Phykpl (5-phosphohydroxy-L-lysine phospho-lyase)

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Gene: Phykpl (5-phosphohydroxy-L-lysine phospho-lyase) Rattus norvegicus

Analyze

Symbol:

Phykpl

Name:

5-phosphohydroxy-L-lysine phospho-lyase

RGD ID:

2293818

Description:

Predicted to have identical protein binding activity. Predicted to localize to mitochondrion. Orthologous to human PHYKPL (5-phosphohydroxy-L-lysine phospho-lyase); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

Agxt2l2; alanine--glyoxylate aminotransferase 2-like 2; alanine-glyoxylate aminotransferase 2-like 2; MGC188042

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	10	34,938,661 - 34,960,661 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	34,938,667 - 34,960,840 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	36,804,284 - 36,826,629 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	37,100,238 - 37,117,744 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	10	35,196,736 - 35,214,241 (+)	NCBI		Celera
Cytogenetic Map	10	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Phosphohydroxylysinuria (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3-chloropropane-1,2-diol (EXP)

6-propyl-2-thiouracil (EXP)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

calcitriol (ISO)

capsaicin (EXP)

coumestrol (ISO)

cyclosporin A (ISO)

dibutyl phthalate (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

furan (EXP)

genistein (EXP)

hydrogen peroxide (ISO)

methylmercury chloride (ISO)

Monobutylphthalate (EXP)

paracetamol (ISO)

pirinixic acid (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

testosterone (ISO)

tetrachloromethane (EXP)

trichostatin A (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

mitochondrion (IEA)

Molecular Function

identical protein binding (ISO)

protein binding (ISO)

pyridoxal phosphate binding (IEA)

transaminase activity (IEA)

References

References - curated


1.	OMIM Disease Annotation Pipeline
2.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:15632090	PMID:16189514	PMID:18614015	PMID:21873635	PMID:25416956	PMID:31515488

Genomics

Comparative Map Data

Phykpl
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	10	34,938,661 - 34,960,661 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	34,938,667 - 34,960,840 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	36,804,284 - 36,826,629 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	37,100,238 - 37,117,744 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	10	35,196,736 - 35,214,241 (+)	NCBI		Celera
Cytogenetic Map	10	q21	NCBI

PHYKPL
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	5	178,208,471 - 178,232,802 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	5	178,207,144 - 178,232,822 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	5	177,635,475 - 177,659,823 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	177,568,196 - 177,592,392 (-)	NCBI	NCBI36		hg18	NCBI36
Celera	5	173,262,527 - 173,286,791 (-)	NCBI
Cytogenetic Map	5	q35.3	NCBI
HuRef	5	172,361,764 - 172,386,111 (-)	NCBI		HuRef
CHM1_1	5	177,067,898 - 177,092,260 (-)	NCBI		CHM1_1

Phykpl
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	51,474,751 - 51,494,091 (+)	NCBI	GRCm39		mm39
GRCm38	11	51,584,654 - 51,603,264 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	51,584,757 - 51,604,489 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	51,398,259 - 51,416,771 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	11	51,428,226 - 51,446,460 (+)	NCBI			mm8
Celera	11	56,156,087 - 56,174,597 (+)	NCBI		Celera
Cytogenetic Map	11	B1.3	NCBI

Phykpl
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955408	2,038,169 - 2,060,570 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955408	2,038,168 - 2,062,681 (+)	NCBI	ChiLan1.0	ChiLan1.0

PHYKPL
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	5	180,625,530 - 180,651,618 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	180,625,530 - 180,651,618 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	5	173,368,383 - 173,394,377 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

PHYKPL
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	11	3,323,722 - 3,358,063 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	11	3,324,035 - 3,358,070 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Phykpl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936647	456,633 - 480,711 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PHYKPL
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	80,137,982 - 80,191,957 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	80,142,273 - 80,188,753 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	81,754,503 - 81,800,963 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PHYKPL
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	79,900,615 - 79,926,879 (-)	NCBI
ChlSab1.1 Ensembl	23	79,898,807 - 79,926,305 (-)	Ensembl

Phykpl
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624733	41,402,276 - 41,425,635 (-)	NCBI

Position Markers

RH134157

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	10	34,937,506 - 34,937,690	NCBI	Rnor6.0
Rnor_6.0	10	37,030,880 - 37,031,064	NCBI	Rnor6.0
Rnor_5.0	10	36,803,162 - 36,803,346	UniSTS	Rnor5.0
Rnor_5.0	10	34,709,854 - 34,710,038	UniSTS	Rnor5.0
RGSC_v3.4	10	37,099,075 - 37,099,259	UniSTS	RGSC3.4
Celera	10	35,195,573 - 35,195,757	UniSTS
RH 3.4 Map	10	386.0	UniSTS

RH138480

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	10	34,955,287 - 34,955,450	NCBI	Rnor6.0
Rnor_6.0	10	37,048,973 - 37,049,136	NCBI	Rnor6.0
Rnor_5.0	10	36,821,255 - 36,821,418	UniSTS	Rnor5.0
Rnor_5.0	10	34,727,633 - 34,727,796	UniSTS	Rnor5.0
RGSC_v3.4	10	37,116,856 - 37,117,019	UniSTS	RGSC3.4
Celera	10	35,213,353 - 35,213,516	UniSTS
Cytogenetic Map	10	q22	UniSTS
RH 3.4 Map	10	386.5	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2293680	Bss40	Bone structure and strength QTL 40	5.66	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	10	1	35538813	Rat
634327	Hc4	Hypercalciuria QTL 4	2.4		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	10	1	38594330	Rat
7411611	Foco17	Food consumption QTL 17	18.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	10	1	42669970	Rat
10401803	Kidm50	Kidney mass QTL 50			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	10	1	44902893	Rat
631554	Bp133	Blood pressure QTL 133		0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	764421	66221621	Rat
2298544	Neuinf9	Neuroinflammation QTL 9	4.6		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	10	5877536	64401490	Rat
8662860	Vetf10	Vascular elastic tissue fragility QTL 10			artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	10	6229095	75983805	Rat
631660	Hcar1	Hepatocarcinoma resistance QTL 1	3.4	0.0001	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	10	6229289	36185929	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6429075	99492409	Rat
1578761	Stresp21	Stress response QTL 21	3.3		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	7521450	52521450	Rat
2303118	Mamtr7	Mammary tumor resistance QTL 7		0.003	mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	10	9841807	108540162	Rat
9590310	Scort19	Serum corticosterone level QTL 19	6.3	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	12639513	57639513	Rat
9590268	Scort13	Serum corticosterone level QTL 13	3.26	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	12639513	57639513	Rat
9589136	Insul27	Insulin level QTL 27	10.46	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	10	12639513	57639513	Rat
2301967	Cm73	Cardiac mass QTL 73	4.55		heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	14827894	92423564	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14827894	107857673	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14827894	110992275	Rat
1354587	Kidm21	Kidney mass QTL 21	3.3		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	10	15375474	62469074	Rat
631564	Apr3	Acute phase response QTL 3	3.9		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	10	16468736	61468736	Rat
6893350	Bw99	Body weight QTL 99	0.87	0.16	body mass (VT:0001259)	body weight (CMO:0000012)	1	17121542	62121542	Rat
6893352	Bw100	Body weight QTL 100	0.33	0.6	body mass (VT:0001259)	body weight (CMO:0000012)	1	17121542	62121542	Rat
631532	Cm50	Cardiac mass QTL 50	6.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	10	18246394	53637634	Rat
1598852	Anxrr19	Anxiety related response QTL 19	5.07		body movement coordination trait (VT:0005424)	number of rearing movements in an experimental apparatus (CMO:0001752)	10	19402814	64402814	Rat
1554317	Bmd4	Bone mineral density QTL 4	9.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	20170031	102897474	Rat
70223	Bp57	Blood pressure QTL 57	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	21523906	83549467	Rat
70188	BpQTLcluster1	Blood pressure QTL cluster 1	4.864		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	21523906	90312401	Rat
70188	BpQTLcluster1	Blood pressure QTL cluster 1	4.864		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	21523906	90312401	Rat
70188	BpQTLcluster1	Blood pressure QTL cluster 1	4.864		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	21523906	90312401	Rat
70188	BpQTLcluster1	Blood pressure QTL cluster 1	4.864		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	1	21523906	90312401	Rat
70198	BpQTLcluster9	Blood pressure QTL cluster 9	2.94		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	21523906	90312401	Rat
1581497	Esta1	Estrogen-induced thymic atrophy QTL 1			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	21707766	64648311	Rat
631531	Iresp2	Immunoglobin response QTL2	6.3		blood immunoglobulin E amount (VT:0002492)	serum total immunoglobulin E level (CMO:0001542)	10	22402817	38204229	Rat
724556	Pur2	Proteinuria QTL 2	5.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	22901497	93886300	Rat
1331762	Rf40	Renal function QTL 40	3.873		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	10	23861015	66539843	Rat
1331791	Cm31	Cardiac mass QTL 31	3.84606		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	23861015	112626471	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	24483076	107857673	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	24483076	107857673	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	24483076	107857673	Rat
634329	Pia15	Pristane induced arthritis QTL 15	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	24884084	47487910	Rat
70224	Eae3	Experimental allergic encephalomyelitis QTL 3	4.1		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	10	27237530	64648311	Rat
1298069	Bp168	Blood pressure QTL 168	5.5		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	10	27237530	101482600	Rat
631542	Bp82	Blood pressure QTL 82	6.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	27237530	102427718	Rat
2300171	Bmd58	Bone mineral density QTL 58	4.9	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	28789280	73789280	Rat
1600371	Mcs21	Mammary carcinoma susceptibility QTL 21	3		mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	10	30021354	54057745	Rat
2292441	Bp308	Blood pressure QTL 308			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	30099909	75099909	Rat
10402859	Bp381	Blood pressure QTL 381		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	30099909	75099909	Rat
724527	Bp148	Blood pressure QTL 148		0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	30983805	75983805	Rat
1576311	Pia26	Pristane induced arthritis QTL 26			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	31919397	78343192	Rat
1578779	Tcas10	Tongue tumor susceptibility QTL 10	3.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	10	33179030	78179030	Rat
631557	Bp136	Blood pressure QTL 136		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	33343192	78343192	Rat

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001128196	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767647	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767648	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767649	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767650	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767651	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767652	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC105470	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC079163	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC158766	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ209628	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000059104 ⟹ ENSRNOP00000055878

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	10	34,938,691 - 34,956,038 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000086443 ⟹ ENSRNOP00000071887

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	10	34,938,667 - 34,960,840 (+)	Ensembl

RefSeq Acc Id:

NM_001128196 ⟹ NP_001121668

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	34,938,669 - 34,956,175 (+)	NCBI
Rnor_5.0	10	36,804,284 - 36,826,629 (+)	NCBI
RGSC_v3.4	10	37,100,238 - 37,117,744 (+)	RGD
Celera	10	35,196,736 - 35,214,241 (+)	RGD

Sequence:

show sequence

GACTGACTGACCGCTCGGCGCCATGGCCGCGGACCGGCGCGCCAAGGCCGCCACTCTGGACCTG
AGACGTCGGCTGCTCAGCTCTTCCTGCAGACTCTTTTTTCCTGAGAATCCTGTTAAGATTATCC
GAGGCCAAGGGCAGTACTTGTATGATGAGCAAGGGCGAGAGTACCTGGACTGCATCAACAATGT
GGCTCATGTCGGGCACTGCCACCCTACCGTGGTCCAAGCTGCACATGAACAGAACCTGGTGCTC
AACACCAACAGCCGATATCTACATGACAACATCGTGGACTATGCCCAGAGGCTGTCAGAGACCC
TGCCAGAGAAGCTTTCTGTGTTTTATTTCCTGAATTCTGGGTCAGAAGCCAACGACCTGGCCTT
GAGACTAGCTCGCCAGTACACAGGACACCAGGATGTGGTGGTATTAGACCATGCTTATCATGGT
CACCTGAGCTCATTGATCGACATCAGTCCCTACAAGTTCCGGAATCTGGATGGCCAGAAGGCTC
CGCTCCCAGACACCTACCGGGGACCTTACCGGGAGGACCACCCCGATCCAGCAGGGGCCTATGC
CAGTGAGGTGAAGCATGTCATCAGCAGTGCACAGAAGAAGGGCAGGAAGATTGCAGCCTTCTTC
GCCGAGTCTCTGCCTAGTGTGAGTGGACAGATCATTCCCCCTGCTGGATACTTCTCCCAGGTGG
CGGAGCACATACGCAGAGCCGGAGGGCTCTTTGTGGCTGATGAGATCCAGGTTGGTTTTGGCCG
AGTAGGCAAACACTTTTGGGCCTTCCAGCTGGAGGGAGAAGACTTTGTCCCCGACATTGTCACC
ATGGGCAAGTCCATCGGCAATGGTCATCCTGTTGCCTGCCTGGCCACTACCCAAGCTGTGTCAA
GGGCATTTGAAGCTACCGGTGTAGAATACTTCAACACGTTTGGTGGCAATCCTGTGTCCTGTGC
TGTGGGGCTAGCAGTCCTGGATGTCTTGAAAACAGAACAGCTCCAGGCTCATGCCACTAATGTG
GGCAGCTTCCTTATGGAGCACCTCAGCCAGCAGAAAGCCAAACATCCTATCATTGGAGATGTCA
GGGGCACTGGGCTCTTCATTGGTGTGGATCTGATCAAGGATGAGACTCTGAGGACACCAGCAAC
TGAAGAGGCAGAGTATTTGGTCTCCAGGCTAAAGGAAAACTACATTTTACTGAGCACTGACGGC
CCTGGGAGGAATATCCTGAAGTTCAAGCCTCCAATGTGCTTCAGCCTTGATAACGCACAGCATG
TGGTTGCAAAGCTGGATGACATTCTAACAGACATGGAAGAAAAAGTACGAAGTTGTGAAACACT
GAGGATCAAACACCCTCCAGGGTCCACAGGTCCAGGCTGCAGAGCGGCAGCAGGAAGCAGACCC
TCCAATCTAGAACAGGGTAACCTGGTAATAAAATCAGCCCCCTAATGCCGCTCTGACCTCTGAG
ACGCCACACGCTGCCTACAACAACTAGAGCTCTGGAATAGTAAACAGGAGAGTGATTTCCGGGG
GAAATTTTAAATAAGATGCACATGGGACAGGCCATAAAAGTTTGCCAAGTTAAAAAAAAAAAAA
AAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_008767647 ⟹ XP_008765869

