Kif3a (kinesin family member 3a) - Rat Genome Database

Name: Kif3a
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Kif3a (kinesin family member 3a) Rattus norvegicus

Analyze

Symbol:

Kif3a

Name:

kinesin family member 3a

RGD ID:

621536

Description:

Enables kinesin binding activity. Involved in positive regulation of axo-dendritic protein transport; positive regulation of establishment or maintenance of cell polarity regulating cell shape; and positive regulation of receptor-mediated endocytosis. Located in axon cytoplasm; axoneme; and neuronal cell body. Colocalizes with ribbon synapse. Orthologous to human KIF3A (kinesin family member 3A); PARTICIPATES IN Hedgehog signaling pathway; insulin responsive facilitative sugar transporter mediated glucose transport pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

kinesin-like protein KIF3A

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	KIF3A (kinesin family member 3A)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Kif3a (kinesin family member 3A)	HGNC	EggNOG, NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Kif3a (kinesin family member 3A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	KIF3A (kinesin family member 3A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	KIF3A (kinesin family member 3A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Kif3a (kinesin family member 3A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	KIF3A (kinesin family member 3A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	KIF3A (kinesin family member 3A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Kif3a (kinesin family member 3A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	KIF3A (kinesin family member 3A)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Mus musculus (house mouse):	Kif3a (kinesin family member 3A)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	kif3a (kinesin family member 3A)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	Klp64D	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER)
Caenorhabditis elegans (roundworm):	klp-20	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	10	37,725,930 - 37,761,183 (+)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	10	37,725,970 - 37,759,191 (+)	Ensembl
Rnor_6.0	10	38,918,705 - 38,953,958 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	38,918,748 - 38,952,785 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	38,700,206 - 38,734,498 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	39,029,351 - 39,062,570 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	10	39,057,446 - 39,068,547 (+)	NCBI
Celera	10	37,070,450 - 37,103,611 (+)	NCBI		Celera
Cytogenetic Map	10	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

asthma (ISO)

bone development disease (ISO)

COVID-19 (ISO)

Craniofacial Abnormalities (ISO)

dysostosis (ISS)

familial adenomatous polyposis 1 (ISO)

gastrointestinal stromal tumor (ISO)

Hereditary Neoplastic Syndromes (ISO)

Neurodevelopmental Disorders (ISO)

polycystic kidney disease (ISS)

polydactyly (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

5-fluorouracil (ISO)

acetamide (EXP)

acetylsalicylic acid (ISO)

aflatoxin M1 (ISO)

ammonium chloride (EXP)

Aroclor 1254 (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

carbon nanotube (ISO)

cocaine (EXP)

crocidolite asbestos (ISO)

cyclophosphamide (ISO)

cyclosporin A (ISO)

diarsenic trioxide (ISO)

doxorubicin (ISO)

ethanol (ISO)

fenvalerate (EXP)

folic acid (ISO)

furan (EXP)

gentamycin (EXP)

hydrogen peroxide (ISO)

indole-3-methanol (EXP)

mercury dichloride (ISO)

N-ethyl-N-nitrosourea (ISO)

paclitaxel (ISO)

paracetamol (ISO)

pirinixic acid (ISO)

quercetin (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium dichromate (EXP)

sunitinib (ISO)

tamoxifen (ISO)

thioacetamide (EXP)

trichostatin A (ISO)

triptonide (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

anterior/posterior pattern specification (ISO)

anterograde axonal transport (IBA)

centriole-centriole cohesion (ISO)

cilium assembly (IBA,ISO)

cilium movement (ISO)

dentate gyrus development (ISO)

determination of left/right symmetry (ISO)

dorsal/ventral neural tube patterning (ISO)

dorsal/ventral pattern formation (ISO)

epidermal stem cell homeostasis (ISO)

epidermis development (ISO)

forebrain development (ISO)

heart development (ISO)

heart looping (ISO)

in utero embryonic development (ISO)

inner ear receptor cell stereocilium organization (ISO)

kidney development (ISO)

microtubule anchoring at centrosome (ISO)

microtubule-based movement (IBA)

motile cilium assembly (ISO)

neural precursor cell proliferation (ISO)

neural tube development (ISO)

non-motile cilium assembly (ISO)

positive regulation of axo-dendritic protein transport (IMP)

positive regulation of epithelial cell proliferation (ISO)

positive regulation of establishment or maintenance of cell polarity regulating cell shape (IMP)

positive regulation of intracellular protein transport (IMP)

positive regulation of receptor-mediated endocytosis (IDA)

protein localization to cell junction (ISO)

protein transport (ISO)

smoothened signaling pathway (ISO)

Cellular Component

axon cytoplasm (IDA)

axoneme (IDA)

centriole (ISO)

centrosome (ISO)

cilium (ISO)

kinesin complex (IBA)

kinesin II complex (ISO)

microtubule (IBA)

microtubule cytoskeleton (ISO)

motile cilium (ISO)

neuron projection (ISO)

neuronal cell body (IDA)

photoreceptor connecting cilium (ISO)

ribbon synapse (IDA)

spindle microtubule (ISO)

Molecular Function

ATP binding (IEA)

ATP hydrolysis activity (IBA)

intraciliary transport particle B binding (ISO)

kinesin binding (IPI)

microtubule binding (IBA,ISO)

microtubule motor activity (IBA,IEA)

protein binding (IPI,ISO)

protein phosphatase binding (ISO)

protein-containing complex binding (IPI)

small GTPase binding (ISO)

spectrin binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

Hedgehog signaling pathway (ISO)

insulin responsive facilitative sugar transporter mediated glucose transport pathway (ISO)

References

References - curated


1.	Bananis E, etal., Mol Biol Cell. 2004 Aug;15(8):3688-97. Epub 2004 Jun 4.
2.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Gu Y and Gu C, PLoS One. 2010 Aug 4;5(8):e11931. doi: 10.1371/journal.pone.0011931.
4.	Lin F, etal., Proc Natl Acad Sci U S A 2003 Apr 29;100(9):5286-91.
5.	Massinen S, etal., PLoS One. 2011;6(6):e20580. doi: 10.1371/journal.pone.0020580. Epub 2011 Jun 16.
6.	MGD data from the GO Consortium
7.	Muresan V, etal., J Neurosci. 1999 Feb 1;19(3):1027-37.
8.	Muresan V, etal., Mol Biol Cell 1998 Mar;9(3):637-52.
9.	NCBI rat LocusLink and RefSeq merged data July 26, 2002
10.	Nishimura T, etal., Nat Cell Biol. 2004 Apr;6(4):328-34. Epub 2004 Mar 28.
11.	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
12.	RGD automated data pipeline
13.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
14.	RGD automated import pipeline for gene-chemical interactions
15.	Satoh T Small GTPases. 2014;5:e28102. doi: 10.4161/sgtp.28102. Epub 2014 Mar 10.
16.	Shi SH, etal., Curr Biol. 2004 Nov 23;14(22):2025-32.
17.	Sotelo-Silveira JR, etal., J Neurobiol. 2004 Aug;60(2):187-96.
18.	Spiwoks-Becker I, etal., Cell Tissue Res. 2008 Aug;333(2):185-95. doi: 10.1007/s00441-008-0627-3. Epub 2008 Jun 4.

Additional References at PubMed

PMID:8889548	PMID:10220415	PMID:10330409	PMID:12821668	PMID:15067314	PMID:15755804	PMID:16298999	PMID:17360631	PMID:17825299	PMID:18066062	PMID:18297065	PMID:18590716
PMID:18729223	PMID:19056867	PMID:19208653	PMID:19286674	PMID:19384852	PMID:19684112	PMID:21209331	PMID:21429982	PMID:21670265	PMID:21703454	PMID:23376485	PMID:23386061
PMID:23704327	PMID:24338362	PMID:26021297	PMID:28291836	PMID:29891944

Genomics

Comparative Map Data

Kif3a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	10	37,725,930 - 37,761,183 (+)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	10	37,725,970 - 37,759,191 (+)	Ensembl
Rnor_6.0	10	38,918,705 - 38,953,958 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	38,918,748 - 38,952,785 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	38,700,206 - 38,734,498 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	39,029,351 - 39,062,570 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	10	39,057,446 - 39,068,547 (+)	NCBI
Celera	10	37,070,450 - 37,103,611 (+)	NCBI		Celera
Cytogenetic Map	10	q22	NCBI

KIF3A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	5	132,692,628 - 132,737,638 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	5	132,688,808 - 132,737,563 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	5	132,028,323 - 132,073,238 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	132,056,222 - 132,101,164 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	5	132,059,220 - 132,101,163	NCBI
Celera	5	128,158,460 - 128,203,363 (-)	NCBI
Cytogenetic Map	5	q31.1	NCBI
HuRef	5	127,220,971 - 127,265,873 (-)	NCBI		HuRef
CHM1_1	5	131,461,606 - 131,506,536 (-)	NCBI		CHM1_1

Kif3a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	53,456,531 - 53,495,075 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	11	53,458,206 - 53,492,794 (+)	Ensembl
GRCm38	11	53,565,701 - 53,604,248 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	53,567,379 - 53,601,967 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	53,380,881 - 53,417,746 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	11	53,410,826 - 53,445,377 (+)	NCBI			mm8
Celera	11	58,146,946 - 58,183,772 (+)	NCBI		Celera
Cytogenetic Map	11	B1.3	NCBI
cM Map	11	31.97	NCBI

Kif3a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955408	4,069,639 - 4,115,998 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955408	4,072,823 - 4,115,975 (-)	NCBI	ChiLan1.0	ChiLan1.0

KIF3A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	5	134,268,505 - 134,315,431 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	134,274,352 - 134,315,431 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	5	128,112,636 - 128,154,443 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

KIF3A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	20,988,516 - 21,044,151 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	20,928,655 - 21,044,090 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	19,790,183 - 19,845,775 (-)	NCBI
ROS_Cfam_1.0	11	21,774,466 - 21,830,159 (-)	NCBI
UMICH_Zoey_3.1	11	20,492,965 - 20,548,637 (-)	NCBI
UNSW_CanFamBas_1.0	11	20,340,508 - 20,396,333 (-)	NCBI
UU_Cfam_GSD_1.0	11	20,983,018 - 21,038,700 (-)	NCBI

Kif3a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	115,458,121 - 115,499,788 (+)	NCBI
SpeTri2.0	NW_004936647	2,461,017 - 2,502,550 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

KIF3A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	134,932,615 - 135,069,351 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	134,932,339 - 135,069,408 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	140,400,867 - 140,537,919 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

KIF3A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	35,496,770 - 35,554,536 (-)	NCBI	ChlSab1.1		chlSab2
ChlSab1.1 Ensembl	23	35,514,130 - 35,551,472 (-)	Ensembl	ChlSab1.1		chlSab2
Vero_WHO_p1.0	NW_023666034	42,387,830 - 42,436,606 (+)	NCBI	Vero_WHO_p1.0

Kif3a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624733	39,354,360 - 39,406,574 (+)	NCBI	HetGla_female_1.0		hetGla2

