Hmmr (hyaluronan-mediated motility receptor) - Rat Genome Database

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Gene: Hmmr (hyaluronan-mediated motility receptor) Rattus norvegicus
Analyze
Symbol: Hmmr
Name: hyaluronan-mediated motility receptor
RGD ID: 2805
Description: Predicted to enable cargo receptor activity. Predicted to be involved in hyaluronan catabolic process and receptor-mediated endocytosis. Predicted to be located in centrosome; cytosol; and spindle. Human ortholog(s) of this gene implicated in breast cancer. Orthologous to human HMMR (hyaluronan mediated motility receptor); PARTICIPATES IN cell-extracellular matrix signaling pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 2-amino-2-deoxy-D-glucopyranose.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hyaluronan mediated motility receptor; hyaluronan mediated motility receptor (RHAMM); intracellular hyaluronic acid-binding protein; receptor for hyaluronan-mediated motility; RHAMM
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81025,635,249 - 25,665,389 (-)NCBIGRCr8
mRatBN7.21025,132,933 - 25,163,029 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1025,132,977 - 25,163,060 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1029,896,163 - 29,925,311 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01029,384,690 - 29,413,838 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01024,871,353 - 24,900,499 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01025,861,490 - 25,890,639 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1025,861,490 - 25,890,639 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01025,712,357 - 25,740,811 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41025,733,375 - 25,762,825 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11025,734,423 - 25,763,874 (-)NCBI
Celera1024,693,386 - 24,722,348 (-)NCBICelera
Cytogenetic Map10q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,1-dichloroethene  (ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-diaminotoluene  (ISO)
2-amino-2-deoxy-D-glucopyranose  (EXP)
2-butoxyethanol  (ISO)
2-methylcholine  (ISO)
2-palmitoylglycerol  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-methylcholanthrene  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
5-fluorouracil  (ISO)
acetamide  (EXP)
acetylsalicylic acid  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
aflatoxin B1  (EXP,ISO)
aflatoxin M1  (ISO)
aldehydo-D-glucosamine  (EXP)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
ammonium chloride  (EXP)
antimycin A  (ISO)
aristolochic acid A  (EXP)
arsenite(3-)  (ISO)
azathioprine  (ISO)
azoxystrobin  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-D-glucosamine  (EXP)
beta-lapachone  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
buta-1,3-diene  (ISO)
cadmium dichloride  (EXP,ISO)
calcipotriol  (ISO)
calcitriol  (ISO)
chlorpyrifos  (ISO)
chromium(6+)  (ISO)
chrysene  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
copper(II) sulfate  (ISO)
cordycepin  (ISO)
coumestrol  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
D-glucose  (ISO)
DDE  (ISO)
deguelin  (ISO)
diallyl trisulfide  (ISO)
dibutyl phthalate  (EXP,ISO)
dichloroacetic acid  (ISO)
dicrotophos  (ISO)
diethyl malate  (ISO)
dimethylarsinous acid  (ISO)
dimethylselenide  (ISO)
dioxygen  (EXP)
doxorubicin  (EXP,ISO)
Enterolactone  (ISO)
erythromycin estolate  (EXP)
ethanol  (ISO)
flavonoids  (EXP)
formaldehyde  (ISO)
fructose  (ISO)
glucose  (ISO)
glyphosate  (ISO)
hyaluronic acid  (ISO)
hydrogen peroxide  (ISO)
irinotecan  (ISO)
kojic acid  (ISO)
lead diacetate  (ISO)
lead(0)  (ISO)
leflunomide  (ISO)
levonorgestrel  (ISO)
lidocaine  (EXP)
lucanthone  (ISO)
mercury dichloride  (EXP)
Mesaconitine  (EXP)
methotrexate  (ISO)
methylmercury chloride  (ISO)
methylphenidate  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
N-Nitrosopyrrolidine  (ISO)
niclosamide  (ISO)
O-methyleugenol  (ISO)
ochratoxin A  (EXP)
oxaliplatin  (EXP)
ozone  (ISO)
paclitaxel  (ISO)
palbociclib  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
PCB138  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenformin  (EXP)
phenobarbital  (ISO)
picoxystrobin  (ISO)
pirinixic acid  (EXP,ISO)
piroxicam  (ISO)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
progesterone  (ISO)
propanal  (ISO)
propiconazole  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
rotenone  (EXP,ISO)
senecionine  (EXP)
Senkirkine  (EXP)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (ISO)
succimer  (ISO)
sulforaphane  (ISO)
sulindac  (ISO)
sunitinib  (ISO)
testosterone  (ISO)
testosterone undecanoate  (ISO)
tetrachloromethane  (ISO)
tetrathiomolybdate(2-)  (ISO)
thioacetamide  (EXP)
topotecan  (EXP)
tremolite asbestos  (ISO)
tributylstannane  (EXP)
trichloroethene  (ISO)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
trovafloxacin  (ISO)
tungsten  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
verteporfin  (ISO)
vincaleukoblastine  (ISO)
vorinostat  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cell surface  (IEA)
centrosome  (IEA,ISO)
cytoplasm  (IEA,ISO)
cytosol  (IEA,ISO)
microtubule cytoskeleton  (ISO)
spindle  (IEA,ISO,ISS)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
2. Identification of sequence, protein isoforms, and distribution of the hyaluronan-binding protein RHAMM in adult and developing rat brain. Lynn BD, etal., J Comp Neurol 2001 Oct 22;439(3):315-30.
3. Sequence, protein expression and extracellular-regulated kinase association of the hyaladherin RHAMM (receptor for hyaluronan mediated motility) in PC12 cells. Lynn BD, etal., Neurosci Lett 2001 Jun 22;306(1-2):49-52.
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. GOA pipeline RGD automated data pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
Additional References at PubMed
PMID:16037485   PMID:19946888   PMID:21281821   PMID:23768790   PMID:25253654   PMID:28217782  


Genomics

Comparative Map Data
Hmmr
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81025,635,249 - 25,665,389 (-)NCBIGRCr8
mRatBN7.21025,132,933 - 25,163,029 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1025,132,977 - 25,163,060 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1029,896,163 - 29,925,311 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01029,384,690 - 29,413,838 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01024,871,353 - 24,900,499 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01025,861,490 - 25,890,639 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1025,861,490 - 25,890,639 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01025,712,357 - 25,740,811 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41025,733,375 - 25,762,825 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11025,734,423 - 25,763,874 (-)NCBI
Celera1024,693,386 - 24,722,348 (-)NCBICelera
Cytogenetic Map10q12NCBI
HMMR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385163,460,632 - 163,491,941 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5163,460,203 - 163,491,941 (+)EnsemblGRCh38hg38GRCh38
GRCh375162,887,638 - 162,918,947 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365162,820,241 - 162,851,525 (+)NCBINCBI36Build 36hg18NCBI36
Build 345162,820,240 - 162,851,523NCBI
Celera5158,921,625 - 158,953,052 (+)NCBICelera
Cytogenetic Map5q34NCBI
HuRef5157,987,202 - 158,018,630 (+)NCBIHuRef
CHM1_15162,319,984 - 162,351,413 (+)NCBICHM1_1
T2T-CHM13v2.05163,995,809 - 164,027,111 (+)NCBIT2T-CHM13v2.0
Hmmr
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391140,592,215 - 40,624,290 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1140,592,222 - 40,624,249 (-)EnsemblGRCm39 Ensembl
GRCm381140,701,388 - 40,733,464 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1140,701,395 - 40,733,422 (-)EnsemblGRCm38mm10GRCm38
MGSCv371140,514,890 - 40,546,939 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361140,545,177 - 40,576,845 (-)NCBIMGSCv36mm8
Celera1144,551,316 - 44,585,491 (-)NCBICelera
Cytogenetic Map11A5NCBI
cM Map1124.4NCBI
Hmmr
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540816,865,175 - 16,898,328 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540816,865,066 - 16,895,918 (+)NCBIChiLan1.0ChiLan1.0
HMMR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24158,633,386 - 158,665,136 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15156,772,932 - 156,804,681 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05158,837,511 - 158,868,800 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15165,614,127 - 165,645,478 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5165,614,127 - 165,645,478 (+)Ensemblpanpan1.1panPan2
HMMR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1447,743,576 - 47,786,982 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl447,744,433 - 47,786,987 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha447,636,932 - 47,680,143 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0448,174,453 - 48,217,932 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl448,173,528 - 48,218,336 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1447,957,849 - 48,001,109 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0448,116,318 - 48,159,393 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0448,635,989 - 48,679,214 (-)NCBIUU_Cfam_GSD_1.0
Hmmr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213102,120,763 - 102,150,196 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936515571,139 - 600,132 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936515570,112 - 599,400 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HMMR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1660,290,001 - 60,331,936 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11660,290,684 - 60,332,411 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21665,130,340 - 65,172,451 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103244927
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12365,732,343 - 65,765,511 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2365,732,553 - 65,765,511 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236665734,011 - 37,804 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hmmr
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473326,319,678 - 26,351,234 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473326,319,635 - 26,351,576 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Hmmr
223 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
6893352Bw100Body weight QTL 1000.330.6body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
9589136Insul27Insulin level QTL 2710.460.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)101147401056474010Rat
631564Apr3Acute phase response QTL 33.9blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)101527595560275955Rat
724556Pur2Proteinuria QTL 25.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)102242750090627625Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10538701450387014Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10538701450387014Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
1354587Kidm21Kidney mass QTL 213.3kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)101502851360430477Rat
6893350Bw99Body weight QTL 990.870.16body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10637574651375746Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135225947Rat
7387235Uae41Urinary albumin excretion QTL 415.260.1874urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)10129497586Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)10580199062146030Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10538701450387014Rat
1554317Bmd4Bone mineral density QTL 49.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)101981604299406971Rat
1598852Anxrr19Anxiety related response QTL 195.07body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)101816784163167841Rat
2313087Bmd80Bone mineral density QTL 803.20.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)101960648364606483Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138328221Rat
1581497Esta1Estrogen-induced thymic atrophy QTL 1thymus mass (VT:0004954)thymus wet weight (CMO:0000855)102132980561345413Rat
631531Iresp2Immunoglobin response QTL26.3blood immunoglobulin E amount (VT:0002492)serum immunoglobulin E level (CMO:0002101)102291826836400810Rat
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
631532Cm50Cardiac mass QTL 506.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)101790711351786432Rat
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142315980Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101448701189062041Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
9590268Scort13Serum corticosterone level QTL 133.260.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
9590310Scort19Serum corticosterone level QTL 196.30.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
2313055Bw96Body weight QTL 963.60.0001body mass (VT:0001259)body weight (CMO:0000012)101960648364606483Rat

Markers in Region
RH94632  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21025,133,650 - 25,133,849 (+)MAPPERmRatBN7.2
Rnor_6.01025,861,372 - 25,861,570NCBIRnor6.0
Rnor_5.01025,712,239 - 25,712,437UniSTSRnor5.0
RGSC_v3.41025,733,257 - 25,733,455UniSTSRGSC3.4
Celera1024,693,268 - 24,693,466UniSTS
Cytogenetic Map10q12UniSTS
AU048333  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21025,136,453 - 25,136,660 (+)MAPPERmRatBN7.2
Rnor_6.01025,864,177 - 25,864,383NCBIRnor6.0
Rnor_5.01025,715,044 - 25,715,250UniSTSRnor5.0
RGSC_v3.41025,736,062 - 25,736,268UniSTSRGSC3.4
Celera1024,696,070 - 24,696,276UniSTS
Cytogenetic Map10q12UniSTS
UniSTS:236554  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21025,145,915 - 25,146,555 (+)MAPPERmRatBN7.2
Rnor_6.01025,873,663 - 25,874,302NCBIRnor6.0
Rnor_5.01025,723,835 - 25,724,474UniSTSRnor5.0
RGSC_v3.41025,746,224 - 25,746,863UniSTSRGSC3.4
Celera1024,705,539 - 24,706,178UniSTS
Cytogenetic Map10q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000085499   ⟹   ENSRNOP00000070444
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1025,134,540 - 25,161,001 (-)Ensembl
Rnor_6.0 Ensembl1025,861,490 - 25,890,639 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000098903   ⟹   ENSRNOP00000085400
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1025,132,977 - 25,163,060 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000114372   ⟹   ENSRNOP00000077422
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1025,134,540 - 25,146,180 (-)Ensembl
RefSeq Acc Id: NM_012964   ⟹   NP_037096
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81025,636,041 - 25,665,215 (-)NCBI
mRatBN7.21025,133,769 - 25,162,943 (-)NCBI
Rnor_6.01025,861,490 - 25,890,639 (-)NCBI
Rnor_5.01025,712,357 - 25,740,811 (-)NCBI
RGSC_v3.41025,733,375 - 25,762,825 (-)RGD
Celera1024,693,386 - 24,722,348 (-)RGD
Sequence:
RefSeq Acc Id: XM_039085276   ⟹   XP_038941204
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81025,635,249 - 25,665,389 (-)NCBI
mRatBN7.21025,132,933 - 25,163,029 (-)NCBI
RefSeq Acc Id: XM_039085278   ⟹   XP_038941206
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81025,635,249 - 25,655,705 (-)NCBI
mRatBN7.21025,132,933 - 25,153,433 (-)NCBI
RefSeq Acc Id: NP_037096   ⟸   NM_012964
- UniProtKB: A0A8I6A3Z3 (UniProtKB/TrEMBL),   Q9WUF7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000070444   ⟸   ENSRNOT00000085499
RefSeq Acc Id: XP_038941204   ⟸   XM_039085276
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038941206   ⟸   XM_039085278
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000077422   ⟸   ENSRNOT00000114372
Ensembl Acc Id: ENSRNOP00000085400   ⟸   ENSRNOT00000098903
Protein Domains
Hyaluronan-mediated motility receptor C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P97779-F1-model_v2 AlphaFold P97779 1-498 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13697106
Promoter ID:EPDNEW_R7631
Type:multiple initiation site
Name:Hmmr_1
Description:hyaluronan-mediated motility receptor
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01025,890,667 - 25,890,727EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2805 AgrOrtholog
BioCyc Gene G2FUF-25492 BioCyc
Ensembl Genes ENSRNOG00000059894 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000085499.2 UniProtKB/TrEMBL
  ENSRNOT00000098903.1 UniProtKB/TrEMBL
  ENSRNOT00000114372.1 UniProtKB/TrEMBL
InterPro HMMR_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IHABP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:25460 UniProtKB/TrEMBL
NCBI Gene 25460 ENTREZGENE
PANTHER HYALURONAN MEDIATED MOTILITY RECEPTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR18956 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam HMMR_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HMMR_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Hmmr PhenoGen
RatGTEx ENSRNOG00000059894 RatGTEx
TIGR TC228217
UniProt A0A0G2JXY1_RAT UniProtKB/TrEMBL
  A0A8I5XW44_RAT UniProtKB/TrEMBL
  A0A8I6A3Z3 ENTREZGENE, UniProtKB/TrEMBL
  A6HDK6_RAT UniProtKB/TrEMBL
  A6HDK7_RAT UniProtKB/TrEMBL
  HMMR_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q9WUF7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-01-20 Hmmr  hyaluronan-mediated motility receptor  Hmmr  hyaluronan mediated motility receptor (RHAMM)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Hmmr  hyaluronan mediated motility receptor (RHAMM)    hyaluronan mediated motility receptor  Name updated 1299863 APPROVED
2002-06-10 Hmmr  Hyaluronan mediated motility receptor (RHAMM)      Symbol and Name status set to approved 70586 APPROVED