265529431103916170839162139Ratregion
5506056UniSTS:498260427105049454150494968Ratregion
Position Markers

Flank 1: (D10Mit4)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21035,392,267 - 35,392,457 (+)MAPPER
Rnor_6.01036,584,373 - 36,584,560NCBI
Rnor_5.01036,354,729 - 36,354,916UniSTS
RGSC_v3.41036,649,906 - 36,650,094RGD
RGSC_v3.41036,649,907 - 36,650,094UniSTS
RGSC_v3.11036,650,904 - 36,651,253RGD
Celera1034,749,309 - 34,749,496UniSTS
SHRSP x BN Map1031.7999UniSTS
SHRSP x BN Map1031.7999RGD
Cytogenetic Map10 RGD
Peak: (D10Mit4)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21035,392,267 - 35,392,457 (+)MAPPER
Rnor_6.01036,584,373 - 36,584,560NCBI
Rnor_5.01036,354,729 - 36,354,916UniSTS
RGSC_v3.41036,649,906 - 36,650,094RGD
RGSC_v3.41036,649,907 - 36,650,094UniSTS
RGSC_v3.11036,650,904 - 36,651,253RGD
Celera1034,749,309 - 34,749,496UniSTS
SHRSP x BN Map1031.7999UniSTS
SHRSP x BN Map1031.7999RGD
Cytogenetic Map10 RGD
Flank 2: (Myh3)
Rat AssemblyChrPosition (strand)Source
GRCr81052,269,185 - 52,293,000 (+)NCBI
mRatBN7.21051,770,177 - 51,793,994 (+)NCBI
mRatBN7.2 Ensembl1051,770,177 - 51,793,992 (+)Ensembl
UTH_Rnor_SHR_Utx1056,426,137 - 56,449,980 (+)NCBI
UTH_Rnor_SHRSP_BbbUtx_1.01055,916,097 - 55,939,940 (+)NCBI
UTH_Rnor_WKY_Bbb_1.01051,426,476 - 51,450,328 (+)NCBI
Rnor_6.01053,621,375 - 53,645,194 (+)NCBI
Rnor_6.0 Ensembl1053,621,375 - 53,645,194 (+)Ensembl
Rnor_5.01053,372,408 - 53,396,227 (+)NCBI
RGSC_v3.41053,776,858 - 53,800,677 (+)NCBI
RGSC_v3.11053,790,480 - 53,814,300 (+)NCBI
Celera1050,953,285 - 50,977,099 (+)NCBI
Cytogenetic Map10q24NCBI


