D10Got6 Marker Search Result - Rat Genome Database

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Pathways

Marker: D10Got6

Symbol: D10Got6
Previously known as: OT38.12; oxsts737; 
RGD ID: 59985
Expected Size: 274 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2103,406,320 - 3,406,594 (+)MAPPERmRatBN7.2
Rnor_6.0102,847,625 - 2,847,898NCBIRnor6.0
Rnor_5.0101,728,277 - 1,728,550UniSTSRnor5.0
RGSC_v3.4103,219,701 - 3,219,975RGDRGSC3.4
RGSC_v3.4103,219,702 - 3,219,975UniSTSRGSC3.4
RGSC_v3.1103,219,701 - 3,219,975RGD
Celera102,440,770 - 2,441,043UniSTS
Is Marker For: Strains:   DA.PVG.1AV1-(D10Got6-D10Rat184)/Kini  
QTLs:   Neuinf3  
Genes:   Shisa9   LOC100364238  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer GGTGTGGCTCAATGTGCC
Reverse Primer CATTTGCCAAGGATTTCACAT
 

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
2320726Shisa9shisa family member 91033356163629334Rat

Nucleotide Sequences
GenBank Nucleotide AU028302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH616899.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634329Pia15Pristane induced arthritis QTL 153.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10124158324Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135225947Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138328221Rat
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142315980Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
1549898Neuinf3Neuroinflammation QTL 326.4nervous system integrity trait (VT:0010566)MHC Class II RT1A-positive spinal cord ventral horn area to total spinal cord ventral horn area ratio (CMO:0001980)1034063205387112Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 100302787 UniSTS
  100361134 UniSTS
  100364238 UniSTS
UniSTS 112458 UniSTS