Position Markers

D10Rat168

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	37,729,374 - 37,729,617 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	38,922,153 - 38,922,395	NCBI	Rnor6.0
Rnor_5.0	10	38,703,881 - 38,704,123	UniSTS	Rnor5.0
RGSC_v3.4	10	39,032,755 - 39,032,998	RGD	RGSC3.4
RGSC_v3.4	10	39,032,756 - 39,032,998	UniSTS	RGSC3.4
RGSC_v3.1	10	39,041,271 - 39,041,661	RGD
Celera	10	37,073,855 - 37,074,097	UniSTS
SHRSP x BN Map	10	36.2799	RGD
SHRSP x BN Map	10	36.2799	UniSTS
Cytogenetic Map	10	q22	UniSTS

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
634327	Hc4	Hypercalciuria QTL 4	2.4		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	10	1	38328221	Rat
7411611	Foco17	Food consumption QTL 17	18.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	10	1	42315980	Rat
70223	Bp57	Blood pressure QTL 57	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	1	80676123	Rat
10401803	Kidm50	Kidney mass QTL 50			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	10	418344	45418344	Rat
631554	Bp133	Blood pressure QTL 133		0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	743364	63851208	Rat
2313064	Bmd71	Bone mineral density QTL 71	0.9	0.0001	tibia mineral mass (VT:1000283)	cortical volumetric bone mineral density (CMO:0001730)	10	5387014	50387014	Rat
2313066	Bss63	Bone structure and strength QTL 63	1.4	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	10	5387014	50387014	Rat
2313081	Bss64	Bone structure and strength QTL 64	1.3	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	10	5387014	50387014	Rat
2313095	Bss62	Bone structure and strength QTL 62	1.5	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	5387014	50387014	Rat
2313104	Bss61	Bone structure and strength QTL 61	0.9	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	10	5387014	50387014	Rat
2298544	Neuinf9	Neuroinflammation QTL 9	4.6		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	10	5801990	62146030	Rat
8662860	Vetf10	Vascular elastic tissue fragility QTL 10			artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	10	6154182	73453136	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6357896	96121100	Rat
1578761	Stresp21	Stress response QTL 21	3.3		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	6375746	51375746	Rat
2303118	Mamtr7	Mammary tumor resistance QTL 7		0.003	mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	10	9658275	104670812	Rat
9590310	Scort19	Serum corticosterone level QTL 19	6.3	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	11474010	56474010	Rat
9590268	Scort13	Serum corticosterone level QTL 13	3.26	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	11474010	56474010	Rat
9589136	Insul27	Insulin level QTL 27	10.46	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	10	11474010	56474010	Rat
2301967	Cm73	Cardiac mass QTL 73	4.55		heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	14487011	89062041	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14487011	104060283	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14487011	107057807	Rat
1354587	Kidm21	Kidney mass QTL 21	3.3		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	10	15028513	60430477	Rat
631564	Apr3	Acute phase response QTL 3	3.9		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	10	15275955	60275955	Rat
6893350	Bw99	Body weight QTL 99	0.87	0.16	body mass (VT:0001259)	body weight (CMO:0000012)	1	15906665	60906665	Rat
6893352	Bw100	Body weight QTL 100	0.33	0.6	body mass (VT:0001259)	body weight (CMO:0000012)	1	15906665	60906665	Rat
631532	Cm50	Cardiac mass QTL 50	6.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	10	17907113	51786432	Rat
1598852	Anxrr19	Anxiety related response QTL 19	5.07		body movement coordination trait (VT:0005424)	number of rearing movements in an experimental apparatus (CMO:0001752)	10	18167841	63167841	Rat
2313055	Bw96	Body weight QTL 96	3.6	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	10	19606483	64606483	Rat
2313087	Bmd80	Bone mineral density QTL 80	3.2	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	10	19606483	64606483	Rat
1554317	Bmd4	Bone mineral density QTL 4	9.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	19816042	99406971	Rat
1581497	Esta1	Estrogen-induced thymic atrophy QTL 1			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	21329805	61345413	Rat
724556	Pur2	Proteinuria QTL 2	5.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	22427500	90627625	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
70224	Eae3	Experimental allergic encephalomyelitis QTL 3	4.1		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	10	26521957	61345413	Rat
1298069	Bp168	Blood pressure QTL 168	5.5		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	10	26521957	98003205	Rat
631542	Bp82	Blood pressure QTL 82	6.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	26521957	98952741	Rat
2300171	Bmd58	Bone mineral density QTL 58	4.9	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	26944628	71944628	Rat
10402859	Bp381	Blood pressure QTL 381		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	27606468	72606468	Rat
2292441	Bp308	Blood pressure QTL 308			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	27606468	72606468	Rat
724527	Bp148	Blood pressure QTL 148		0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	28453136	73453136	Rat
1600371	Mcs21	Mammary carcinoma susceptibility QTL 21	3		mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	10	28875650	52200160	Rat
1331762	Rf40	Renal function QTL 40	3.873		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	10	29299504	64155584	Rat
1331791	Cm31	Cardiac mass QTL 31	3.84606		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	29299504	107211142	Rat
631557	Bp136	Blood pressure QTL 136		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	30632053	75632053	Rat
1576311	Pia26	Pristane induced arthritis QTL 26			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	31224026	75632053	Rat
1578779	Tcas10	Tongue tumor susceptibility QTL 10	3.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	10	31297439	76297439	Rat
1576319	Cia29	Collagen induced arthritis QTL 29			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	33973921	78973921	Rat
61332	Eau3	Experimental allergic uveoretinitis QTL 3		0.004	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	10	34490559	45579777	Rat
1354614	Hpcl1	Hepatic cholesterol level QTL 1	3.3		liver cholesterol amount (VT:0010498)	liver cholesterol level (CMO:0001597)	10	35392267	51793994	Rat
1358897	Stresp6	Stress response QTL 6	4.17	0.022	blood norepinephrine amount (VT:0005663)	plasma norepinephrine level (CMO:0001010)	10	35392267	64155584	Rat
61441	Btemp1	Thermal response to stress QTL 1	4		body temperature trait (VT:0005535)	core body temperature (CMO:0001036)	10	35392457	63642539	Rat
2317042	Aia20	Adjuvant induced arthritis QTL 20	3.38		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	10	37565079	82565079	Rat
2317043	Aia7	Adjuvant induced arthritis QTL 7	3.82		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	10	37565079	82565079	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	7
Count of miRNA genes:	5
Interacting mature miRNAs:	7
Transcripts:	ENSRNOT00000009999
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		20	4	4		4			74	20	40	10
Low	3	23	53	37	19	37	8	11		15	1	1	8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_053377	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006246347	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006246351	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597556	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597557	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597558	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086966	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086967	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC107611	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF155825	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AM180763	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AW530197	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB616593	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CR474808	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CV116151	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000219	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000009999 ⟹ ENSRNOP00000009999

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	37,725,970 - 37,759,191 (+)	Ensembl
Rnor_6.0 Ensembl	10	38,918,748 - 38,951,967 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000077569 ⟹ ENSRNOP00000069057

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	37,726,277 - 37,759,191 (+)	Ensembl
Rnor_6.0 Ensembl	10	38,919,167 - 38,952,785 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000096824 ⟹ ENSRNOP00000085263

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	37,729,166 - 37,757,761 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000110159 ⟹ ENSRNOP00000096291

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	37,728,722 - 37,757,761 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000111035 ⟹ ENSRNOP00000096108

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	37,725,970 - 37,759,188 (+)	Ensembl

RefSeq Acc Id:

NM_053377 ⟹ NP_445829

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	37,725,970 - 37,759,191 (+)	NCBI
Rnor_6.0	10	38,918,748 - 38,951,967 (+)	NCBI
Rnor_5.0	10	38,700,206 - 38,734,498 (+)	NCBI
RGSC_v3.4	10	39,029,351 - 39,062,570 (+)	RGD
Celera	10	37,070,450 - 37,103,611 (+)	RGD

Sequence:

show sequence

GCCGTAGTCTCCAGAGCGCTAAGGTGTTTCGGTCGCTTGCGGCCAGCCTCGCCTCCAAACCCGG
TGTTGTTGGACTGCATCCGGAGCGGGGACATTGGCGGACCACCAGACGCGGCCACCATGCCGAT
CAATAAATCAGAGAAGCCAGAAAGCTGCGACAACGTGAAGGTAGTTGTCAGGTGCCGACCTCTC
AACGAGAGAGAGAAATCAATGTGCTACAGACAGGCCGTCAGCGTGGATGAAATGCGGGGGACTA
TCACCGTCCATAAGACCGACTCTTCCAACGAACCTCCGAAGACATTTACTTTCGATACTGTTTT
TGGACCAGAGAGTAAACAACTTGATGTATATAACTTGACTGCAAGACCAATTATTGATTCTGTC
CTGGAAGGCTACAATGGGACCATTTTTGCATATGGACAGACTGGGACAGGCAAGACTTTCACCA
TGGAAGGTGTTCGAGCAGTGCCGGGGCTCAGAGGGGTCATCCCCAACTCATTTGCTCACATATT
TGGTCATATCGCAAAAGCAGAGGGCGACACAAGGTTTCTGGTTCGAGTGTCATACTTAGAGATA
TATAATGAAGAAGTCCGAGACCTTCTGGGTAAAGATCAGACACAGAGGTTGGAGGTTAAAGAAA
GGCCTGACGTGGGAGTATATATCAAAGATTTATCAGCATATGTAGTCAACAATGCTGACGACAT
GGATAGAATCATGACTCTGGGCCACAAAAACCGTTCCGTTGGTGCGACCAATATGAACGAGCAC
AGTTCCCGATCGCACGCCATCTTCACAATTACAATCGAGTGCAGCGAGAAAGGCGTGGATGGAA
ACATGCACGTCAGGATGGGGAAGCTCCACCTTGTGGATCTTGCTGGGTCAGAAAGACAAGCAAA
AACTGGAGCCACAGGGCAGCGCCTCAAAGAAGCTACCAAAATCAACCTTTCATTGTCTACCTTG
GGCAATGTCATTTCTGCCTTGGTGGATGGAAAAAGCACTCATGTGCCGTATCGGAACTCTAAAC
TGACACGTCTCCTGCAGGATTCCTTAGGAGGGAACTCAAAAACCATGATGTGTGCAAATATTGG
GCCAGCAGATTATAATTATGATGAAACCATCAGTACCTTGCGGTATGCCAACCGCGCCAAGAAC
ATTAAAAACAAAGCTAGAATTAACGAAGACCCAAAGGACGCTCTGCTTCGCCAGTTTCAGAAAG
AAATAGAAGAGCTGAAGAAAAAGCTTGAGGAAGGGGAAGAAGTGTCAGGCTCTGACATCAGTGG
GTCAGAGGAGGATGACAACGAGGAGGGTGAACTTGGAGAAGATGGAGAAAAAAGGAAAAAGAGA
AGGGACCAAGCAGGTAAAAAGAAAGTTTCCCCAGATAAGATGATGGAAATGCAAGCGAAAATTG
ATGAGGAGAGAAAAGCACTGGAAACCAAACTCGACATGGAGGAAGAAGAAAGAAACAAGGCTAG
AGCTGAGCTGGAGCGACGGGAGAAGGACCTTCTGAAAGCCCAACAAGAGCATCAGTCTTTGCTG
GAAAAACTGTCTGCGCTGGAGAAGAAGGTGATTGTCGGTGGTGTGGACTTGTTGGCCAAAGCTG
AGGAGCAAGAGAAGCTTCTCGAGGAGTCCAATATGGAGCTGGAGGAGCGGAGGAAAAGAGCTGA
GCAACTTCGGAAAGAACTAGAGGAAAAAGAGCAAGAACGCTTGGACATCGAGGAAAAATATACC
AGTCTGCAAGAGGAGGCACAAGGAAAGACCAAGAAATTAAAGAAAGTCTGGACCATGCTGATGG
CTGCAAAGTCAGAGATGGCTGATCTCCAGCAAGAGCATCAGAGGGAAATTGAAGGCCTCCTGGA
GAACATTCGGCAGCTCAGCCGTGAGCTCCGACTTCAGATGCTCATCATTGATAACTTCATACCT
CAGGACTACCAGGAAATGATTGAAAACTACGTCCACTGGAATGAAGACATAGGAGAATGGCAGC
TGAAATGTGTGGCCTACACAGGAAATAACATGAGGAAACAAACTCCAGTCCCTGACAAGAAGGA
GAGAGACCCATTTGAAGTAGACCTTTCCCACGTGTACCTCGCCTATACAGAGGAGAGTTTGCGT
CAGTCTCTGATGAAGTTAGAAAGGCCACGGACCTCCAAGGGAAAGGCCAGGCCAAAGACCGGTA
GAAGAAAGCGTTCTGCAAAGCCTGAGACCGTAATTGATTCTTTACTTCAGTAAATGTTACAGAA
TTAAAGTTACAATAATAATAATAAAAAGTGATATTCTCA

hide sequence

RefSeq Acc Id:

XM_006246347 ⟹ XP_006246409

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	37,725,937 - 37,761,180 (+)	NCBI
Rnor_6.0	10	38,918,705 - 38,953,958 (+)	NCBI
Rnor_5.0	10	38,700,206 - 38,734,498 (+)	NCBI

Sequence:

show sequence

GGCGGGGCGAGCTCAGAGTGCGCCTGCGCACTGCGGTTTGTGAGCCGTAGTCTCCAGAGCGCTA
AGGTGTTTCGGTCGCTTGCGGCCAGCCTCGCCTCCAAACCCGGTGTTGTTGGACTGCATCCGGA
GCGGGGACATTGGCGGACCACCAGACGCGGCCACCATGCCGATCAATAAATCAGAGAAGCCAGA
AAGCTGCGACAACGTGAAGGTAGTTGTCAGGTGCCGACCTCTCAACGAGAGAGAGAAATCAATG
TGCTACAGACAGGCCGTCAGCGTGGATGAAATGCGGGGGACTATCACCGTCCATAAGACCGACT
CTTCCAACGAACCTCCGAAGACATTTACTTTCGATACTGTTTTTGGACCAGAGAGTAAACAACT
TGATGTATATAACTTGACTGCAAGACCAATTATTGATTCTGTCCTGGAAGGCTACAATGGGACC
ATTTTTGCATATGGACAGACTGGGACAGGCAAGACTTTCACCATGGAAGGTGTTCGAGCAGTGC
CGGGGCTCAGAGGGGTCATCCCCAACTCATTTGCTCACATATTTGGTCATATCGCAAAAGCAGA
GGGCGACACAAGGTTTCTGGTTCGAGTGTCATACTTAGAGATATATAATGAAGAAGTCCGAGAC
CTTCTGGGTAAAGATCAGACACAGAGGTTGGAGGTTAAAGAAAGGCCTGACGTGGGAGTATATA
TCAAAGATTTATCAGCATATGTAGTCAACAATGCTGACGACATGGATAGAATCATGACTCTGGG
CCACAAAAACCGTTCCGTTGGTGCGACCAATATGAACGAGCACAGTTCCCGATCGCACGCCATC
TTCACAATTACAATCGAGTGCAGCGAGAAAGGCGTGGATGGAAACATGCACGTCAGGATGGGGA
AGCTCCACCTTGTGGATCTTGCTGGGTCAGAAAGACAAGCAAAAACTGGAGCCACAGGGCAGCG
CCTCAAAGAAGCTACCAAAATCAACCTTTCATTGTCTACCTTGGGCAATGTCATTTCTGCCTTG
GTGGATGGAAAAAGCACTCATGTGCCGTATCGGAACTCTAAACTGACACGTCTCCTGCAGGATT
CCTTAGGAGGGAACTCAAAAACCATGATGTGTGCAAATATTGGGCCAGCAGATTATAATTATGA
TGAAACCATCAGTACCTTGCGGTATGCCAACCGCGCCAAGAACATTAAAAACAAAGCTAGAATT
AACGAAGACCCAAAGGACGCTCTGCTTCGCCAGTTTCAGAAAGAAATAGAAGAGCTGAAGAAAA
AGCTTGAGGAAGGGGAAGAAGTGTCAGGCTCTGACATCAGTGGGTCAGAGGAGGATGACAACGA
GGAGGGTGAACTTGGAGAAGATGGAGAAAAAAGGAAAAAGAGAAGGGGCAGTAGCAGCAGCAGT
AGCTCAGACTCCACATGTTCTGTCATAGAGAAGCCCCTGGATGAGTTCTTGCCTCACCAAGCAG
GTAAAAAGAAAGTTTCCCCAGATAAGATGATGGAAATGCAAGCGAAAATTGATGAGGAGAGAAA
AGCACTGGAAACCAAACTCGACATGGAGGAAGAAGAAAGAAACAAGGCTAGAGCTGAGCTGGAG
CGACGGGAGAAGGACCTTCTGAAAGCCCAACAAGAGCATCAGTCTTTGCTGGAAAAACTGTCTG
CGCTGGAGAAGAAGGTGATTGTCGGTGGTGTGGACTTGTTGGCCAAAGCTGAGGAGCAAGAGAA
GCTTCTCGAGGAGTCCAATATGGAGCTGGAGGAGCGGAGGAAAAGAGCTGAGCAACTTCGGAAA
GAACTAGAGGAAAAAGAGCAAGAACGCTTGGACATCGAGGAAAAATATACCAGTCTGCAAGAGG
AGGCACAAGGAAAGACCAAGAAATTAAAGAAAGTCTGGACCATGCTGATGGCTGCAAAGTCAGA
GATGGCTGATCTCCAGCAAGAGCATCAGAGGGAAATTGAAGGCCTCCTGGAGAACATTCGGCAG
CTCAGCCGTGAGCTCCGACTTCAGATGCTCATCATTGATAACTTCATACCTCAGGACTACCAGG
AAATGATTGAAAACTACGTCCACTGGAATGAAGACATAGGAGAATGGCAGCTGAAATGTGTGGC
CTACACAGGAAATAACATGAGGAAACAAACTCCAGTCCCTGACAAGAAGGAGAGAGACCCATTT
GAAGTAGACCTTTCCCACGTGTACCTCGCCTATACAGAGGAGAGTTTGCGTCAGTCTCTGATGA
AGTTAGAAAGGCCACGGACCTCCAAGGGAAAGGCCAGGCCAAAGACCGGTAGAAGAAAGCGTTC
TGCAAAGCCTGAGACCGTAATTGATTCTTTACTTCAGTAAATGTTACAGAATTAAAGTTACAAT
AATAATAATAAAAAGTGATATTCTCATGCCTGGAGAGAAGTCCTTAATTAAGACACGGAGGACA
CCTGTATGTTCACATAATAGAAGCTGTCAATGACGGAGAGAGACTGGAATAGCAGTTTTCCTAA
CATTTTTTAGACTCTTTAGTTTCTGTAACATGTAAGTGTGCAGCTCATGACCGCTGGGCATGGT
GCACTGTCTGTCACACGCTCTGCAGGCAGTAAGGGCACTGTGGTTGTTCGTGACTGTGCGTCTC
TTAGCTCTGTATTCAACGCCTGTGGCTCTAGACAAGCAGAGTCTCAGAACAGAACCCAGTCTGT
CTTGTTTGCACCCAGCATATAGCAGATCTCCTTGTCCTGTGTCCTGTGCTGGGCTGCTCATCTG
AGCAGAGACTTGGTCCTACACCTGCCTGGCCTGCCTAAGTGCAGCCCAACTTTATAGGAATATT
AACTGCATCTAAGTGTGCAGTGACTGCCTTTATTGATCTCCGGTGGGAAATTGTAAAATCTGAT
AGCTTTTCAGGTTTACATTTTAATGCAGTTAAATACAGTTTGATCGTGCGCTTCACCTGTCCAC
CCGCCACTTCTGTCGCTCTGACTCCACACTCAGCCTTTGTTGTTACTGAGTTGACCTCCCACTT
CTCCTGAAGCCAGGAGGAGCTATTTACCTTTGTCATACACACATTCTAAAAAATTCCCCTGGAC
ATACAGCTTGCAGGCACTCCCCATCTGCATTTTAAGTTTGATGGAAATAACTATAAAAATCGAG
ACCAGACTCACTTTTCAGAAAATGAAGCAAAGTCAAAAATGCCTTTTAATTTTCATATATATAT
ATATATATATATATATATATATATATTCTCTTCTGATTTCTTGTATTGATTAATCCAGTTAGAT
AGTATTCTTCTACACAAAAAAGTTACGTCCATTGTATAGTGAGATAAGTTATAGTAAATAGAAG
GTTTTGGTTTCGTCGTTTACTTATACAAATGTTTTGAAGGTCATGAGCTTCCTAAACCTAAGTT
TGGAATTATACAATCCACTCTGAGCTATTTATTGCAAAAGTTTTGAGACTTCCCAAGTTAGGAT
TAATCAGATTGCTACGATTTTAACAAGTTTGGATAAACACTGATTTATAATTACATTGCCCTGT
GTGTCTGTGGGTGGCTCAACAGAGAGGTGCAGCCCTGGTGAGGTGGAGGAAGGCATGGCGGTTC
ATTTTCAGCTTTCTTGAATTGGAGCACTGAGTATCCTGTATGTACCGGGTGCTGGTGTGAGCAT
GGCCACTGTGGCAGCATTTTCAAGACATTTTCAAGGTGTGGCCTGCTGTGACTCGGTGAGCCTT
GTGTATCGCTTGCAAAGGCTCAAGTGAGCCGAGTGTCTTGGTGGCGTCAGATTTCGCAGCGCAG
TGATGTAAGTTTAACTGTTAGTAATTAGAAGACTCTGTGCGCCTTCGTCTTAAAGTCCACGTTT
CCATTATTTAGCAGCTCAGCTGCCCCAGAAGGAATAGCTGCTGTAAATTAGGCTAAAGCACGAG
AGAAATTAAATCTAGTTAAAGTCCATCACAGTAACAAAAATAACTCCATAAACTAAAAATATTA
GAAACTTGACTAGGCATCTTGACTTGGTAATTTTGTTTGCTTGCTTGTTTGTTTTGTTGAAACA
GGGTCTCTCTGTGTTAGCCCAGGCTGGCCTGGACTCCTGATCCTTCTGCCTCAGCCTCAGTTGC
TGGAATTGTGGATGTATGGCATCATGTCAAGTCACGCACTTATTAAAGCACTGATGTTAAAACT
CCAATCAGGCGGACAGTGTTCACTTCTGAAAACCAAACGAAAGTCTGGCCAGGTGGGGAGGTCT
GCTGCAGATGGCTAGGACGCCCACTCTGTCACAGCCGTGCTGTGGCTGCTTCTCCTGCACTGTG
TCCTCATCTACAGTGGAATAATTTGTATTTTCAGTGTTAATTTCATGAATGGATAGACTTGCTT
GCTTAATGTTTAAAATAAATGTACAGATTTTAA

hide sequence

RefSeq Acc Id:

XM_006246351 ⟹ XP_006246413

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	37,725,937 - 37,759,191 (+)	NCBI
Rnor_6.0	10	38,918,706 - 38,953,958 (+)	NCBI
Rnor_5.0	10	38,700,206 - 38,734,498 (+)	NCBI

Sequence:

show sequence

GCGGGGCGAGCTCAGAGTGCGCCTGCGCACTGCGGTTTGTGAGCCGTAGTCTCCAGAGCGCTAA
GGTGTTTCGGTCGCTTGCGGCCAGCCTCGCCTCCAAACCCGGTGTTGTTGGACTGCATCCGGAG
CGGGGACATTGGCGGACCACCAGACGCGGCCACCATGCCGATCAATAAATCAGAGAAGCCAGAA
AGCTGCGACAACGTGAAGGTAGTTGTCAGGTGCCGACCTCTCAACGAGAGAGAGAAATCAATGT
GCTACAGACAGGCCGTCAGCGTGGATGAAATGCGGGGGACTATCACCGTCCATAAGACCGACTC
TTCCAACGAACCTCCGAAGACATTTACTTTCGATACTGTTTTTGGACCAGAGAGTAAACAACTT
GATGTATATAACTTGACTGCAAGACCAATTATTGATTCTGTCCTGGAAGGCTACAATGGGACCA
TTTTTGCATATGGACAGACTGGGACAGGCAAGACTTTCACCATGGAAGGTGTTCGAGCAGTGCC
GGGGCTCAGAGGGGTCATCCCCAACTCATTTGCTCACATATTTGGTCATATCGCAAAAGCAGAG
GGCGACACAAGGTTTCTGGTTCGAGTGTCATACTTAGAGATATATAATGAAGAAGTCCGAGACC
TTCTGGGTAAAGATCAGACACAGAGGTTGGAGGTTAAAGAAAGGCCTGACGTGGGAGTATATAT
CAAAGATTTATCAGCATATGTAGTCAACAATGCTGACGACATGGATAGAATCATGACTCTGGGC
CACAAAAACCGTTCCGTTGGTGCGACCAATATGAACGAGCACAGTTCCCGATCGCACGCCATCT
TCACAATTACAATCGAGTGCAGCGAGAAAGGCGTGGATGGAAACATGCACGTCAGGATGGGGAA
GCTCCACCTTGTGGATCTTGCTGGGTCAGAAAGACAAGCAAAAACTGGAGCCACAGGGCAGCGC
CTCAAAGAAGCTACCAAAATCAACCTTTCATTGTCTACCTTGGGCAATGTCATTTCTGCCTTGG
TGGATGGAAAAAGCACTCATGTGCCGTATCGGAACTCTAAACTGACACGTCTCCTGCAGGATTC
CTTAGGAGGGAACTCAAAAACCATGATGTGTGCAAATATTGGGCCAGCAGATTATAATTATGAT
GAAACCATCAGTACCTTGCGGTATGCCAACCGCGCCAAGAACATTAAAAACAAAGCTAGAATTA
ACGAAGACCCAAAGGACGCTCTGCTTCGCCAGTTTCAGAAAGAAATAGAAGAGCTGAAGAAAAA
GCTTGAGGAAGGGGAAGAAGTGTCAGGCTCTGACATCAGTGGGTCAGAGGAGGATGACAACGAG
GAGGGTGAACTTGGAGAAGATGGAGAAAAAAGGAAAAAGAGAAGGGGTAAAAAGAAAGTTTCCC
CAGATAAGATGATGGAAATGCAAGCGAAAATTGATGAGGAGAGAAAAGCACTGGAAACCAAACT
CGACATGGAGGAAGAAGAAAGAAACAAGGCTAGAGCTGAGCTGGAGCGACGGGAGAAGGACCTT
CTGAAAGCCCAACAAGAGCATCAGTCTTTGCTGGAAAAACTGTCTGCGCTGGAGAAGAAGGTGA
TTGTCGGTGGTGTGGACTTGTTGGCCAAAGCTGAGGAGCAAGAGAAGCTTCTCGAGGAGTCCAA
TATGGAGCTGGAGGAGCGGAGGAAAAGAGCTGAGCAACTTCGGAAAGAACTAGAGGAAAAAGAG
CAAGAACGCTTGGACATCGAGGAAAAATATACCAGTCTGCAAGAGGAGGCACAAGGAAAGACCA
AGAAATTAAAGAAAGTCTGGACCATGCTGATGGCTGCAAAGTCAGAGATGGCTGATCTCCAGCA
AGAGCATCAGAGGGAAATTGAAGGCCTCCTGGAGAACATTCGGCAGCTCAGCCGTGAGCTCCGA
CTTCAGATGCTCATCATTGATAACTTCATACCTCAGGACTACCAGGAAATGATTGAAAACTACG
TCCACTGGAATGAAGACATAGGAGAATGGCAGCTGAAATGTGTGGCCTACACAGGAAATAACAT
GAGGAAACAAACTCCAGTCCCTGACAAGAAGGAGAGAGACCCATTTGAAGTAGACCTTTCCCAC
GTGTACCTCGCCTATACAGAGGAGAGTTTGCGTCAGTCTCTGATGAAGTTAGAAAGGCCACGGA
CCTCCAAGGGAAAGGCCAGGCCAAAGACCGGTAGAAGAAAGCGTTCTGCAAAGCCTGAGACCGT
AATTGATTCTTTACTTCAGTAAATGTTACAGAATTAAAGTTACAATAATAATAATAAAAAGTGA
TATTCTCATGCCTGGAGAGAAGTCCTTAATTAAGACACGGAGGACACCTGTATGTTCACATAAT
AGAAGCTGTCAATGACGGAGAGAGACTGGAATAGCAGTTTTCCTAACATTTTTTAGACTCTTTA
GTTTCTGTAACATGTAAGTGTGCAGCTCATGACCGCTGGGCATGGTGCACTGTCTGTCACACGC
TCTGCAGGCAGTAAGGGCACTGTGGTTGTTCGTGACTGTGCGTCTCTTAGCTCTGTATTCAACG
CCTGTGGCTCTAGACAAGCAGAGTCTCAGAACAGAACCCAGTCTGTCTTGTTTGCACCCAGCAT
ATAGCAGATCTCCTTGTCCTGTGTCCTGTGCTGGGCTGCTCATCTGAGCAGAGACTTGGTCCTA
CACCTGCCTGGCCTGCCTAAGTGCAGCCCAACTTTATAGGAATATTAACTGCATCTAAGTGTGC
AGTGACTGCCTTTATTGATCTCCGGTGGGAAATTGTAAAATCTGATAGCTTTTCAGGTTTACAT
TTTAATGCAGTTAAATACAGTTTGATCGTGCGCTTCACCTGTCCACCCGCCACTTCTGTCGCTC
TGACTCCACACTCAGCCTTTGTTGTTACTGAGTTGACCTCCCACTTCTCCTGAAGCCAGGAGGA
GCTATTTACCTTTGTCATACACACATTCTAAAAAATTCCCCTGGACATACAGCTTGCAGGCACT
CCCCATCTGCATTTTAAGTTTGATGGAAATAACTATAAAAATCGAGACCAGACTCACTTTTCAG
AAAATGAAGCAAAGTCAAAAATGCCTTTTAATTTTCATATATATATATATATATATATATATAT
ATATATATTCTCTTCTGATTTCTTGTATTGATTAATCCAGTTAGATAGTATTCTTCTACACAAA
AAAGTTACGTCCATTGTATAGTGAGATAAGTTATAGTAAATAGAAGGTTTTGGTTTCGTCGTTT
ACTTATACAAATGTTTTGAAGGTCATGAGCTTCCTAAACCTAAGTTTGGAATTATACAATCCAC
TCTGAGCTATTTATTGCAAAAGTTTTGAGACTTCCCAAGTTAGGATTAATCAGATTGCTACGAT
TTTAACAAGTTTGGATAAACACTGATTTATAATTACATTGCCCTGTGTGTCTGTGGGTGGCTCA
ACAGAGAGGTGCAGCCCTGGTGAGGTGGAGGAAGGCATGGCGGTTCATTTTCAGCTTTCTTGAA
TTGGAGCACTGAGTATCCTGTATGTACCGGGTGCTGGTGTGAGCATGGCCACTGTGGCAGCATT
TTCAAGACATTTTCAAGGTGTGGCCTGCTGTGACTCGGTGAGCCTTGTGTATCGCTTGCAAAGG
CTCAAGTGAGCCGAGTGTCTTGGTGGCGTCAGATTTCGCAGCGCAGTGATGTAAGTTTAACTGT
TAGTAATTAGAAGACTCTGTGCGCCTTCGTCTTAAAGTCCACGTTTCCATTATTTAGCAGCTCA
GCTGCCCCAGAAGGAATAGCTGCTGTAAATTAGGCTAAAGCACGAGAGAAATTAAATCTAGTTA
AAGTCCATCACAGTAACAAAAATAACTCCATAAACTAAAAATATTAGAAACTTGACTAGGCATC
TTGACTTGGTAATTTTGTTTGCTTGCTTGTTTGTTTTGTTGAAACAGGGTCTCTCTGTGTTAGC
CCAGGCTGGCCTGGACTCCTGATCCTTCTGCCTCAGCCTCAGTTGCTGGAATTGTGGATGTATG
GCATCATGTCAAGTCACGCACTTATTAAAGCACTGATGTTAAAACTCCAATCAGGCGGACAGTG
TTCACTTCTGAAAACCAAACGAAAGTCTGGCCAGGTGGGGAGGTCTGCTGCAGATGGCTAGGAC
GCCCACTCTGTCACAGCCGTGCTGTGGCTGCTTCTCCTGCACTGTGTCCTCATCTACAGTGGAA
TAATTTGTATTTTCAGTGTTAATTTCATGAATGGATAGACTTGCTTGCTTAATGTTTAAAATAA
ATGTACAGATTTTAA

hide sequence

RefSeq Acc Id:

XM_017597556 ⟹ XP_017453045

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	37,726,318 - 37,759,141 (+)	NCBI
Rnor_6.0	10	38,919,098 - 38,953,958 (+)	NCBI

Sequence:

show sequence

GCCAGGCCTGCGCAGCCGGACAGAAAAAGCACCTCGCGGCCAGCAGGGACTTGGTGGCTGCGCG
CGGCCACCAGGGTCCTGCGGATGCTCGCGACCCCAGAGTCCACGCTCTGGCCCCCTACTTCCCC
GGGTATAAACTGTTATTCCGAGCGGACACCTTAGCTTATGATACAGAATGTAACCCGTAGGTGT
CTTTGTGCGAATAAGCGGTGGCGATTTGGTTACCTCCTAGGATTTCACGGATTGTTATCGTGCC
ATAATAAGGGGGTGGTTGTAAATCCCATTGGAGAAGACTTGAGCCATGATCAATAAATCAGAGA
AGCCAGAAAGCTGCGACAACGTGAAGGTAGTTGTCAGGTGCCGACCTCTCAACGAGAGAGAGAA
ATCAATGTGCTACAGACAGGCCGTCAGCGTGGATGAAATGCGGGGGACTATCACCGTCCATAAG
ACCGACTCTTCCAACGAACCTCCGAAGACATTTACTTTCGATACTGTTTTTGGACCAGAGAGTA
AACAACTTGATGTATATAACTTGACTGCAAGACCAATTATTGATTCTGTCCTGGAAGGCTACAA
TGGGACCATTTTTGCATATGGACAGACTGGGACAGGCAAGACTTTCACCATGGAAGGTGTTCGA
GCAGTGCCGGGGCTCAGAGGGGTCATCCCCAACTCATTTGCTCACATATTTGGTCATATCGCAA
AAGCAGAGGGCGACACAAGGTTTCTGGTTCGAGTGTCATACTTAGAGATATATAATGAAGAAGT
CCGAGACCTTCTGGGTAAAGATCAGACACAGAGGTTGGAGGTTAAAGAAAGGCCTGACGTGGGA
GTATATATCAAAGATTTATCAGCATATGTAGTCAACAATGCTGACGACATGGATAGAATCATGA
CTCTGGGCCACAAAAACCGTTCCGTTGGTGCGACCAATATGAACGAGCACAGTTCCCGATCGCA
CGCCATCTTCACAATTACAATCGAGTGCAGCGAGAAAGGCGTGGATGGAAACATGCACGTCAGG
ATGGGGAAGCTCCACCTTGTGGATCTTGCTGGGTCAGAAAGACAAGCAAAAACTGGAGCCACAG
GGCAGCGCCTCAAAGAAGCTACCAAAATCAACCTTTCATTGTCTACCTTGGGCAATGTCATTTC
TGCCTTGGTGGATGGAAAAAGCACTCATGTGCCGTATCGGAACTCTAAACTGACACGTCTCCTG
CAGGATTCCTTAGGAGGGAACTCAAAAACCATGATGTGTGCAAATATTGGGCCAGCAGATTATA
ATTATGATGAAACCATCAGTACCTTGCGGTATGCCAACCGCGCCAAGAACATTAAAAACAAAGC
TAGAATTAACGAAGACCCAAAGGACGCTCTGCTTCGCCAGTTTCAGAAAGAAATAGAAGAGCTG
AAGAAAAAGCTTGAGGAAGGGGAAGAAGTGTCAGGCTCTGACATCAGTGGGTCAGAGGAGGATG
ACAACGAGGAGGGTGAACTTGGAGAAGATGGAGAAAAAAGGAAAAAGAGAAGGGGCAGTAGCAG
CAGCAGTAGCTCAGACTCCACATGTTCTGTCATAGAGAAGCCCCTGGATGAGTTCTTGCCTCAC
CAAGCAGGTAAAAAGAAAGTTTCCCCAGATAAGATGATGGAAATGCAAGCGAAAATTGATGAGG
AGAGAAAAGCACTGGAAACCAAACTCGACATGGAGGAAGAAGAAAGAAACAAGGCTAGAGCTGA
GCTGGAGCGACGGGAGAAGGACCTTCTGAAAGCCCAACAAGAGCATCAGTCTTTGCTGGAAAAA
CTGTCTGCGCTGGAGAAGAAGGTGATTGTCGGTGGTGTGGACTTGTTGGCCAAAGCTGAGGAGC
AAGAGAAGCTTCTCGAGGAGTCCAATATGGAGCTGGAGGAGCGGAGGAAAAGAGCTGAGCAACT
TCGGAAAGAACTAGAGGAAAAAGAGCAAGAACGCTTGGACATCGAGGAAAAATATACCAGTCTG
CAAGAGGAGGCACAAGGAAAGACCAAGAAATTAAAGAAAGTCTGGACCATGCTGATGGCTGCAA
AGTCAGAGATGGCTGATCTCCAGCAAGAGCATCAGAGGGAAATTGAAGGCCTCCTGGAGAACAT
TCGGCAGCTCAGCCGTGAGCTCCGACTTCAGATGCTCATCATTGATAACTTCATACCTCAGGAC
TACCAGGAAATGATTGAAAACTACGTCCACTGGAATGAAGACATAGGAGAATGGCAGCTGAAAT
GTGTGGCCTACACAGGAAATAACATGAGGAAACAAACTCCAGTCCCTGACAAGAAGGAGAGAGA
CCCATTTGAAGTAGACCTTTCCCACGTGTACCTCGCCTATACAGAGGAGAGTTTGCGTCAGTCT
CTGATGAAGTTAGAAAGGCCACGGACCTCCAAGGGAAAGGCCAGGCCAAAGACCGGTAGAAGAA
AGCGTTCTGCAAAGCCTGAGACCGTAATTGATTCTTTACTTCAGTAAATGTTACAGAATTAAAG
TTACAATAATAATAATAAAAAGTGATATTCTCATGCCTGGAGAGAAGTCCTTAATTAAGACACG
GAGGACACCTGTATGTTCACATAATAGAAGCTGTCAATGACGGAGAGAGACTGGAATAGCAGTT
TTCCTAACATTTTTTAGACTCTTTAGTTTCTGTAACATGTAAGTGTGCAGCTCATGACCGCTGG
GCATGGTGCACTGTCTGTCACACGCTCTGCAGGCAGTAAGGGCACTGTGGTTGTTCGTGACTGT
GCGTCTCTTAGCTCTGTATTCAACGCCTGTGGCTCTAGACAAGCAGAGTCTCAGAACAGAACCC
AGTCTGTCTTGTTTGCACCCAGCATATAGCAGATCTCCTTGTCCTGTGTCCTGTGCTGGGCTGC
TCATCTGAGCAGAGACTTGGTCCTACACCTGCCTGGCCTGCCTAAGTGCAGCCCAACTTTATAG
GAATATTAACTGCATCTAAGTGTGCAGTGACTGCCTTTATTGATCTCCGGTGGGAAATTGTAAA
ATCTGATAGCTTTTCAGGTTTACATTTTAATGCAGTTAAATACAGTTTGATCGTGCGCTTCACC
TGTCCACCCGCCACTTCTGTCGCTCTGACTCCACACTCAGCCTTTGTTGTTACTGAGTTGACCT
CCCACTTCTCCTGAAGCCAGGAGGAGCTATTTACCTTTGTCATACACACATTCTAAAAAATTCC
CCTGGACATACAGCTTGCAGGCACTCCCCATCTGCATTTTAAGTTTGATGGAAATAACTATAAA
AATCGAGACCAGACTCACTTTTCAGAAAATGAAGCAAAGTCAAAAATGCCTTTTAATTTTCATA
TATATATATATATATATATATATATATATATATTCTCTTCTGATTTCTTGTATTGATTAATCCA
GTTAGATAGTATTCTTCTACACAAAAAAGTTACGTCCATTGTATAGTGAGATAAGTTATAGTAA
ATAGAAGGTTTTGGTTTCGTCGTTTACTTATACAAATGTTTTGAAGGTCATGAGCTTCCTAAAC
CTAAGTTTGGAATTATACAATCCACTCTGAGCTATTTATTGCAAAAGTTTTGAGACTTCCCAAG
TTAGGATTAATCAGATTGCTACGATTTTAACAAGTTTGGATAAACACTGATTTATAATTACATT
GCCCTGTGTGTCTGTGGGTGGCTCAACAGAGAGGTGCAGCCCTGGTGAGGTGGAGGAAGGCATG
GCGGTTCATTTTCAGCTTTCTTGAATTGGAGCACTGAGTATCCTGTATGTACCGGGTGCTGGTG
TGAGCATGGCCACTGTGGCAGCATTTTCAAGACATTTTCAAGGTGTGGCCTGCTGTGACTCGGT
GAGCCTTGTGTATCGCTTGCAAAGGCTCAAGTGAGCCGAGTGTCTTGGTGGCGTCAGATTTCGC
AGCGCAGTGATGTAAGTTTAACTGTTAGTAATTAGAAGACTCTGTGCGCCTTCGTCTTAAAGTC
CACGTTTCCATTATTTAGCAGCTCAGCTGCCCCAGAAGGAATAGCTGCTGTAAATTAGGCTAAA
GCACGAGAGAAATTAAATCTAGTTAAAGTCCATCACAGTAACAAAAATAACTCCATAAACTAAA
AATATTAGAAACTTGACTAGGCATCTTGACTTGGTAATTTTGTTTGCTTGCTTGTTTGTTTTGT
TGAAACAGGGTCTCTCTGTGTTAGCCCAGGCTGGCCTGGACTCCTGATCCTTCTGCCTCAGCCT
CAGTTGCTGGAATTGTGGATGTATGGCATCATGTCAAGTCACGCACTTATTAAAGCACTGATGT
TAAAACTCCAATCAGGCGGACAGTGTTCACTTCTGAAAACCAAACGAAAGTCTGGCCAGGTGGG
GAGGTCTGCTGCAGATGGCTAGGACGCCCACTCTGTCACAGCCGTGCTGTGGCTGCTTCTCCTG
CACTGTGTCCTCATCTACAGTGGAATAATTTGTATTTTCAGTGTTAATTTCATGAATGGATAGA
CTTGCTTGCTTAATGTTTAAAATAAATGTACAGATTTTAA

hide sequence

RefSeq Acc Id:

XM_017597557 ⟹ XP_017453046

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	37,725,936 - 37,759,141 (+)	NCBI
Rnor_6.0	10	38,918,705 - 38,953,958 (+)	NCBI

Sequence:

show sequence

GGCGGGGCGAGCTCAGAGTGCGCCTGCGCACTGCGGTTTGTGAGCCGTAGTCTCCAGAGCGCTA
AGGTGTTTCGGTCGCTTGCGGCCAGCCTCGCCTCCAAACCCGGTGTTGTTGGACTGCATCCGGA
GCGGGGACATTGGCGGACCACCAGACGCGGCCACCATGCCGATCAATAAATCAGAGAAGCCAGA
AAGCTGCGACAACGTGAAGGTAGTTGTCAGGTGCCGACCTCTCAACGAGAGAGAGAAATCAATG
TGCTACAGACAGGCCGTCAGCGTGGATGAAATGCGGGGGACTATCACCGTCCATAAGACCGACT
CTTCCAACGAACCTCCGAAGACATTTACTTTCGATACTGTTTTTGGACCAGAGAGTAAACAACT
TGATGTATATAACTTGACTGCAAGACCAATTATTGATTCTGTCCTGGAAGGCTACAATGGGACC
ATTTTTGCATATGGACAGACTGGGACAGGCAAGACTTTCACCATGGAAGGTGTTCGAGCAGTGC
CGGGGCTCAGAGGGGTCATCCCCAACTCATTTGCTCACATATTTGGTCATATCGCAAAAGCAGA
GGGCGACACAAGGTTTCTGGTTCGAGTGTCATACTTAGAGATATATAATGAAGAAGTCCGAGAC
CTTCTGGGTAAAGATCAGACACAGAGGTTGGAGGTTAAAGAAAGGCCTGACGTGGGAGTATATA
TCAAAGATTTATCAGCATATGTAGTCAACAATGCTGACGACATGGATAGAATCATGACTCTGGG
CCACAAAAACCGTTCCGTTGGTGCGACCAATATGAACGAGCACAGTTCCCGATCGCACGCCATC
TTCACAATTACAATCGAGTGCAGCGAGAAAGGCGTGGATGGAAACATGCACGTCAGGATGGGGA
AGCTCCACCTTGTGGATCTTGCTGGGTCAGAAAGACAAGCAAAAACTGGAGCCACAGGGCAGCG
CCTCAAAGAAGCTACCAAAATCAACCTTTCATTGTCTACCTTGGGCAATGTCATTTCTGCCTTG
GTGGATGGAAAAAGCACTCATGTGCCGTATCGGAACTCTAAACTGACACGTCTCCTGCAGGATT
CCTTAGGAGGGAACTCAAAAACCATGATGTGTGCAAATATTGGGCCAGCAGATTATAATTATGA
TGAAACCATCAGTACCTTGCGGTATGCCAACCGCGCCAAGAACATTAAAAACAAAGCTAGAATT
AACGAAGACCCAAAGGACGCTCTGCTTCGCCAGTTTCAGAAAGAAATAGAAGAGCTGAAGAAAA
AGCTTGAGGAAGGGGAAGAAGTGTCAGGCTCTGACATCAGTGGGTCAGAGGAGGATGACAACGA
GGAGGGTGAACTTGGAGAAGATGGAGAAAAAAGGAAAAAGAGAAGGGGCAGTAGCAGCAGCAGT
AGCTCAGACTCCACATGTTCTGTCATAGAGAAGCCCCTGGATGAGTTCTTGCCTCGTAAAAAGA
AAGTTTCCCCAGATAAGATGATGGAAATGCAAGCGAAAATTGATGAGGAGAGAAAAGCACTGGA
AACCAAACTCGACATGGAGGAAGAAGAAAGAAACAAGGCTAGAGCTGAGCTGGAGCGACGGGAG
AAGGACCTTCTGAAAGCCCAACAAGAGCATCAGTCTTTGCTGGAAAAACTGTCTGCGCTGGAGA
AGAAGGTGATTGTCGGTGGTGTGGACTTGTTGGCCAAAGCTGAGGAGCAAGAGAAGCTTCTCGA
GGAGTCCAATATGGAGCTGGAGGAGCGGAGGAAAAGAGCTGAGCAACTTCGGAAAGAACTAGAG
GAAAAAGAGCAAGAACGCTTGGACATCGAGGAAAAATATACCAGTCTGCAAGAGGAGGCACAAG
GAAAGACCAAGAAATTAAAGAAAGTCTGGACCATGCTGATGGCTGCAAAGTCAGAGATGGCTGA
TCTCCAGCAAGAGCATCAGAGGGAAATTGAAGGCCTCCTGGAGAACATTCGGCAGCTCAGCCGT
GAGCTCCGACTTCAGATGCTCATCATTGATAACTTCATACCTCAGGACTACCAGGAAATGATTG
AAAACTACGTCCACTGGAATGAAGACATAGGAGAATGGCAGCTGAAATGTGTGGCCTACACAGG
AAATAACATGAGGAAACAAACTCCAGTCCCTGACAAGAAGGAGAGAGACCCATTTGAAGTAGAC
CTTTCCCACGTGTACCTCGCCTATACAGAGGAGAGTTTGCGTCAGTCTCTGATGAAGTTAGAAA
GGCCACGGACCTCCAAGGGAAAGGCCAGGCCAAAGACCGGTAGAAGAAAGCGTTCTGCAAAGCC
TGAGACCGTAATTGATTCTTTACTTCAGTAAATGTTACAGAATTAAAGTTACAATAATAATAAT
AAAAAGTGATATTCTCATGCCTGGAGAGAAGTCCTTAATTAAGACACGGAGGACACCTGTATGT
TCACATAATAGAAGCTGTCAATGACGGAGAGAGACTGGAATAGCAGTTTTCCTAACATTTTTTA
GACTCTTTAGTTTCTGTAACATGTAAGTGTGCAGCTCATGACCGCTGGGCATGGTGCACTGTCT
GTCACACGCTCTGCAGGCAGTAAGGGCACTGTGGTTGTTCGTGACTGTGCGTCTCTTAGCTCTG
TATTCAACGCCTGTGGCTCTAGACAAGCAGAGTCTCAGAACAGAACCCAGTCTGTCTTGTTTGC
ACCCAGCATATAGCAGATCTCCTTGTCCTGTGTCCTGTGCTGGGCTGCTCATCTGAGCAGAGAC
TTGGTCCTACACCTGCCTGGCCTGCCTAAGTGCAGCCCAACTTTATAGGAATATTAACTGCATC
TAAGTGTGCAGTGACTGCCTTTATTGATCTCCGGTGGGAAATTGTAAAATCTGATAGCTTTTCA
GGTTTACATTTTAATGCAGTTAAATACAGTTTGATCGTGCGCTTCACCTGTCCACCCGCCACTT
CTGTCGCTCTGACTCCACACTCAGCCTTTGTTGTTACTGAGTTGACCTCCCACTTCTCCTGAAG
CCAGGAGGAGCTATTTACCTTTGTCATACACACATTCTAAAAAATTCCCCTGGACATACAGCTT
GCAGGCACTCCCCATCTGCATTTTAAGTTTGATGGAAATAACTATAAAAATCGAGACCAGACTC
ACTTTTCAGAAAATGAAGCAAAGTCAAAAATGCCTTTTAATTTTCATATATATATATATATATA
TATATATATATATATATTCTCTTCTGATTTCTTGTATTGATTAATCCAGTTAGATAGTATTCTT
CTACACAAAAAAGTTACGTCCATTGTATAGTGAGATAAGTTATAGTAAATAGAAGGTTTTGGTT
TCGTCGTTTACTTATACAAATGTTTTGAAGGTCATGAGCTTCCTAAACCTAAGTTTGGAATTAT
ACAATCCACTCTGAGCTATTTATTGCAAAAGTTTTGAGACTTCCCAAGTTAGGATTAATCAGAT
TGCTACGATTTTAACAAGTTTGGATAAACACTGATTTATAATTACATTGCCCTGTGTGTCTGTG
GGTGGCTCAACAGAGAGGTGCAGCCCTGGTGAGGTGGAGGAAGGCATGGCGGTTCATTTTCAGC
TTTCTTGAATTGGAGCACTGAGTATCCTGTATGTACCGGGTGCTGGTGTGAGCATGGCCACTGT
GGCAGCATTTTCAAGACATTTTCAAGGTGTGGCCTGCTGTGACTCGGTGAGCCTTGTGTATCGC
TTGCAAAGGCTCAAGTGAGCCGAGTGTCTTGGTGGCGTCAGATTTCGCAGCGCAGTGATGTAAG
TTTAACTGTTAGTAATTAGAAGACTCTGTGCGCCTTCGTCTTAAAGTCCACGTTTCCATTATTT
AGCAGCTCAGCTGCCCCAGAAGGAATAGCTGCTGTAAATTAGGCTAAAGCACGAGAGAAATTAA
ATCTAGTTAAAGTCCATCACAGTAACAAAAATAACTCCATAAACTAAAAATATTAGAAACTTGA
CTAGGCATCTTGACTTGGTAATTTTGTTTGCTTGCTTGTTTGTTTTGTTGAAACAGGGTCTCTC
TGTGTTAGCCCAGGCTGGCCTGGACTCCTGATCCTTCTGCCTCAGCCTCAGTTGCTGGAATTGT
GGATGTATGGCATCATGTCAAGTCACGCACTTATTAAAGCACTGATGTTAAAACTCCAATCAGG
CGGACAGTGTTCACTTCTGAAAACCAAACGAAAGTCTGGCCAGGTGGGGAGGTCTGCTGCAGAT
GGCTAGGACGCCCACTCTGTCACAGCCGTGCTGTGGCTGCTTCTCCTGCACTGTGTCCTCATCT
ACAGTGGAATAATTTGTATTTTCAGTGTTAATTTCATGAATGGATAGACTTGCTTGCTTAATGT
TTAAAATAAATGTACAGATTTTAA

hide sequence

RefSeq Acc Id:

XM_017597558 ⟹ XP_017453047

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	37,725,937 - 37,761,183 (+)	NCBI
Rnor_6.0	10	38,918,705 - 38,953,958 (+)	NCBI

Sequence:

show sequence

GGCGGGGCGAGCTCAGAGTGCGCCTGCGCACTGCGGTTTGTGAGCCGTAGTCTCCAGAGCGCTA
AGGTGTTTCGGTCGCTTGCGGCCAGCCTCGCCTCCAAACCCGGTGTTGTTGGACTGCATCCGGA
GCGGGGACATTGGCGGACCACCAGACGCGGCCACCATGCCGATCAATAAATCAGAGAAGCCAGA
AAGCTGCGACAACGTGAAGGTAGTTGTCAGGTGCCGACCTCTCAACGAGAGAGAGAAATCAATG
TGCTACAGACAGGCCGTCAGCGTGGATGAAATGCGGGGGACTATCACCGTCCATAAGACCGACT
CTTCCAACGAACCTCCGAAGACATTTACTTTCGATACTGTTTTTGGACCAGAGAGTAAACAACT
TGATGTATATAACTTGACTGCAAGACCAATTATTGATTCTGTCCTGGAAGGCTACAATGGGACC
ATTTTTGCATATGGACAGACTGGGACAGGCAAGACTTTCACCATGGAAGGTGTTCGAGCAGTGC
CGGGGCTCAGAGGGGTCATCCCCAACTCATTTGCTCACATATTTGGTCATATCGCAAAAGCAGA
GGGCGACACAAGGTTTCTGGTTCGAGTGTCATACTTAGAGATATATAATGAAGAAGTCCGAGAC
CTTCTGGGTAAAGATCAGACACAGAGGTTGGAGGTTAAAGAAAGGCCTGACGTGGGAGTATATA
TCAAAGATTTATCAGCATATGTAGTCAACAATGCTGACGACATGGATAGAATCATGACTCTGGG
CCACAAAAACCGTTCCGTTGGTGCGACCAATATGAACGAGCACAGTTCCCGATCGCACGCCATC
TTCACAATTACAATCGAGTGCAGCGAGAAAGGCGTGGATGGAAACATGCACGTCAGGATGGGGA
AGCTCCACCTTGTGGATCTTGCTGGGTCAGAAAGACAAGCAAAAACTGGAGCCACAGGGCAGCG
CCTCAAAGAAGCTACCAAAATCAACCTTTCATTGTCTACCTTGGGCAATGTCATTTCTGCCTTG
GTGGATGGAAAAAGCACTCATGTGCCGTATCGGAACTCTAAACTGACACGTCTCCTGCAGGATT
CCTTAGGAGGGAACTCAAAAACCATGATGTGTGCAAATATTGGGCCAGCAGATTATAATTATGA
TGAAACCATCAGTACCTTGCGGTATGCCAACCGCGCCAAGAACATTAAAAACAAAGCTAGAATT
AACGAAGACCCAAAGGACGCTCTGCTTCGCCAGTTTCAGAAAGAAATAGAAGAGCTGAAGAAAA
AGCTTGAGGAAGGGGAAGAAGTGTCAGGCTCTGACATCAGTGGGTCAGAGGAGGATGACAACGA
GGAGGGTGAACTTGGAGAAGATGGAGAAAAAAGGAAAAAGAGAAGGGGCAGTAGCAGCAGCAGT
AGCTCAGACTCCACATGTTCTGTCATAGAGAAGCCCCTGGATGAGTTCTTGCCTCACCAAGCAG
GTAAAAAGAAAGTTTCCCCAGATAAGATGATGGAAATGCAAGCGAAAATTGATGAGGAGAGAAA
AGCACTGGAAACCAAACTCGACATGGAGGAAGAAGAAAGAAACAAGGCTAGAGCTGAGCTGGAG
CGACGGGAGAAGGACCTTCTGAAAGCCCAACAAGAGCATCAGTCTTTGCTGGAAAAACTGTCTG
CGCTGGAGAAGAAGGTGATTGTCGGTGGTGTGGACTTGTTGGCCAAAGCTGAGGAGCAAGAGAA
GCTTCTCGAGGAGTCCAATATGGAGCTGGAGGAGCGGAGGAAAAGAGCTGAGCAACTTCGGAAA
GAACTAGAGGAAAAAGAGCAAGAACGCTTGGACATCGAGGAAAAATATACCAGTCTGCAAGAGG
AGGCACAAGGAAAGACCAAGAAATTAAAGAAAGTCTGGACCATGCTGATGGCTGCAAAGTCAGA
GATGGCTGATCTCCAGCAAGAGCATCAGAGGGAAATTGAAGGCCTCCTGGAGAACATTCGGCAG
CTCAGCCGTGAGCTCCGACTTCAGATGCTCATCATTGATAACTTCATACCTCAGGACTACCAGG
AAATGATTGAAAACTACGTCCACTGGAATGAAGACATAGGAGAATGGCAGCTGAAATGTGTGGC
CTACACAGGAAATAACATGAGGAAACAAACTCCAGTCCCTGACAAGAAGGAGAGAGACCCATTT
GAAGTAGACCTTTCCCACGTGTACCTCGCCTATACAGAGGAGAGTTTGCGTCAGTCTCTGATGA
AGTTAGAAAGGCCACGGACCTCCAAGGGAAAGGCCAGGCCAAAGACCGGTAGAAGGTAAAGAAA
ATACTTGTGGGCCAACATATGATGCAGACTCTACTCTGTAACAGAATCCAGGCCTGGAAAAACC
CCGTAGTTATCCTAAGAAATAAGAAAACAGAGCAGTGCTTCTTGAGAGGCCTGCAGTTGAGTGT
GCTGGACAGCAACAAAGAAAGCCCATGACAGACTCCTATAGGCTCAGCGCCTGCACCTGGCAAG
TGACTGCTTTTCCTGCTTCTCTGAGGCTGCCTGTACTGTTAGCGTCCTCGGAGGAGATGACCAA
GGGGCATCCCTGATAAGTTTAGCTGCCACCTGACTGCACCTTGTCTGACCCCGCCTACGCTCAG
CTGCTCACCACTCTGGAATACTGTGCTGTGGCAACCTGCTCTTGTGCTTGCTTTCAGTGACCTA
CCCTGGAAAAAATGGGTAGCAGGCGAACCTTGCTATGTCAAGCATGGGCAGTGTTGGTCCATTC
CTGGACCCTGACCACAAAAAGTGTTGGCAGTTCAGTCTCTTAGGGAAAACCACTCACCTTGCAT
TTTTTTCTTCTCTTAACAGAAAGCGTTCTGCAAAGCCTGAGACCGTAATTGATTCTTTACTTCA
GTAAATGTTACAGAATTAAAGTTACAATAATAATAATAAAAAGTGATATTCTCATGCCTGGAGA
GAAGTCCTTAATTAAGACACGGAGGACACCTGTATGTTCACATAATAGAAGCTGTCAATGACGG
AGAGAGACTGGAATAGCAGTTTTCCTAACATTTTTTAGACTCTTTAGTTTCTGTAACATGTAAG
TGTGCAGCTCATGACCGCTGGGCATGGTGCACTGTCTGTCACACGCTCTGCAGGCAGTAAGGGC
ACTGTGGTTGTTCGTGACTGTGCGTCTCTTAGCTCTGTATTCAACGCCTGTGGCTCTAGACAAG
CAGAGTCTCAGAACAGAACCCAGTCTGTCTTGTTTGCACCCAGCATATAGCAGATCTCCTTGTC
CTGTGTCCTGTGCTGGGCTGCTCATCTGAGCAGAGACTTGGTCCTACACCTGCCTGGCCTGCCT
AAGTGCAGCCCAACTTTATAGGAATATTAACTGCATCTAAGTGTGCAGTGACTGCCTTTATTGA
TCTCCGGTGGGAAATTGTAAAATCTGATAGCTTTTCAGGTTTACATTTTAATGCAGTTAAATAC
AGTTTGATCGTGCGCTTCACCTGTCCACCCGCCACTTCTGTCGCTCTGACTCCACACTCAGCCT
TTGTTGTTACTGAGTTGACCTCCCACTTCTCCTGAAGCCAGGAGGAGCTATTTACCTTTGTCAT
ACACACATTCTAAAAAATTCCCCTGGACATACAGCTTGCAGGCACTCCCCATCTGCATTTTAAG
TTTGATGGAAATAACTATAAAAATCGAGACCAGACTCACTTTTCAGAAAATGAAGCAAAGTCAA
AAATGCCTTTTAATTTTCATATATATATATATATATATATATATATATATATATTCTCTTCTGA
TTTCTTGTATTGATTAATCCAGTTAGATAGTATTCTTCTACACAAAAAAGTTACGTCCATTGTA
TAGTGAGATAAGTTATAGTAAATAGAAGGTTTTGGTTTCGTCGTTTACTTATACAAATGTTTTG
AAGGTCATGAGCTTCCTAAACCTAAGTTTGGAATTATACAATCCACTCTGAGCTATTTATTGCA
AAAGTTTTGAGACTTCCCAAGTTAGGATTAATCAGATTGCTACGATTTTAACAAGTTTGGATAA
ACACTGATTTATAATTACATTGCCCTGTGTGTCTGTGGGTGGCTCAACAGAGAGGTGCAGCCCT
GGTGAGGTGGAGGAAGGCATGGCGGTTCATTTTCAGCTTTCTTGAATTGGAGCACTGAGTATCC
TGTATGTACCGGGTGCTGGTGTGAGCATGGCCACTGTGGCAGCATTTTCAAGACATTTTCAAGG
TGTGGCCTGCTGTGACTCGGTGAGCCTTGTGTATCGCTTGCAAAGGCTCAAGTGAGCCGAGTGT
CTTGGTGGCGTCAGATTTCGCAGCGCAGTGATGTAAGTTTAACTGTTAGTAATTAGAAGACTCT
GTGCGCCTTCGTCTTAAAGTCCACGTTTCCATTATTTAGCAGCTCAGCTGCCCCAGAAGGAATA
GCTGCTGTAAATTAGGCTAAAGCACGAGAGAAATTAAATCTAGTTAAAGTCCATCACAGTAACA
AAAATAACTCCATAAACTAAAAATATTAGAAACTTGACTAGGCATCTTGACTTGGTAATTTTGT
TTGCTTGCTTGTTTGTTTTGTTGAAACAGGGTCTCTCTGTGTTAGCCCAGGCTGGCCTGGACTC
CTGATCCTTCTGCCTCAGCCTCAGTTGCTGGAATTGTGGATGTATGGCATCATGTCAAGTCACG
CACTTATTAAAGCACTGATGTTAAAACTCCAATCAGGCGGACAGTGTTCACTTCTGAAAACCAA
ACGAAAGTCTGGCCAGGTGGGGAGGTCTGCTGCAGATGGCTAGGACGCCCACTCTGTCACAGCC
GTGCTGTGGCTGCTTCTCCTGCACTGTGTCCTCATCTACAGTGGAATAATTTGTATTTTCAGTG
TTAATTTCATGAATGGATAGACTTGCTTGCTTAATGTTTAAAATAAATGTACAGATTTTAA

hide sequence

RefSeq Acc Id:

XM_039086966 ⟹ XP_038942894

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	37,725,930 - 37,748,899 (+)	NCBI

RefSeq Acc Id:

XM_039086967 ⟹ XP_038942895

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	37,725,932 - 37,748,899 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_445829	(Get FASTA)	NCBI Sequence Viewer
	XP_006246409	(Get FASTA)	NCBI Sequence Viewer
	XP_006246413	(Get FASTA)	NCBI Sequence Viewer
	XP_017453045	(Get FASTA)	NCBI Sequence Viewer
	XP_017453046	(Get FASTA)	NCBI Sequence Viewer
	XP_017453047	(Get FASTA)	NCBI Sequence Viewer
	XP_038942894	(Get FASTA)	NCBI Sequence Viewer
	XP_038942895	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAD39242	(Get FASTA)	NCBI Sequence Viewer
	CAJ55821	(Get FASTA)	NCBI Sequence Viewer
	EDM04388	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_445829 ⟸ NM_053377

- UniProtKB:

F1LQZ3 (UniProtKB/TrEMBL), Q9WV62 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPINKSEKPESCDNVKVVVRCRPLNEREKSMCYRQAVSVDEMRGTITVHKTDSSNEPPKTFTFD
TVFGPESKQLDVYNLTARPIIDSVLEGYNGTIFAYGQTGTGKTFTMEGVRAVPGLRGVIPNSFA
HIFGHIAKAEGDTRFLVRVSYLEIYNEEVRDLLGKDQTQRLEVKERPDVGVYIKDLSAYVVNNA
DDMDRIMTLGHKNRSVGATNMNEHSSRSHAIFTITIECSEKGVDGNMHVRMGKLHLVDLAGSER
QAKTGATGQRLKEATKINLSLSTLGNVISALVDGKSTHVPYRNSKLTRLLQDSLGGNSKTMMCA
NIGPADYNYDETISTLRYANRAKNIKNKARINEDPKDALLRQFQKEIEELKKKLEEGEEVSGSD
ISGSEEDDNEEGELGEDGEKRKKRRDQAGKKKVSPDKMMEMQAKIDEERKALETKLDMEEEERN
KARAELERREKDLLKAQQEHQSLLEKLSALEKKVIVGGVDLLAKAEEQEKLLEESNMELEERRK
RAEQLRKELEEKEQERLDIEEKYTSLQEEAQGKTKKLKKVWTMLMAAKSEMADLQQEHQREIEG
LLENIRQLSRELRLQMLIIDNFIPQDYQEMIENYVHWNEDIGEWQLKCVAYTGNNMRKQTPVPD
KKERDPFEVDLSHVYLAYTEESLRQSLMKLERPRTSKGKARPKTGRRKRSAKPETVIDSLLQ

hide sequence

RefSeq Acc Id:

XP_006246409 ⟸ XM_006246347

- Peptide Label:

isoform X1

- Sequence:

show sequence

MPINKSEKPESCDNVKVVVRCRPLNEREKSMCYRQAVSVDEMRGTITVHKTDSSNEPPKTFTFD
TVFGPESKQLDVYNLTARPIIDSVLEGYNGTIFAYGQTGTGKTFTMEGVRAVPGLRGVIPNSFA
HIFGHIAKAEGDTRFLVRVSYLEIYNEEVRDLLGKDQTQRLEVKERPDVGVYIKDLSAYVVNNA
DDMDRIMTLGHKNRSVGATNMNEHSSRSHAIFTITIECSEKGVDGNMHVRMGKLHLVDLAGSER
QAKTGATGQRLKEATKINLSLSTLGNVISALVDGKSTHVPYRNSKLTRLLQDSLGGNSKTMMCA
NIGPADYNYDETISTLRYANRAKNIKNKARINEDPKDALLRQFQKEIEELKKKLEEGEEVSGSD
ISGSEEDDNEEGELGEDGEKRKKRRGSSSSSSSDSTCSVIEKPLDEFLPHQAGKKKVSPDKMME
MQAKIDEERKALETKLDMEEEERNKARAELERREKDLLKAQQEHQSLLEKLSALEKKVIVGGVD
LLAKAEEQEKLLEESNMELEERRKRAEQLRKELEEKEQERLDIEEKYTSLQEEAQGKTKKLKKV
WTMLMAAKSEMADLQQEHQREIEGLLENIRQLSRELRLQMLIIDNFIPQDYQEMIENYVHWNED
IGEWQLKCVAYTGNNMRKQTPVPDKKERDPFEVDLSHVYLAYTEESLRQSLMKLERPRTSKGKA
RPKTGRRKRSAKPETVIDSLLQ

hide sequence

RefSeq Acc Id:

XP_006246413 ⟸ XM_006246351

- Peptide Label:

isoform X5

- Sequence:

show sequence

MPINKSEKPESCDNVKVVVRCRPLNEREKSMCYRQAVSVDEMRGTITVHKTDSSNEPPKTFTFD
TVFGPESKQLDVYNLTARPIIDSVLEGYNGTIFAYGQTGTGKTFTMEGVRAVPGLRGVIPNSFA
HIFGHIAKAEGDTRFLVRVSYLEIYNEEVRDLLGKDQTQRLEVKERPDVGVYIKDLSAYVVNNA
DDMDRIMTLGHKNRSVGATNMNEHSSRSHAIFTITIECSEKGVDGNMHVRMGKLHLVDLAGSER
QAKTGATGQRLKEATKINLSLSTLGNVISALVDGKSTHVPYRNSKLTRLLQDSLGGNSKTMMCA
NIGPADYNYDETISTLRYANRAKNIKNKARINEDPKDALLRQFQKEIEELKKKLEEGEEVSGSD
ISGSEEDDNEEGELGEDGEKRKKRRGKKKVSPDKMMEMQAKIDEERKALETKLDMEEEERNKAR
AELERREKDLLKAQQEHQSLLEKLSALEKKVIVGGVDLLAKAEEQEKLLEESNMELEERRKRAE
QLRKELEEKEQERLDIEEKYTSLQEEAQGKTKKLKKVWTMLMAAKSEMADLQQEHQREIEGLLE
NIRQLSRELRLQMLIIDNFIPQDYQEMIENYVHWNEDIGEWQLKCVAYTGNNMRKQTPVPDKKE
RDPFEVDLSHVYLAYTEESLRQSLMKLERPRTSKGKARPKTGRRKRSAKPETVIDSLLQ

hide sequence

RefSeq Acc Id:

XP_017453047 ⟸ XM_017597558

- Peptide Label:

isoform X4

- Sequence:

show sequence

MPINKSEKPESCDNVKVVVRCRPLNEREKSMCYRQAVSVDEMRGTITVHKTDSSNEPPKTFTFD
TVFGPESKQLDVYNLTARPIIDSVLEGYNGTIFAYGQTGTGKTFTMEGVRAVPGLRGVIPNSFA
HIFGHIAKAEGDTRFLVRVSYLEIYNEEVRDLLGKDQTQRLEVKERPDVGVYIKDLSAYVVNNA
DDMDRIMTLGHKNRSVGATNMNEHSSRSHAIFTITIECSEKGVDGNMHVRMGKLHLVDLAGSER
QAKTGATGQRLKEATKINLSLSTLGNVISALVDGKSTHVPYRNSKLTRLLQDSLGGNSKTMMCA
NIGPADYNYDETISTLRYANRAKNIKNKARINEDPKDALLRQFQKEIEELKKKLEEGEEVSGSD
ISGSEEDDNEEGELGEDGEKRKKRRGSSSSSSSDSTCSVIEKPLDEFLPHQAGKKKVSPDKMME
MQAKIDEERKALETKLDMEEEERNKARAELERREKDLLKAQQEHQSLLEKLSALEKKVIVGGVD
LLAKAEEQEKLLEESNMELEERRKRAEQLRKELEEKEQERLDIEEKYTSLQEEAQGKTKKLKKV
WTMLMAAKSEMADLQQEHQREIEGLLENIRQLSRELRLQMLIIDNFIPQDYQEMIENYVHWNED
IGEWQLKCVAYTGNNMRKQTPVPDKKERDPFEVDLSHVYLAYTEESLRQSLMKLERPRTSKGKA
RPKTGRR

hide sequence

RefSeq Acc Id:

XP_017453046 ⟸ XM_017597557

- Peptide Label:

isoform X3

- Sequence:

show sequence

MPINKSEKPESCDNVKVVVRCRPLNEREKSMCYRQAVSVDEMRGTITVHKTDSSNEPPKTFTFD
TVFGPESKQLDVYNLTARPIIDSVLEGYNGTIFAYGQTGTGKTFTMEGVRAVPGLRGVIPNSFA
HIFGHIAKAEGDTRFLVRVSYLEIYNEEVRDLLGKDQTQRLEVKERPDVGVYIKDLSAYVVNNA
DDMDRIMTLGHKNRSVGATNMNEHSSRSHAIFTITIECSEKGVDGNMHVRMGKLHLVDLAGSER
QAKTGATGQRLKEATKINLSLSTLGNVISALVDGKSTHVPYRNSKLTRLLQDSLGGNSKTMMCA
NIGPADYNYDETISTLRYANRAKNIKNKARINEDPKDALLRQFQKEIEELKKKLEEGEEVSGSD
ISGSEEDDNEEGELGEDGEKRKKRRGSSSSSSSDSTCSVIEKPLDEFLPRKKKVSPDKMMEMQA
KIDEERKALETKLDMEEEERNKARAELERREKDLLKAQQEHQSLLEKLSALEKKVIVGGVDLLA
KAEEQEKLLEESNMELEERRKRAEQLRKELEEKEQERLDIEEKYTSLQEEAQGKTKKLKKVWTM
LMAAKSEMADLQQEHQREIEGLLENIRQLSRELRLQMLIIDNFIPQDYQEMIENYVHWNEDIGE
WQLKCVAYTGNNMRKQTPVPDKKERDPFEVDLSHVYLAYTEESLRQSLMKLERPRTSKGKARPK
TGRRKRSAKPETVIDSLLQ

hide sequence

RefSeq Acc Id:

XP_017453045 ⟸ XM_017597556

- Peptide Label:

isoform X2

- Sequence:

show sequence

MINKSEKPESCDNVKVVVRCRPLNEREKSMCYRQAVSVDEMRGTITVHKTDSSNEPPKTFTFDT
VFGPESKQLDVYNLTARPIIDSVLEGYNGTIFAYGQTGTGKTFTMEGVRAVPGLRGVIPNSFAH
IFGHIAKAEGDTRFLVRVSYLEIYNEEVRDLLGKDQTQRLEVKERPDVGVYIKDLSAYVVNNAD
DMDRIMTLGHKNRSVGATNMNEHSSRSHAIFTITIECSEKGVDGNMHVRMGKLHLVDLAGSERQ
AKTGATGQRLKEATKINLSLSTLGNVISALVDGKSTHVPYRNSKLTRLLQDSLGGNSKTMMCAN
IGPADYNYDETISTLRYANRAKNIKNKARINEDPKDALLRQFQKEIEELKKKLEEGEEVSGSDI
SGSEEDDNEEGELGEDGEKRKKRRGSSSSSSSDSTCSVIEKPLDEFLPHQAGKKKVSPDKMMEM
QAKIDEERKALETKLDMEEEERNKARAELERREKDLLKAQQEHQSLLEKLSALEKKVIVGGVDL
LAKAEEQEKLLEESNMELEERRKRAEQLRKELEEKEQERLDIEEKYTSLQEEAQGKTKKLKKVW
TMLMAAKSEMADLQQEHQREIEGLLENIRQLSRELRLQMLIIDNFIPQDYQEMIENYVHWNEDI
GEWQLKCVAYTGNNMRKQTPVPDKKERDPFEVDLSHVYLAYTEESLRQSLMKLERPRTSKGKAR
PKTGRRKRSAKPETVIDSLLQ

hide sequence

RefSeq Acc Id:

ENSRNOP00000069057 ⟸ ENSRNOT00000077569

RefSeq Acc Id:

ENSRNOP00000009999 ⟸ ENSRNOT00000009999

RefSeq Acc Id:	XP_038942894 ⟸ XM_039086966
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038942895 ⟸ XM_039086967
- Peptide Label:	isoform X7

RefSeq Acc Id:

ENSRNOP00000096291 ⟸ ENSRNOT00000110159

RefSeq Acc Id:

ENSRNOP00000096108 ⟸ ENSRNOT00000111035

RefSeq Acc Id:

ENSRNOP00000085263 ⟸ ENSRNOT00000096824

Protein Domains

Kinesin motor

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13697181

Promoter ID:

EPDNEW_R7704

Type:

initiation region

Name:

Kif3a_1

Description:

kinesin family member 3a

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R7705

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	38,918,751 - 38,918,811	EPDNEW

RGD ID:

13697185

Promoter ID:

EPDNEW_R7705

Type:

multiple initiation site

Name:

Kif3a_2

Description:

kinesin family member 3a

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R7704

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	38,919,203 - 38,919,263	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN-Lx/CubMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BUF/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH2/CubMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH3/CubMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

DA/OlaHsd (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/DuCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

F344/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FXLE16/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE18/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/FarMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

HXB10/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB2/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB20/IpcvMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB31/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB4/IpcvMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEXF10A/StmMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF11/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1A/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1C/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF2B/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF3/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF4/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

M520/NRrrcMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MWF/Hsd (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

PVG/Seac (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/OlalpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/A3NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/RijCrl (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621536	AgrOrtholog
Ensembl Genes	ENSRNOG00000007515	Ensembl, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000009999	UniProtKB/TrEMBL
	ENSRNOP00000069057	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000009999	UniProtKB/TrEMBL
	ENSRNOT00000077569	UniProtKB/TrEMBL
Gene3D-CATH	3.40.850.10	UniProtKB/TrEMBL
InterPro	Kinesin-like_fam	UniProtKB/TrEMBL
	Kinesin_motor_CS	UniProtKB/TrEMBL
	Kinesin_motor_dom	UniProtKB/TrEMBL
	Kinesin_motor_dom_sf	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
KEGG Report	rno:84392	UniProtKB/TrEMBL
NCBI Gene	84392	ENTREZGENE
PANTHER	PTHR24115	UniProtKB/TrEMBL
Pfam	Kinesin	UniProtKB/TrEMBL
PharmGKB	KIF3A	RGD
PhenoGen	Kif3a	PhenoGen
PRINTS	KINESINHEAVY	UniProtKB/TrEMBL
PROSITE	KINESIN_MOTOR_DOMAIN1	UniProtKB/TrEMBL
	KINESIN_MOTOR_DOMAIN2	UniProtKB/TrEMBL
SMART	KISc	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
UniProt	A0A0G2JUD6_RAT	UniProtKB/TrEMBL
	F1LQZ3	ENTREZGENE, UniProtKB/TrEMBL
	Q2P9S3_RAT	UniProtKB/TrEMBL
	Q9WV62	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2004-09-10	Kif3a	kinesin family member 3a			Symbol and Name status set to approved	1299863	APPROVED
2002-08-07	Kif3a	kinesin family member 3a			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

RGD Manual Annotations

Imported Annotations - PID (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

RGD Manual Annotations

Imported Annotations - PID (archival)