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61441Btemp1Thermal response to stress QTL 14body temperature trait (VT:0005535)core body temperature (CMO:0001036)103539245763642539Rat
1549846Scl47Serum cholesterol level QTL 473.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)105057470795574707Rat
9589136Insul27Insulin level QTL 2710.460.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)101147401056474010Rat
1578779Tcas10Tongue tumor susceptibility QTL 103.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)103129743976297439Rat
631564Apr3Acute phase response QTL 33.9blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)101527595560275955Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
2293669Bmd33Bone mineral density QTL 334.50.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)104944455181709989Rat
631552Vetf2Vascular elastic tissue fragility QTL 24.50.0002aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)104114263386142633Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
631557Bp136Blood pressure QTL 1360.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)103063205375632053Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042045676104670812Rat
2293679Bmd30Bone mineral density QTL 303.50.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)104944455181709989Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10637574651375746Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)10580199062146030Rat
61332Eau3Experimental allergic uveoretinitis QTL 30.004uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)103449055945579777Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat
61463Bp12Blood pressure QTL 126.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104133325886333258Rat
2300218Hpcl2Hepatic cholesterol level QTL 2liver cholesterol amount (VT:0010498)liver cholesterol level (CMO:0001597)104502965095600334Rat
8694173Bw149Body weight QTL 1494.380.001body mass (VT:0001259)body weight gain (CMO:0000420)104444169989441699Rat
1554317Bmd4Bone mineral density QTL 49.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)101981604299406971Rat
1598852Anxrr19Anxiety related response QTL 195.07body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)101816784163167841Rat
1581497Esta1Estrogen-induced thymic atrophy QTL 1thymus mass (VT:0004954)thymus wet weight (CMO:0000855)102132980561345413Rat
724527Bp148Blood pressure QTL 1480.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102845313673453136Rat
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
1358897Stresp6Stress response QTL 64.170.022blood norepinephrine amount (VT:0005663)plasma norepinephrine level (CMO:0001010)103539226764155584Rat
1331762Rf40Renal function QTL 403.873kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)102929950464155584Rat
2300171Bmd58Bone mineral density QTL 584.90.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)102694462871944628Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101448701189062041Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)14232313287323132Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
9590310Scort19Serum corticosterone level QTL 196.30.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
9589030Epfw9Epididymal fat weight QTL 919.240.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)104444169989441699Rat
10402859Bp381Blood pressure QTL 3810.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102760646872606468Rat
2293652Bmd22Bone mineral density QTL 224.90.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)104944455181709989Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
70198BpQTLcluster9Blood pressure QTL cluster 92.94arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)104232313287323132Rat
1359017Hrtrt21Heart rate QTL 212.4heart pumping trait (VT:2000009)heart rate (CMO:0000002)105177294096772940Rat
6893352Bw100Body weight QTL 1000.330.6body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
724556Pur2Proteinuria QTL 25.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)102242750090627625Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10538701450387014Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10538701450387014Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1051770177107211142Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
1354587Kidm21Kidney mass QTL 213.3kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)101502851360430477Rat
6893350Bw99Body weight QTL 990.870.16body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
2317043Aia7Adjuvant induced arthritis QTL 73.82joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)103756507982565079Rat
70224Eae3Experimental allergic encephalomyelitis QTL 34.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)102652195761345413Rat
2317042Aia20Adjuvant induced arthritis QTL 203.38joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)103756507982565079Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10538701450387014Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)1029299504107211142Rat
2313087Bmd80Bone mineral density QTL 803.20.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)101960648364606483Rat
70364Bp72Blood pressure QTL 72arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)105112110096121100Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138328221Rat
631531Iresp2Immunoglobin response QTL26.3blood immunoglobulin E amount (VT:0002492)serum immunoglobulin E level (CMO:0002101)102291826836400810Rat
1354614Hpcl1Hepatic cholesterol level QTL 13.3liver cholesterol amount (VT:0010498)liver cholesterol level (CMO:0001597)103539226751793994Rat
631530Tls3T-lymphoma susceptibility QTL 300.0001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)105177461295600334Rat
631532Cm50Cardiac mass QTL 506.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)101790711351786432Rat
631535Cm51Cardiac mass QTL 513heart mass (VT:0007028)calculated heart weight (CMO:0000073)105178628291669536Rat
1576319Cia29Collagen induced arthritis QTL 29joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103397392178973921Rat
8552805Bw145Body weight QTL 1452.2body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)104194452678307017Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142315980Rat
1600371Mcs21Mammary carcinoma susceptibility QTL 213mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)102887565052200160Rat
2293705Bmd25Bone mineral density QTL 257.10.0001femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)104944455181709989Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1040035094102359817Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
7207811Bmd90Bone mineral density QTL 905.2femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)104944455181709989Rat
9590268Scort13Serum corticosterone level QTL 133.260.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
1576311Pia26Pristane induced arthritis QTL 26joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103122402675632053Rat
7411614Foco18Food consumption QTL 180.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)104444169989441699Rat
631547Bp87Blood pressure QTL 874.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104736947092369470Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
6893342Cm78Cardiac mass QTL 780.10.88heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)104287676679813922Rat
2292441Bp308Blood pressure QTL 308arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102760646872606468Rat
2313055Bw96Body weight QTL 963.60.0001body mass (VT:0001259)body weight (CMO:0000012)101960648364606483Rat
631542Bp82Blood pressure QTL 826.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102652195798952741Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Hpcl1


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-04-14 Hpcl1  Hepatic cholesterol level QTL 1  Hcl1    Symbol updated 1299863 APPROVED

RGD Curation Notes
Note Type Note Reference
qtl_general this locus is responsible for 64% of additive genetic variability and is a major determinant for liver cholesterol concentration 629576
qtl_general a significant correlation is present between intermediate density lipoprotein and liver cholesterol concentration 629576