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	34,938,661 - 34,956,175 (+)	NCBI

Sequence:

show sequence

CGTCTGGTGACTGACTGACCGCTCGGCGCCATGGCCGCGGACCGGCGCGCCAAGGCCGCCACTC
TGGACCTGAGACGTCGGCTGCTCAGCTCTTCCTGCAGACTCTTTTTTCCTGAGAATCCTGTTAA
GATTATCCGAGGCCAAGGGCAGTACTTGTATGATGAGCAAGGGCGAGAGTACCTGGACTGCATC
AACAATGTGGCTCATGTCGGGCACTGCCACCCTACCGTGGTCCAAGCTGCACATGAACAGAACC
TGGTGCTCAACACCAACAGCCGATATCTACATGACAACATCGTGGACTATGCCCAGAGGCTGTC
AGAGACCCTGCCAGAGAAGCTTTCTGTGTTTTATTTCCTGAATTCTGGGTCAGAAGCCAACGAC
CTGGCCTTGAGACTAGCTCGCCAGTACACAGGACACCAGGATGTGGTGGTATTAGACCATGCTT
ATCATGGTCACCTGAGCTCATTGATCGACATCAGTCCCTACAAGTTCCGGAATCTGGATGGCCA
GAAGGAATGGGTCCATGTGGCTCCGCTCCCAGACACCTACCGGGGACCTTACCGGGAGGACCAC
CCCGATCCAGCAGGGGCCTATGCCAGTGAGGTGAAGCATGTCATCAGCAGTGCACAGAAGAAGG
GCAGGAAGATTGCAGCCTTCTTCGCCGAGTCTCTGCCTAGTGTGAGTGGACAGATCATTCCCCC
TGCTGGATACTTCTCCCAGGTGGCGGAGCACATACGCAGAGCCGGAGGGCTCTTTGTGGCTGAT
GAGATCCAGGTTGGTTTTGGCCGAGTAGGCAAACACTTTTGGGCCTTCCAGCTGGAGGGAGAAG
ACTTTGTCCCCGACATTGTCACCATGGGCAAGTCCATCGGCAATGGTCATCCTGTTGCCTGCCT
GGCCACTACCCAAGCTGTGTCAAGGGCATTTGAAGCTACCGGTGTAGAATACTTCAACACGTTT
GGTGGCAATCCTGTGTCCTGTGCTGTGGGGCTAGCAGTCCTGGATGTCTTGAAAACAGAACAGC
TCCAGGCTCATGCCACTAATGTGGGCAGCTTCCTTATGGAGCACCTCAGCCAGCAGAAAGCCAA
ACATCCTATCATTGGAGATGTCAGGGGCACTGGGCTCTTCATTGGTGTGGATCTGATCAAGGAT
GAGACTCTGAGGACACCAGCAACTGAAGAGGCAGAGTATTTGGTCTCCAGGCTAAAGGAAAACT
ACATTTTACTGAGCACTGACGGCCCTGGGAGGAATATCCTGAAGTTCAAGCCTCCAATGTGCTT
CAGCCTTGATAACGCACAGCATGTGGTTGCAAAGCTGGATGACATTCTAACAGACATGGAAGAA
AAAGTACGAAGTTGTGAAACACTGAGGATCAAACACCCTCCAGGGTCCACAGGTCCAGGCTGCA
GAGCGGCAGCAGGAAGCAGACCCTCCAATCTAGAACAGGGTAACCTGGTAATAAAATCAGCCCC
CTAATGCCGCTCTGACCTCTGAGACGCCACACGCTGCCTACAACAACTAGAGCTCTGGAATAGT
AAACAGGAGAGTGATTTCCGGGGGAAATTTTAAATAAGATGCACATGGGACAGGCCATAAAAGT
TTGCCAAGTTAAA

hide sequence

RefSeq Acc Id:

XM_008767648 ⟹ XP_008765870

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	34,938,661 - 34,959,185 (+)	NCBI

Sequence:

show sequence

CGTCTGGTGACTGACTGACCGCTCGGCGCCATGGCCGCGGACCGGCGCGCCAAGGCCGCCACTC
TGGACCTGAGACGTCGGCTGCTCAGCTCTTCCTGCAGACTCTTTTTTCCTGAGAATCCTGTTAA
GATTATCCGAGGCCAAGGGCAGTACTTGTATGATGAGCAAGGGCGAGAGTACCTGGACTGCATC
AACAATGTGGCTCATGTCGGGCACTGCCACCCTACCGTGGTCCAAGCTGCACATGAACAGAACC
TGGTGCTCAACACCAACAGCCGATATCTACATGACAACATCGTGGACTATGCCCAGAGGCTGTC
AGAGACCCTGCCAGAGAAGCTTTCTGTGTTTTATTTCCTGAATTCTGGGTCAGAAGCCAACGAC
CTGGCCTTGAGACTAGCTCGCCAGTACACAGGACACCAGGATGTGGTGGTATTAGACCATGCTT
ATCATGGTCACCTGAGCTCATTGATCGACATCAGTCCCTACAAGTTCCGGAATCTGGATGGCCA
GAAGGAATGGGTCCATGTGGCTCCGCTCCCAGACACCTACCGGGGACCTTACCGGGAGGACCAC
CCCGATCCAGCAGGGGCCTATGCCAGTGAGGTGAAGCATGTCATCAGCAGTGCACAGAAGAAGG
GCAGGAAGATTGCAGCCTTCTTCGCCGAGTCTCTGCCTAGTGTGAGTGGACAGATCATTCCCCC
TGCTGGATACTTCTCCCAGGTGGCGGAGCACATACGCAGAGCCGGAGGGCTCTTTGTGGCTGAT
GAGATCCAGGTTGGTTTTGGCCGAGTAGGCAAACACTTTTGGGCCTTCCAGCTGGAGGGAGAAG
ACTTTGTCCCCGACATTGTCACCATGGGCAAGTCCATCGGCAATGGTCATCCTGTTGCCTGCCT
GGCCACTACCCAAGCTGTGTCAAGGGCATTTGAAGCTACCGGTGTAGAATACTTCAACACGTTT
GGTGGCAATCCTGTGTCCTGTGCTGTGGGGCTAGCAGTCCTGGATGTCTTGAAAACAGAACAGC
TCCAGGCTCATGCCACTAATGTGGGCAGCTTCCTTATGGAGCACCTCAGCCAGCAGAAAGCCAA
ACATCCTATCATTGGAGATGTCAGGGGCACTGGGCTCTTCATTGGTGTGGATCTGATCAAGGAT
GAGACTCTGAGGACACCAGCAACTGAAGAGGCAGAGTATTTGGTCTCCAGGCTAAAGGAAAACT
ACATTTTACTGAGCACTGACGGCCCTGGGAGGAATATCCTGAAGTTCAAGCCTCCAATGTGCTT
CAGCCTTGATAACGCACAGCATGTGGTTGCAAAGCTGGATGACATTCTAACAGACATGGAAGAA
AAAGTACGAAGTTGTGAAACACTGAGGATCAAACACCCTCCAGAAGATACTCATCCTACTCAAA
TATAACAGGACACCAAGATGACACCCACCTTACAGACAAGTGTGTGAGGCTTCACTGGAAGACA
TACTGCCTGCCACTCTTAAGCAATTATTATTAAGATAGGCTTTATTTCTAAATCCAAACAAGAC
CCAGTCAGACTTTTATGCCTGGAAACTTAGAGGGTGTACATGCTTCTAAAGAATGTTTTTTTTT
TTTCTCGGAGCTGGGGACCGAACCCAGGGCCTTGTGCTTCCTGGGCAAGCTACCACTGAGCTAA
ATCCCCAACCCCCTAAAGAATGTTTTTAAAGACAGTCCTGACATACTCCCACAGGTAAAAAATG
AGCTAGACATGGCACATGCTTTAATCTCATCTCACTGGAAGGTGGAAACAGGCAGGCAGAACTC
TTCCAGTTTGATTGAGACCAGCCTGGTATTAGAGGGAGCACTGGTCCTGCCAGGGCAGCAGCAT
GATGCTCTCTCAAAAGGAGGTGGGAAGATGAATTTTATCCCTCCATCAAGCTATGCCTTCTGTT
GTATCTGAATTAAAGACACTGAATAATTTGAATATTTACTTCTAAGCCCTATCAGCAGTTTTCA
CTATCATAGAGGCTTAAGGCTACTACTTCATATTAGGGCCTGCCAAAAAAGTCATTGTTCACTA
GAATAACTAACAATGTCCCACCCAACTGCCTGCTTTATTTAATCCACAACCCAAGCTTTTTAAA
CTTGCATTGAGAATGGGAAGAATCTTCATGGAGCCCCACCCTCCTCATATGGGCTGCCACTCCA
GTTCTCCAGTAAGCTGCATGCAGCCACAGCCAGCCACGCCTTCAATCCTAATCAACTTGAAAGC
TACCACTCCACTAAACTGACTCCATTTTGAGTTAACAGGATCCCAGTGAGCTCTTTTTTGGTCT
TTACTAGCATTAGGGTTGACTAAAGCAACCTTCCTCTGAAGCAAGAAAAATGTGTCAGTATAGA
TGGAAACCTACTACGGGACCCCGTTTCTGGACCTACAGTTCCAGAAAACTGTCTTCTATTATTA
AGACCACTGCTAACCCCTGAACAACCCCTAATACTAAACCAGAAAGCAAAGAACCTAGACAACA
GCTCTATTCACAAAAGCCAGGCTTTTTTCCCCCTATGCACCTGCTATGTTAGTTTTTATTATTT
AAGTACAGTGTATGGTGCCTACAGAAGCCTCCAAAGAGCATCAGATCCCTTGAAATGTGTGGTT
ATAGGTGGTTGTGAGCCACTCACTGTGGTTGTTAGGAACAGACCAGAGTCCTCCTGAAGAGCCA
ACCACTGCGCTAGCTGTTTCCAACCCGACATTTCTTAAGGGCCAGACCATCTACTTTAATCAGC
ATTGTGTCTGGTGAGAAACAAGGTCTTGCTGACCTAGAAGGATCTCACAGGTAGTCTAACCTCA
TCTATACCTCCAAGAGCCAAAAGCAGATGACAGTTTGACACCTTACCTTGCTACCACTGACAGT
ATGGAATTTTTTCTCCAGAACTTTCTTCACAGGGTCTTCCTCTTTAAATGTAATAAAAACAAAA
CCCCGTCTTTTGTTCAA

hide sequence

RefSeq Acc Id:

XM_008767649 ⟹ XP_008765871

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	34,938,661 - 34,960,181 (+)	NCBI

Sequence:

show sequence

CGTCTGGTGACTGACTGACCGCTCGGCGCCATGGCCGCGGACCGGCGCGCCAAGGCCGCCACTC
TGGACCTGAGACGTCGGCTGCTCAGCTCTTCCTGCAGACTCTTTTTTCCTGAGAATCCTGTTAA
GATTATCCGAGGCCAAGGGCAGTACTTGTATGATGAGCAAGGGCGAGAGTACCTGGACTGCATC
AACAATGTGGCTCATGTCGGGCACTGCCACCCTACCGTGGTCCAAGCTGCACATGAACAGAACC
TGGTGCTCAACACCAACAGCCGATATCTACATGACAACATCGTGGACTATGCCCAGAGGCTGTC
AGAGACCCTGCCAGAGAAGCTTTCTGTGTTTTATTTCCTGAATTCTGGGTCAGAAGCCAACGAC
CTGGCCTTGAGACTAGCTCGCCAGTACACAGGACACCAGGATGTGGTGGTATTAGACCATGCTT
ATCATGGTCACCTGAGCTCATTGATCGACATCAGTCCCTACAAGTTCCGGAATCTGGATGGCCA
GAAGGAATGGGTCCATGTGGCTCCGCTCCCAGACACCTACCGGGGACCTTACCGGGAGGACCAC
CCCGATCCAGCAGGGGCCTATGCCAGTGAGGTGAAGCATGTCATCAGCAGTGCACAGAAGAAGG
GCAGGAAGATTGCAGCCTTCTTCGCCGAGTCTCTGCCTAGTGTGAGTGGACAGATCATTCCCCC
TGCTGGATACTTCTCCCAGGTGGCGGAGCACATACGCAGAGCCGGAGGGCTCTTTGTGGCTGAT
GAGATCCAGGTTGGTTTTGGCCGAGTAGGCAAACACTTTTGGGCCTTCCAGCTGGAGGGAGAAG
ACTTTGTCCCCGACATTGTCACCATGGGCAAGTCCATCGGCAATGGTCATCCTGTTGCCTGCCT
GGCCACTACCCAAGCTGTGTCAAGGGCATTTGAAGCTACCGGTGTAGAATACTTCAACACGTTT
GGTGGCAATCCTGTGTCCTGTGCTGTGGGGCTAGCAGTCCTGGATGTCTTGAAAACAGAACAGC
TCCAGGCTCATGCCACTAATGTGGGCAGCTTCCTTATGGAGCACCTCAGCCAGCAGAAAGCCAA
ACATCCTATCATTGGAGATGTCAGGGGCACTGGGCTCTTCATTGGTGTGGATCTGATCAAGGAT
GAGACTCTGAGGACACCAGCAACTGAAGAGGCAGAGTATTTGGTCTCCAGGCTAAAGGAAAACT
ACATTTTACTGAGCACTGACGGCCCTGGGAGGAATATCCTGAAGTTCAAGCCTCCAATGTGCTT
CAGCCTTGATAACGCACAGCATGTGGTTGCAAAGCTGGATGACATTCTAACAGACATGGAAGAA
AAAGTACGAAGTTGTGAAACACTGAGGATCAAACACCCTCCAGGAATCTAACTCTGCTGTGGCA
ATCAACACTGCAGTGCATGAGTTACCTAGGATTCCGAATCCTAGCAGAGAGCACTGCTAAATAC
CCA

