Ublcp1 (ubiquitin-like domain containing CTD phosphatase 1) - Rat Genome Database

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Gene: Ublcp1 (ubiquitin-like domain containing CTD phosphatase 1) Rattus norvegicus
Analyze
Symbol: Ublcp1
Name: ubiquitin-like domain containing CTD phosphatase 1
RGD ID: 1310386
Description: Predicted to enable proteasome regulatory particle binding activity and protein serine/threonine phosphatase activity. Predicted to be involved in negative regulation of ATP-dependent activity and regulation of proteasome assembly. Predicted to be located in nucleolus and nucleoplasm. Predicted to be active in nucleus. Orthologous to human UBLCP1 (ubiquitin like domain containing CTD phosphatase 1); INTERACTS WITH 2,4-dinitrotoluene; 2,6-dinitrotoluene; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC360514; MGC105972; nuclear proteasome inhibitor UBLCP1; RGD1310386; similar to hypothetical protein MGC10067; ubiquitin-like domain-containing CTD phosphatase 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81029,447,081 - 29,462,446 (-)NCBIGRCr8
mRatBN7.21028,945,690 - 28,961,103 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1028,945,698 - 28,960,996 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1033,690,046 - 33,705,356 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0102,228,449 - 2,243,759 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01028,660,657 - 28,675,967 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01030,103,607 - 30,118,945 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1030,103,613 - 30,118,873 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01029,936,811 - 29,952,143 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41029,612,055 - 29,627,325 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11029,613,103 - 29,628,374 (-)NCBI
Celera1028,424,577 - 28,439,847 (-)NCBICelera
Cytogenetic Map10q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:15489334   PMID:21949367  


Genomics

Comparative Map Data
Ublcp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81029,447,081 - 29,462,446 (-)NCBIGRCr8
mRatBN7.21028,945,690 - 28,961,103 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1028,945,698 - 28,960,996 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1033,690,046 - 33,705,356 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0102,228,449 - 2,243,759 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01028,660,657 - 28,675,967 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01030,103,607 - 30,118,945 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1030,103,613 - 30,118,873 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01029,936,811 - 29,952,143 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41029,612,055 - 29,627,325 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11029,613,103 - 29,628,374 (-)NCBI
Celera1028,424,577 - 28,439,847 (-)NCBICelera
Cytogenetic Map10q21NCBI
UBLCP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385159,263,290 - 159,286,036 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5159,263,290 - 159,286,036 (+)EnsemblGRCh38hg38GRCh38
GRCh375158,690,298 - 158,713,044 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365158,622,876 - 158,645,617 (+)NCBINCBI36Build 36hg18NCBI36
Celera5154,720,940 - 154,743,899 (+)NCBICelera
Cytogenetic Map5q33.3NCBI
HuRef5153,784,215 - 153,807,159 (+)NCBIHuRef
CHM1_15158,122,533 - 158,145,488 (+)NCBICHM1_1
T2T-CHM13v2.05159,791,779 - 159,814,534 (+)NCBIT2T-CHM13v2.0
Ublcp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391144,345,398 - 44,361,540 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1144,345,398 - 44,361,325 (-)EnsemblGRCm39 Ensembl
GRCm381144,454,571 - 44,470,713 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1144,454,571 - 44,470,498 (-)EnsemblGRCm38mm10GRCm38
MGSCv371144,268,073 - 44,284,050 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361144,297,996 - 44,313,868 (-)NCBIMGSCv36mm8
Celera1117,009,149 - 17,013,836 (-)NCBICelera
Cytogenetic Map11B1.1NCBI
cM Map1125.94NCBI
Ublcp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540813,259,328 - 13,279,574 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540813,259,328 - 13,279,509 (+)NCBIChiLan1.0ChiLan1.0
UBLCP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24154,449,198 - 154,472,275 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15152,588,746 - 152,611,827 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05154,655,018 - 154,677,794 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15161,271,839 - 161,294,639 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5161,271,844 - 161,294,643 (+)Ensemblpanpan1.1panPan2
UBLCP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1451,218,471 - 51,237,661 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl451,218,928 - 51,234,198 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha451,111,527 - 51,130,760 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0451,653,336 - 51,672,559 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl451,653,332 - 51,672,583 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1451,482,378 - 51,501,638 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0451,587,989 - 51,607,229 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0452,104,659 - 52,123,934 (-)NCBIUU_Cfam_GSD_1.0
Ublcp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213105,643,923 - 105,662,457 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365154,096,146 - 4,112,234 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365154,093,255 - 4,111,616 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBLCP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1664,178,941 - 64,205,675 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11664,182,918 - 64,205,684 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21670,006,436 - 70,029,004 (+)NCBISscrofa10.2Sscrofa10.2susScr3
UBLCP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12361,664,467 - 61,686,874 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2361,664,677 - 61,687,433 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603415,933,584 - 15,955,836 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ublcp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473330,179,102 - 30,201,768 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473330,166,045 - 30,202,081 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ublcp1
57 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:167
Count of miRNA genes:121
Interacting mature miRNAs:137
Transcripts:ENSRNOT00000006063
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
6893352Bw100Body weight QTL 1000.330.6body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
9589136Insul27Insulin level QTL 2710.460.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)101147401056474010Rat
631564Apr3Acute phase response QTL 33.9blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)101527595560275955Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
724556Pur2Proteinuria QTL 25.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)102242750090627625Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10538701450387014Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10538701450387014Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
1354587Kidm21Kidney mass QTL 213.3kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)101502851360430477Rat
6893350Bw99Body weight QTL 990.870.16body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10637574651375746Rat
70224Eae3Experimental allergic encephalomyelitis QTL 34.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)102652195761345413Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135225947Rat
7387235Uae41Urinary albumin excretion QTL 415.260.1874urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)10129497586Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)10580199062146030Rat
2298480Eau7Experimental allergic uveoretinitis QTL 70.0049uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)102795762634490668Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10538701450387014Rat
1554317Bmd4Bone mineral density QTL 49.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)101981604299406971Rat
1598852Anxrr19Anxiety related response QTL 195.07body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)101816784163167841Rat
2313087Bmd80Bone mineral density QTL 803.20.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)101960648364606483Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138328221Rat
1581497Esta1Estrogen-induced thymic atrophy QTL 1thymus mass (VT:0004954)thymus wet weight (CMO:0000855)102132980561345413Rat
631531Iresp2Immunoglobin response QTL26.3blood immunoglobulin E amount (VT:0002492)serum immunoglobulin E level (CMO:0002101)102291826836400810Rat
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
724527Bp148Blood pressure QTL 1480.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102845313673453136Rat
631532Cm50Cardiac mass QTL 506.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)101790711351786432Rat
2300171Bmd58Bone mineral density QTL 584.90.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)102694462871944628Rat
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142315980Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1600371Mcs21Mammary carcinoma susceptibility QTL 213mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)102887565052200160Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101448701189062041Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
9590268Scort13Serum corticosterone level QTL 133.260.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
9590310Scort19Serum corticosterone level QTL 196.30.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
10402859Bp381Blood pressure QTL 3810.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102760646872606468Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
2292441Bp308Blood pressure QTL 308arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102760646872606468Rat
2313055Bw96Body weight QTL 963.60.0001body mass (VT:0001259)body weight (CMO:0000012)101960648364606483Rat
631542Bp82Blood pressure QTL 826.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102652195798952741Rat

Markers in Region
RH128834  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2122,182,086 - 2,182,296 (-)MAPPERmRatBN7.2
mRatBN7.21028,945,764 - 28,945,972 (+)MAPPERmRatBN7.2
Rnor_6.01030,103,682 - 30,103,889NCBIRnor6.0
Rnor_6.0123,558,005 - 3,558,214NCBIRnor6.0
Rnor_5.0125,700,413 - 5,700,622UniSTSRnor5.0
Rnor_5.01029,936,886 - 29,937,093UniSTSRnor5.0
RGSC_v3.41029,612,128 - 29,612,335UniSTSRGSC3.4
RGSC_v3.4121,987,010 - 1,987,219UniSTSRGSC3.4
Celera124,023,052 - 4,023,261UniSTS
Celera1028,424,650 - 28,424,857UniSTS
Cytogenetic Map10q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000006063   ⟹   ENSRNOP00000006063
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1028,945,698 - 28,960,996 (-)Ensembl
Rnor_6.0 Ensembl1030,103,613 - 30,118,873 (-)Ensembl
RefSeq Acc Id: NM_001014117   ⟹   NP_001014139
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81029,447,081 - 29,462,386 (-)NCBI
mRatBN7.21028,945,690 - 28,960,996 (-)NCBI
Rnor_6.01030,103,609 - 30,118,879 (-)NCBI
Rnor_5.01029,936,811 - 29,952,143 (-)NCBI
RGSC_v3.41029,612,055 - 29,627,325 (-)RGD
Celera1028,424,577 - 28,439,847 (-)RGD
Sequence:
RefSeq Acc Id: NM_001394310   ⟹   NP_001381239
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81029,447,081 - 29,462,386 (-)NCBI
mRatBN7.21028,945,690 - 28,960,996 (-)NCBI
RefSeq Acc Id: XM_039086295   ⟹   XP_038942223
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81029,456,715 - 29,462,438 (-)NCBI
mRatBN7.21028,955,324 - 28,961,103 (-)NCBI
RefSeq Acc Id: XM_063269326   ⟹   XP_063125396
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81029,447,083 - 29,462,446 (-)NCBI
RefSeq Acc Id: XM_063269327   ⟹   XP_063125397
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81029,447,083 - 29,462,438 (-)NCBI
RefSeq Acc Id: NP_001014139   ⟸   NM_001014117
- Peptide Label: isoform 1
- UniProtKB: Q5FWT7 (UniProtKB/Swiss-Prot),   A6HDP3 (UniProtKB/TrEMBL),   A0A0H2UHC8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000006063   ⟸   ENSRNOT00000006063
RefSeq Acc Id: XP_038942223   ⟸   XM_039086295
- Peptide Label: isoform X3
RefSeq Acc Id: NP_001381239   ⟸   NM_001394310
- Peptide Label: isoform 2
- UniProtKB: A0A0H2UHC8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125396   ⟸   XM_063269326
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063125397   ⟸   XM_063269327
- Peptide Label: isoform X2
Protein Domains
FCP1 homology   Ubiquitin-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5FWT7-F1-model_v2 AlphaFold Q5FWT7 1-318 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13697120
Promoter ID:EPDNEW_R7644
Type:initiation region
Name:Ublcp1_1
Description:ubiquitin-like domain containing CTD phosphatase 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01030,118,912 - 30,118,972EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310386 AgrOrtholog
BioCyc Gene G2FUF-25403 BioCyc
Ensembl Genes ENSRNOG00000004477 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055019224 UniProtKB/Swiss-Prot
  ENSRNOG00060020378 UniProtKB/Swiss-Prot
  ENSRNOG00065001261 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000006063 UniProtKB/TrEMBL
  ENSRNOT00000006063.8 UniProtKB/Swiss-Prot
  ENSRNOT00055032795 UniProtKB/Swiss-Prot
  ENSRNOT00060035284 UniProtKB/Swiss-Prot
  ENSRNOT00065001677 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.50.1000 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7302690 IMAGE-MGC_LOAD
InterPro FCP1_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HAD-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HAD-SF_hydro_IIID UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HAD_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ub-like_CTD_phosphatase1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ubiquitin-like_dom UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ubiquitin_dom UniProtKB/Swiss-Prot
KEGG Report rno:360514 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:105972 IMAGE-MGC_LOAD
NCBI Gene 360514 ENTREZGENE
PANTHER UBIQUITIN-LIKE DOMAIN-CONTAINING CTD PHOSPHATASE 1 UniProtKB/Swiss-Prot
  UBIQUITIN-LIKE DOMAIN-CONTAINING CTD PHOSPHATASE 1 UniProtKB/Swiss-Prot
  UBIQUITIN-LIKE DOMAIN-CONTAINING CTD PHOSPHATASE 1 UniProtKB/TrEMBL
  UBIQUITIN-LIKE DOMAIN-CONTAINING CTD PHOSPHATASE 1 UniProtKB/TrEMBL
Pfam NIF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ubiquitin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ublcp1 PhenoGen
PROSITE FCP1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBIQUITIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000004477 RatGTEx
  ENSRNOG00055019224 RatGTEx
  ENSRNOG00060020378 RatGTEx
  ENSRNOG00065001261 RatGTEx
SMART CPDc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBQ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54236 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF56784 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0H2UHC8 ENTREZGENE, UniProtKB/TrEMBL
  A6HDP3 ENTREZGENE, UniProtKB/TrEMBL
  Q5FWT7 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Ublcp1  ubiquitin-like domain containing CTD phosphatase 1  RGD1310386  similar to hypothetical protein MGC10067  Symbol and Name updated 1299863 APPROVED
2005-12-06 RGD1310386  similar to hypothetical protein MGC10067  RGD1310386_predicted  similar to hypothetical protein MGC10067 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1310386_predicted  similar to hypothetical protein MGC10067 (predicted)  LOC360514_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC360514_predicted  similar to hypothetical protein MGC10067 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL