Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Cldn6 (claudin 6) Rattus norvegicus
Analyze
Symbol: Cldn6
Name: claudin 6
Description: Predicted to have virus receptor activity. Predicted to be involved in cell-cell junction organization. Predicted to localize to the apicolateral plasma membrane and bicellular tight junction. Orthologous to human CLDN6 (claudin 6); PARTICIPATES IN hepatitis C pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 3'-amino-3'-deoxy-N(6),N(6)-dimethyladenosine; aflatoxin B1.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: claudin-6; LOC287098
Orthologs:
Homo sapiens (human) : CLDN6 (claudin 6)  HGNC  Alliance
Mus musculus (house mouse) : Cldn6 (claudin 6)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Cldn6 (claudin 6)
Pan paniscus (bonobo/pygmy chimpanzee) : CLDN6 (claudin 6)
Canis lupus familiaris (dog) : CLDN6 (claudin 6)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Cldn6 (claudin 6)
Sus scrofa (pig) : CLDN6 (claudin 6)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01012,999,256 - 13,002,860 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01012,822,308 - 12,825,905 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41012,944,503 - 12,947,271 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11012,945,821 - 12,946,518 (+)NCBI
Celera1012,406,544 - 12,409,312 (+)NCBICelera
Cytogenetic Map10q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Cldn6
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1308837
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.