hide sequence

RefSeq Acc Id:

XM_008767650 ⟹ XP_008765872

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	34,938,661 - 34,960,661 (+)	NCBI

Sequence:

show sequence

CGTCTGGTGACTGACTGACCGCTCGGCGCCATGGCCGCGGACCGGCGCGCCAAGGCCGCCACTC
TGGACCTGAGACGTCGGCTGCTCAGCTCTTCCTGCAGACTCTTTTTTCCTGAGAATCCTGTTAA
GATTATCCGAGGCCAAGGGCAGTACTTGTATGATGAGCAAGGGCGAGAGTACCTGGACTGCATC
AACAATGTGGCTCATGTCGGGCACTGCCACCCTACCGTGGTCCAAGCTGCACATGAACAGAACC
TGGTGCTCAACACCAACAGCCGATATCTACATGACAACATCGTGGACTATGCCCAGAGGCTGTC
AGAGACCCTGCCAGAGAAGCTTTCTGTGTTTTATTTCCTGAATTCTGGGTCAGAAGCCAACGAC
CTGGCCTTGAGACTAGCTCGCCAGTACACAGGACACCAGGATGTGGTGGTATTAGACCATGCTT
ATCATGGTCACCTGAGCTCATTGATCGACATCAGTCCCTACAAGTTCCGGAATCTGGATGGCCA
GAAGGAATGGGTCCATGTGGCTCCGCTCCCAGACACCTACCGGGGACCTTACCGGGAGGACCAC
CCCGATCCAGCAGGGGCCTATGCCAGTGAGGTGAAGCATGTCATCAGCAGTGCACAGAAGAAGG
GCAGGAAGATTGCAGCCTTCTTCGCCGAGTCTCTGCCTAGTGTGAGTGGACAGATCATTCCCCC
TGCTGGATACTTCTCCCAGGTGGCGGAGCACATACGCAGAGCCGGAGGGCTCTTTGTGGCTGAT
GAGATCCAGGTTGGTTTTGGCCGAGTAGGCAAACACTTTTGGGCCTTCCAGCTGGAGGGAGAAG
ACTTTGTCCCCGACATTGTCACCATGGGCAAGTCCATCGGCAATGGTCATCCTGTTGCCTGCCT
GGCCACTACCCAAGCTGTGTCAAGGGCATTTGAAGCTACCGGTGTAGAATACTTCAACACGTTT
GGTGGCAATCCTGTGTCCTGTGCTGTGGGGCTAGCAGTCCTGGATGTCTTGAAAACAGAACAGC
TCCAGGCTCATGCCACTAATGTGGGCAGCTTCCTTATGGAGCACCTCAGCCAGCAGAAAGCCAA
ACATCCTATCATTGGAGATGTCAGGGGCACTGGGCTCTTCATTGGTGTGGATCTGATCAAGGAT
GAGACTCTGAGGACACCAGCAACTGAAGAGGCAGAGTATTTGGTCTCCAGGCTAAAGGAAAACT
ACATTTTACTGAGCACTGACGGCCCTGGGAGGAATATCCTGAAGTTCAAGCCTCCAATGTGCTT
CAGCCTTGATAACGCACAGCATGTGGTTGCAAAGCTGGATGACATTCTAACAGACATGGAAGAA
AAAGTACGAAGTTGTGAAACACTGAGGATCAAACACCCTCCAGAAGCCTGACACTTTCCCTGGC
TGGAGAATGGTTTATGAAGTCACAGACTCATGGATCAGAATAAGATGGTACCCCTTTTCAAATT
AACCCTTGTGTTGCTCTGTAATCTGGACTCAACTGGAACTCACAGCCAAACGAGATTGTTTAGC
CACACACTGTATGTCCGGGAAAAGAACTTAAGAATGTGACCCATGATCCCTCACAAGTTTAAAT
CAGCATGACCTGCACAATTGAATCTA

hide sequence

RefSeq Acc Id:

XM_008767651 ⟹ XP_008765873

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	34,938,661 - 34,959,185 (+)	NCBI

Sequence:

