Or1f21b (olfactory receptor family 1 subfamily F member 21B) - Rat Genome Database

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Gene: Or1f21b (olfactory receptor family 1 subfamily F member 21B) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Or1f21b
Name: olfactory receptor family 1 subfamily F member 21B
RGD ID: 1333251
Description: Predicted to enable G protein-coupled receptor activity and olfactory receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway and detection of chemical stimulus involved in sensory perception of smell. Orthologous to human OR1F1 (olfactory receptor family 1 subfamily F member 1); INTERACTS WITH vinclozolin.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: LOC100911409; olfactory receptor 1355; olfactory receptor 1361-like; olfactory receptor 1525; olfactory receptor gene Olr1355; olfactory receptor Olr1355; Olr1355; Olr1525; ratchr10-11379687-11378725_ORF
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81012,477,103 - 12,478,065 (-)NCBIGRCr8
mRatBN7.21011,972,457 - 11,973,419 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1011,899,986 - 11,904,247 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1011,969,158 - 11,973,419 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1016,662,090 - 16,663,052 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01016,150,919 - 16,151,881 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01011,685,892 - 11,686,854 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01012,311,730 - 12,312,692 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1012,311,730 - 12,312,692 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01012,126,207 - 12,209,156 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41011,378,725 - 11,379,687 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11011,378,724 - 11,379,687 (-)NCBI
Celera1010,842,159 - 10,843,121 (-)NCBICelera
Cytogenetic Map10q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Gibbs RA, etal., Nature 2004 Apr 1;428(6982):493-521.
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634329Pia15Pristane induced arthritis QTL 153.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10124158324Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135225947Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138328221Rat
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142315980Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
1576304Schws7Schwannoma susceptibility QTL 70.0115nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)10476552719816042Rat
631828Alc5Alcohol consumption QTL 52.4consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10514402717245662Rat
737820Alc9Alcohol consumption QTL 92.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10514402719233348Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10538701450387014Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10538701450387014Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10538701450387014Rat
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)10580199062146030Rat
631660Hcar1Hepatocarcinoma resistance QTL 13.40.0001liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)10615418215990232Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10637574651375746Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
9590310Scort19Serum corticosterone level QTL 196.30.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
9590268Scort13Serum corticosterone level QTL 133.260.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
9589136Insul27Insulin level QTL 2710.460.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)101147401056474010Rat


Expression


Sequence


RefSeq Acc Id: ENSRNOT00000073059   ⟹   ENSRNOP00000064204
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1012,311,730 - 12,312,692 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000101770   ⟹   ENSRNOP00000097608
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1011,969,158 - 11,973,419 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000107258   ⟹   ENSRNOP00000087310
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1011,899,986 - 11,904,247 (-)Ensembl
RefSeq Acc Id: NM_214823   ⟹   NP_999988
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81012,477,103 - 12,478,065 (-)NCBI
mRatBN7.21011,972,457 - 11,973,419 (-)NCBI
Rnor_6.01012,311,730 - 12,312,692 (-)NCBI
Rnor_5.01012,126,207 - 12,209,156 (-)NCBI
RGSC_v3.41011,378,725 - 11,379,687 (-)RGD
Celera1010,842,159 - 10,843,121 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_999988 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_999988   ⟸   NM_214823
- Sequence:
RefSeq Acc Id: ENSRNOP00000064204   ⟸   ENSRNOT00000073059
RefSeq Acc Id: ENSRNOP00000087310   ⟸   ENSRNOT00000107258
RefSeq Acc Id: ENSRNOP00000097608   ⟸   ENSRNOT00000101770

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1333251 AgrOrtholog
BioCyc Gene G2FUF-25977 BioCyc
Ensembl Genes ENSRNOG00000050126 Ensembl
  ENSRNOG00000066553 Ensembl
  ENSRNOG00000067870 Ensembl
NCBI Gene 287080 ENTREZGENE
PhenoGen Or1f21b PhenoGen
RatGTEx ENSRNOG00000050126 RatGTEx
  ENSRNOG00000066553 RatGTEx
  ENSRNOG00000067870 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-08-16 Or1f21b  olfactory receptor family 1 subfamily F member 21B  Olr1355  olfactory receptor 1355  Symbol and Name Changed 1299863 APPROVED
2022-06-02 Olr1355  olfactory receptor 1355  Olr1525  olfactory receptor 1525  Data merged from RGD:149736151 737654 PROVISIONAL
2021-08-09 Olr1525  olfactory receptor 1525      Symbol and Name status set to provisional 45752 PROVISIONAL
2021-03-09 Olr1355  olfactory receptor 1355  LOC100911409  olfactory receptor 1361-like  Data merged from RGD:6493276 737654 PROVISIONAL
2012-07-05 LOC100911409  olfactory receptor 1361-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 Olr1355  olfactory receptor 1355   Olr1355_predicted  olfactory receptor 1355 (predicted)  'predicted' is removed 2292626 APPROVED
2005-02-04 Olr1355_predicted  olfactory receptor 1355 (predicted)      Symbol and Name status set to approved 70820 APPROVED