LOC120095382 (U7 small nuclear RNA) - Rat Genome Database

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Gene: LOC120095382 (U7 small nuclear RNA) Rattus norvegicus
Analyze
Symbol: LOC120095382
Name: U7 small nuclear RNA
RGD ID: 41272198
Description:
Type: snrna
RefSeq Status: MODEL
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8102,685,182 - 2,685,246 (+)NCBIGRCr8
mRatBN7.2102,178,128 - 2,178,192 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl102,178,128 - 2,178,192 (+)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map10q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138328221Rat
634329Pia15Pristane induced arthritis QTL 153.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10124158324Rat
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142315980Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135225947Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005490859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000087682
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl102,178,128 - 2,178,192 (+)Ensembl
RefSeq Acc Id: XR_005490859
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8102,685,182 - 2,685,246 (+)NCBI
mRatBN7.2102,178,128 - 2,178,192 (+)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-26203 BioCyc
Ensembl Genes ENSRNOG00000069686 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000087682 ENTREZGENE
NCBI Gene LOC120095382 ENTREZGENE
PhenoGen LOC120095382 PhenoGen
RatGTEx ENSRNOG00000069686 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-27 LOC120095382  U7 small nuclear RNA      Symbol and Name status set to provisional 70820 PROVISIONAL