show sequence

CGTCTGGTGACTGACTGACCGCTCGGCGCCATGGCCGCGGACCGGCGCGCCAAGGCCGCCACTC
TGGACCTGAGACGTCGGCTGCTCAGCTCTTCCTGCAGACTCTTTTTTCCTGAGAATCCTGTTAA
GATTATCCGAGGCCAAGGGCAGTACTTGTATGATGAGCAAGGGCGAGAGTACCTGGACTGCATC
AACAATGTGGCTCATGTCGGGCACTGCCACCCTACCGTGGTCCAAGCTGCACATGAACAGAACC
TGGTGCTCAACACCAACAGCCGATATCTACATGACAACATCGTGGACTATGCCCAGAGGCTGTC
AGAGACCCTGCCAGAGAAGCTTTCTGTGTTTTATTTCCTGAATTCTGGGTCAGAAGCCAACGAC
CTGGCCTTGAGACTAGCTCGCCAGTACACAGGACACCAGGATGTGGTGGTATTAGACCATGCTT
ATCATGGTCACCTGAGCTCATTGATCGACATCAGTCCCTACAAGTTCCGGAATCTGGATGGCCA
GAAGGAATGGGTCCATGTGGCTCCGCTCCCAGACACCTACCGGGGACCTTACCGGGAGGACCAC
CCCGATCCAGCAGGGGCCTATGCCAGTGAGGTGAAGCATGTCATCAGCAGTGCACAGAAGAAGG
GCAGGAAGATTGCAGCCTTCTTCGCCGAGTCTCTGCCTAGTGTGAGTGGACAGATCATTCCCCC
TGCTGGATACTTCTCCCAGGTGGCGGAGCACATACGCAGAGCCGGAGGGCTCTTTGTGGCTGAT
GAGATCCAGGTTGGTTTTGGCCGAGTAGGCAAACACTTTTGGGCCTTCCAGCTGGAGGGAGAAG
ACTTTGTCCCCGACATTGTCACCATGGGCAAGTCCATCGGCAATGGTCATCCTGTTGCCTGCCT
GGCCACTACCCAAGCTGTGTCAAGGGCATTTGAAGCTACCGGTGTAGAATACTTCAACACGTTT
GGTGGCAATCCTGTGTCCTGTGCTGTGGGGCTAGCAGTCCTGGATGTCTTGAAAACAGAACAGC
TCCAGGCTCATGCCACTAATGTGGGCAGCTTCCTTATGGAGCACCTCAGCCAGCAGAAAGCCAA
ACATCCTATCATTGGAGATGTCAGGGGCACTGGGCTCTTCATTGGTGTGGATCTGATCAAGGAT
GAGACTCTGAGGACACCAGCAACTGAAGAGGCAGAGTATTTGGTCTCCAGGCTAAAGGAAAACT
ACATTTTACTGAGCACTGACGGCCCTGGGAGGAATATCCTGAAGTTCAAGCCTCCAATGTGCTT
CAGCCTTGATAACGCACAGCATGTGGTTGCAAAGCTGGATGACATTCTAACAGAAGATACTCAT
CCTACTCAAATATAACAGGACACCAAGATGACACCCACCTTACAGACAAGTGTGTGAGGCTTCA
CTGGAAGACATACTGCCTGCCACTCTTAAGCAATTATTATTAAGATAGGCTTTATTTCTAAATC
CAAACAAGACCCAGTCAGACTTTTATGCCTGGAAACTTAGAGGGTGTACATGCTTCTAAAGAAT
GTTTTTTTTTTTTCTCGGAGCTGGGGACCGAACCCAGGGCCTTGTGCTTCCTGGGCAAGCTACC
ACTGAGCTAAATCCCCAACCCCCTAAAGAATGTTTTTAAAGACAGTCCTGACATACTCCCACAG
GTAAAAAATGAGCTAGACATGGCACATGCTTTAATCTCATCTCACTGGAAGGTGGAAACAGGCA
GGCAGAACTCTTCCAGTTTGATTGAGACCAGCCTGGTATTAGAGGGAGCACTGGTCCTGCCAGG
GCAGCAGCATGATGCTCTCTCAAAAGGAGGTGGGAAGATGAATTTTATCCCTCCATCAAGCTAT
GCCTTCTGTTGTATCTGAATTAAAGACACTGAATAATTTGAATATTTACTTCTAAGCCCTATCA
GCAGTTTTCACTATCATAGAGGCTTAAGGCTACTACTTCATATTAGGGCCTGCCAAAAAAGTCA
TTGTTCACTAGAATAACTAACAATGTCCCACCCAACTGCCTGCTTTATTTAATCCACAACCCAA
GCTTTTTAAACTTGCATTGAGAATGGGAAGAATCTTCATGGAGCCCCACCCTCCTCATATGGGC
TGCCACTCCAGTTCTCCAGTAAGCTGCATGCAGCCACAGCCAGCCACGCCTTCAATCCTAATCA
ACTTGAAAGCTACCACTCCACTAAACTGACTCCATTTTGAGTTAACAGGATCCCAGTGAGCTCT
TTTTTGGTCTTTACTAGCATTAGGGTTGACTAAAGCAACCTTCCTCTGAAGCAAGAAAAATGTG
TCAGTATAGATGGAAACCTACTACGGGACCCCGTTTCTGGACCTACAGTTCCAGAAAACTGTCT
TCTATTATTAAGACCACTGCTAACCCCTGAACAACCCCTAATACTAAACCAGAAAGCAAAGAAC
CTAGACAACAGCTCTATTCACAAAAGCCAGGCTTTTTTCCCCCTATGCACCTGCTATGTTAGTT
TTTATTATTTAAGTACAGTGTATGGTGCCTACAGAAGCCTCCAAAGAGCATCAGATCCCTTGAA
ATGTGTGGTTATAGGTGGTTGTGAGCCACTCACTGTGGTTGTTAGGAACAGACCAGAGTCCTCC
TGAAGAGCCAACCACTGCGCTAGCTGTTTCCAACCCGACATTTCTTAAGGGCCAGACCATCTAC
TTTAATCAGCATTGTGTCTGGTGAGAAACAAGGTCTTGCTGACCTAGAAGGATCTCACAGGTAG
TCTAACCTCATCTATACCTCCAAGAGCCAAAAGCAGATGACAGTTTGACACCTTACCTTGCTAC
CACTGACAGTATGGAATTTTTTCTCCAGAACTTTCTTCACAGGGTCTTCCTCTTTAAATGTAAT
AAAAACAAAACCCCGTCTTTTGTTCAA

hide sequence

RefSeq Acc Id:

XM_008767652 ⟹ XP_008765874

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	34,938,661 - 34,960,661 (+)	NCBI

Sequence:

show sequence

CGTCTGGTGACTGACTGACCGCTCGGCGCCATGGCCGCGGACCGGCGCGCCAAGGCCGCCACTC
TGGACCTGAGACGTCGGCTGCTCAGCTCTTCCTGCAGACTCTTTTTTCCTGAGAATCCTGTTAA
GATTATCCGAGGCCAAGGGCAGTACTTGTATGATGAGCAAGGGCGAGAGTACCTGGACTGCATC
AACAATGTGGCTCATGTCGGGCACTGCCACCCTACCGTGGTCCAAGCTGCACATGAACAGAACC
TGGTGCTCAACACCAACAGCCGATATCTACATGACAACATCGTGGACTATGCCCAGAGGCTGTC
AGAGACCCTGCCAGAGAAGCTTTCTGTGTTTTATTTCCTGAATTCTGGGTCAGAAGCCAACGAC
CTGGCCTTGAGACTAGCTCGCCAGTACACAGGACACCAGGATGTGGTGGTATTAGACCATGCTT
ATCATGGTCACCTGAGCTCATTGATCGACATCAGTCCCTACAAGTTCCGGAATCTGGATGGCCA
GAAGGAATGGGTCCATGTGGCTCCGCTCCCAGACACCTACCGGGGACCTTACCGGGAGGACCAC
CCCGATCCAGCAGGGGCCTATGCCAGTGAGGTGAAGCATGTCATCAGCAGTGCACAGAAGAAGG
GCAGGAAGATTGCAGCCTTCTTCGCCGAGTCTCTGCCTAGTGTGAGTGGACAGATCATTCCCCC
TGCTGGATACTTCTCCCAGGTGGCGGAGCACATACGCAGAGCCGGAGGGCTCTTTGTGGCTGAT
GAGATCCAGGTTGGTTTTGGCCGAGTAGGCAAACACTTTTGGGCCTTCCAGCTGGAGGGAGAAG
ACTTTGTCCCCGACATTGTCACCATGGGCAAGTCCATCGGCAATGGTCATCCTGTTGCCTGCCT
GGCCACTACCCAAGCTGTGTCAAGGGCATTTGAAGCTACCGGTGTAGAATACTTCAACACGTTT
GGTGGCAATCCTGTGTCCTGTGCTGTGGGGCTAGCAGTCCTGGATGTCTTGAAAACAGAACAGC
TCCAGGCTCATGCCACTAATGTGGGCAGCTTCCTTATGGAGCACCTCAGCCAGCAGAAAGCCAA
ACATCCTATCATTGGAGATGTCAGGGGCACTGGGCTCTTCATTGGTGTGGATCTGATCAAGGAT
GAGACTCTGAGGACACCAGCAACTGAAGAGGCAGAGTATTTGGTCTCCAGGCTAAAGGAAAACT
ACATTTTACTGAGCACTGACGGCCCTGGGAGGAATATCCTGAAGTTCAAGCCTCCAATGTGCTT
CAGCCTTGATAACGCACAGCATGTGGTTGCAAAGCTGGATGACATTCTAACAGAAGCCTGACAC
TTTCCCTGGCTGGAGAATGGTTTATGAAGTCACAGACTCATGGATCAGAATAAGATGGTACCCC
TTTTCAAATTAACCCTTGTGTTGCTCTGTAATCTGGACTCAACTGGAACTCACAGCCAAACGAG
ATTGTTTAGCCACACACTGTATGTCCGGGAAAAGAACTTAAGAATGTGACCCATGATCCCTCAC
AAGTTTAAATCAGCATGACCTGCACAATTGAATCTA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001121668	(Get FASTA)	NCBI Sequence Viewer
	XP_008765869	(Get FASTA)	NCBI Sequence Viewer
	XP_008765870	(Get FASTA)	NCBI Sequence Viewer
	XP_008765871	(Get FASTA)	NCBI Sequence Viewer
	XP_008765872	(Get FASTA)	NCBI Sequence Viewer
	XP_008765873	(Get FASTA)	NCBI Sequence Viewer
	XP_008765874	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI58767	(Get FASTA)	NCBI Sequence Viewer
	EDM04312	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001121668 ⟸ NM_001128196

- UniProtKB:

B0BNC4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAADRRAKAATLDLRRRLLSSSCRLFFPENPVKIIRGQGQYLYDEQGREYLDCINNVAHVGHCH
PTVVQAAHEQNLVLNTNSRYLHDNIVDYAQRLSETLPEKLSVFYFLNSGSEANDLALRLARQYT
GHQDVVVLDHAYHGHLSSLIDISPYKFRNLDGQKAPLPDTYRGPYREDHPDPAGAYASEVKHVI
SSAQKKGRKIAAFFAESLPSVSGQIIPPAGYFSQVAEHIRRAGGLFVADEIQVGFGRVGKHFWA
FQLEGEDFVPDIVTMGKSIGNGHPVACLATTQAVSRAFEATGVEYFNTFGGNPVSCAVGLAVLD
VLKTEQLQAHATNVGSFLMEHLSQQKAKHPIIGDVRGTGLFIGVDLIKDETLRTPATEEAEYLV
SRLKENYILLSTDGPGRNILKFKPPMCFSLDNAQHVVAKLDDILTDMEEKVRSCETLRIKHPPG
STGPGCRAAAGSRPSNLEQGNLVIKSAP

hide sequence

RefSeq Acc Id:

XP_008765872 ⟸ XM_008767650

- Peptide Label:

isoform X4

- Sequence:

show sequence

MAADRRAKAATLDLRRRLLSSSCRLFFPENPVKIIRGQGQYLYDEQGREYLDCINNVAHVGHCH
PTVVQAAHEQNLVLNTNSRYLHDNIVDYAQRLSETLPEKLSVFYFLNSGSEANDLALRLARQYT
GHQDVVVLDHAYHGHLSSLIDISPYKFRNLDGQKEWVHVAPLPDTYRGPYREDHPDPAGAYASE
VKHVISSAQKKGRKIAAFFAESLPSVSGQIIPPAGYFSQVAEHIRRAGGLFVADEIQVGFGRVG
KHFWAFQLEGEDFVPDIVTMGKSIGNGHPVACLATTQAVSRAFEATGVEYFNTFGGNPVSCAVG
LAVLDVLKTEQLQAHATNVGSFLMEHLSQQKAKHPIIGDVRGTGLFIGVDLIKDETLRTPATEE
AEYLVSRLKENYILLSTDGPGRNILKFKPPMCFSLDNAQHVVAKLDDILTDMEEKVRSCETLRI
KHPPEA

hide sequence

RefSeq Acc Id:

XP_008765874 ⟸ XM_008767652

- Peptide Label:

isoform X6

- Sequence:

show sequence

MAADRRAKAATLDLRRRLLSSSCRLFFPENPVKIIRGQGQYLYDEQGREYLDCINNVAHVGHCH
PTVVQAAHEQNLVLNTNSRYLHDNIVDYAQRLSETLPEKLSVFYFLNSGSEANDLALRLARQYT
GHQDVVVLDHAYHGHLSSLIDISPYKFRNLDGQKEWVHVAPLPDTYRGPYREDHPDPAGAYASE
VKHVISSAQKKGRKIAAFFAESLPSVSGQIIPPAGYFSQVAEHIRRAGGLFVADEIQVGFGRVG
KHFWAFQLEGEDFVPDIVTMGKSIGNGHPVACLATTQAVSRAFEATGVEYFNTFGGNPVSCAVG
LAVLDVLKTEQLQAHATNVGSFLMEHLSQQKAKHPIIGDVRGTGLFIGVDLIKDETLRTPATEE
AEYLVSRLKENYILLSTDGPGRNILKFKPPMCFSLDNAQHVVAKLDDILTEA

hide sequence

RefSeq Acc Id:

XP_008765871 ⟸ XM_008767649

- Peptide Label:

isoform X3

- Sequence:

show sequence

MAADRRAKAATLDLRRRLLSSSCRLFFPENPVKIIRGQGQYLYDEQGREYLDCINNVAHVGHCH
PTVVQAAHEQNLVLNTNSRYLHDNIVDYAQRLSETLPEKLSVFYFLNSGSEANDLALRLARQYT
GHQDVVVLDHAYHGHLSSLIDISPYKFRNLDGQKEWVHVAPLPDTYRGPYREDHPDPAGAYASE
VKHVISSAQKKGRKIAAFFAESLPSVSGQIIPPAGYFSQVAEHIRRAGGLFVADEIQVGFGRVG
KHFWAFQLEGEDFVPDIVTMGKSIGNGHPVACLATTQAVSRAFEATGVEYFNTFGGNPVSCAVG
LAVLDVLKTEQLQAHATNVGSFLMEHLSQQKAKHPIIGDVRGTGLFIGVDLIKDETLRTPATEE
AEYLVSRLKENYILLSTDGPGRNILKFKPPMCFSLDNAQHVVAKLDDILTDMEEKVRSCETLRI
KHPPGI

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RefSeq Acc Id:	XP_008765870 ⟸ XM_008767648
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2KB65 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAADRRAKAATLDLRRRLLSSSCRLFFPENPVKIIRGQGQYLYDEQGREYLDCINNVAHVGHCH PTVVQAAHEQNLVLNTNSRYLHDNIVDYAQRLSETLPEKLSVFYFLNSGSEANDLALRLARQYT GHQDVVVLDHAYHGHLSSLIDISPYKFRNLDGQKEWVHVAPLPDTYRGPYREDHPDPAGAYASE VKHVISSAQKKGRKIAAFFAESLPSVSGQIIPPAGYFSQVAEHIRRAGGLFVADEIQVGFGRVG KHFWAFQLEGEDFVPDIVTMGKSIGNGHPVACLATTQAVSRAFEATGVEYFNTFGGNPVSCAVG LAVLDVLKTEQLQAHATNVGSFLMEHLSQQKAKHPIIGDVRGTGLFIGVDLIKDETLRTPATEE AEYLVSRLKENYILLSTDGPGRNILKFKPPMCFSLDNAQHVVAKLDDILTDMEEKVRSCETLRI KHPPEDTHPTQI hide sequence

RefSeq Acc Id:

XP_008765873 ⟸ XM_008767651

- Peptide Label:

isoform X5

- Sequence:

show sequence

MAADRRAKAATLDLRRRLLSSSCRLFFPENPVKIIRGQGQYLYDEQGREYLDCINNVAHVGHCH
PTVVQAAHEQNLVLNTNSRYLHDNIVDYAQRLSETLPEKLSVFYFLNSGSEANDLALRLARQYT
GHQDVVVLDHAYHGHLSSLIDISPYKFRNLDGQKEWVHVAPLPDTYRGPYREDHPDPAGAYASE
VKHVISSAQKKGRKIAAFFAESLPSVSGQIIPPAGYFSQVAEHIRRAGGLFVADEIQVGFGRVG
KHFWAFQLEGEDFVPDIVTMGKSIGNGHPVACLATTQAVSRAFEATGVEYFNTFGGNPVSCAVG
LAVLDVLKTEQLQAHATNVGSFLMEHLSQQKAKHPIIGDVRGTGLFIGVDLIKDETLRTPATEE
AEYLVSRLKENYILLSTDGPGRNILKFKPPMCFSLDNAQHVVAKLDDILTEDTHPTQI

hide sequence

RefSeq Acc Id:

XP_008765869 ⟸ XM_008767647

- Peptide Label:

isoform X1

- Sequence:

show sequence

MAADRRAKAATLDLRRRLLSSSCRLFFPENPVKIIRGQGQYLYDEQGREYLDCINNVAHVGHCH
PTVVQAAHEQNLVLNTNSRYLHDNIVDYAQRLSETLPEKLSVFYFLNSGSEANDLALRLARQYT
GHQDVVVLDHAYHGHLSSLIDISPYKFRNLDGQKEWVHVAPLPDTYRGPYREDHPDPAGAYASE
VKHVISSAQKKGRKIAAFFAESLPSVSGQIIPPAGYFSQVAEHIRRAGGLFVADEIQVGFGRVG
KHFWAFQLEGEDFVPDIVTMGKSIGNGHPVACLATTQAVSRAFEATGVEYFNTFGGNPVSCAVG
LAVLDVLKTEQLQAHATNVGSFLMEHLSQQKAKHPIIGDVRGTGLFIGVDLIKDETLRTPATEE
AEYLVSRLKENYILLSTDGPGRNILKFKPPMCFSLDNAQHVVAKLDDILTDMEEKVRSCETLRI
KHPPGSTGPGCRAAAGSRPSNLEQGNLVIKSAP

hide sequence

RefSeq Acc Id:

ENSRNOP00000071887 ⟸ ENSRNOT00000086443

RefSeq Acc Id:

ENSRNOP00000055878 ⟸ ENSRNOT00000059104

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:2293818	AgrOrtholog
Ensembl Genes	ENSRNOG00000047933	UniProtKB/TrEMBL
	ENSRNOG00000048357	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000036405	UniProtKB/TrEMBL
	ENSRNOP00000055878	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOP00000071887	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOP00000075670	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000037303	UniProtKB/TrEMBL
	ENSRNOT00000059104	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOT00000086443	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOT00000091242	UniProtKB/TrEMBL
Gene3D-CATH	3.40.640.10	UniProtKB/TrEMBL
	3.90.1150.10	UniProtKB/TrEMBL
InterPro	Aminotrans_3	UniProtKB/TrEMBL
	PyrdxlP-dep_Trfase_major	UniProtKB/TrEMBL
	PyrdxlP-dep_Trfase_major_dom	UniProtKB/TrEMBL
	PyrdxlP-dep_Trfase_major_sub2	UniProtKB/TrEMBL
KEGG Report	rno:100169747	UniProtKB/TrEMBL
	rno:103690164	UniProtKB/TrEMBL
NCBI Gene	100169747	ENTREZGENE
Pfam	Aminotran_3	UniProtKB/TrEMBL
PhenoGen	Phykpl	PhenoGen
PIRSF	Transaminase_4ab_Lys_Orn	UniProtKB/TrEMBL
PROSITE	AA_TRANSFER_CLASS_3	UniProtKB/TrEMBL
Superfamily-SCOP	PyrdxlP-dep_Trfase_major	UniProtKB/TrEMBL
UniProt	A0A0G2KB65	ENTREZGENE, UniProtKB/TrEMBL
	B0BNC4	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	D3ZFL7	UniProtKB/TrEMBL
	F1LMP4	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-06-19	Phykpl	5-phosphohydroxy-L-lysine phospho-lyase	Agxt2l2	alanine-glyoxylate aminotransferase 2-like 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-06-13	Agxt2l2	alanine-glyoxylate aminotransferase 2-like 2			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM