Gria1 (glutamate ionotropic receptor AMPA type subunit 1) - Rat Genome Database

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Gene: Gria1 (glutamate ionotropic receptor AMPA type subunit 1) Rattus norvegicus
Analyze
Symbol: Gria1
Name: glutamate ionotropic receptor AMPA type subunit 1
RGD ID: 621531
Description: Exhibits several functions, including AMPA glutamate receptor activity; enzyme binding activity; and signaling receptor binding activity. Involved in several processes, including cellular response to organonitrogen compound; long-term memory; and modulation of chemical synaptic transmission. Localizes to several cellular components, including dendrite; endosome membrane; and integral component of plasma membrane. Used to study hyperhomocysteinemia. Biomarker of epilepsy; hepatic encephalopathy; status epilepticus; and visual epilepsy. Orthologous to human GRIA1 (glutamate ionotropic receptor AMPA type subunit 1); PARTICIPATES IN calcium/calmodulin dependent kinase 2 signaling pathway; ephrin - ephrin receptor bidirectional signaling axis; amyotrophic lateral sclerosis pathway; INTERACTS WITH (+)-pilocarpine; (S)-AMPA; 1-(4-methoxybenzyl)-3-(5-nitro-1,3-thiazol-2-yl)urea.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: AMPA-selective glutamate receptor 1; GluA1; gluR-1; gluR-A; gluR-K1; GluR1; glutamate receptor 1; glutamate receptor A; glutamate receptor subunit GluR1; glutamate receptor, ionotropic, AMPA 1; glutamate receptor, ionotropic, AMPA1 (alpha 1)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21041,210,713 - 41,527,283 (+)NCBI
Rnor_6.0 Ensembl1042,614,713 - 42,760,200 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01042,441,723 - 42,760,200 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01042,257,736 - 42,571,220 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41042,613,359 - 42,616,610 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1040,506,762 - 40,822,664 (+)NCBICelera
Cytogenetic Map10q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-pilocarpine  (EXP)
(S)-AMPA  (EXP)
1-(4-methoxybenzyl)-3-(5-nitro-1,3-thiazol-2-yl)urea  (EXP)
1-[3-(dimethylamino)propyl]-1-(4-fluorophenyl)-1,3-dihydro-2-benzofuran-5-carbonitrile  (ISO)
1-bromopropane  (EXP)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,3-Dioxo-6-nitro-7-sulfamoylbenzo(f)quinoxaline  (EXP)
2-methyl-6-(phenylethynyl)pyridine  (EXP)
2-tert-butylhydroquinone  (ISO)
4-[1-hydroxy-2-[4-(phenylmethyl)-1-piperidinyl]propyl]phenol  (EXP)
6-Cyano-7-nitroquinoxaline-2,3-dione  (EXP)
6-propyl-2-thiouracil  (EXP)
8-Br-cAMP  (ISO)
acrylamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
arsenic acid  (EXP)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (EXP)
Bay-K-8644  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzoates  (EXP)
beta-naphthoflavone  (EXP)
bicuculline  (EXP)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
calcium atom  (EXP)
calcium(0)  (EXP)
capsaicin  (EXP)
carbon nanotube  (ISO)
celecoxib  (ISO)
chaetocin  (EXP)
chlorpyrifos  (EXP)
citalopram  (ISO)
Citreoviridin  (ISO)
cocaine  (EXP,ISO)
crocidolite asbestos  (ISO)
cypermethrin  (ISO)
decabromodiphenyl ether  (EXP)
Diacetoxyscirpenol  (ISO)
diarsenic trioxide  (ISO)
diazinon  (EXP)
dichloroacetic acid  (ISO)
dieldrin  (EXP)
domoic acid  (EXP)
dopamine  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
entinostat  (ISO)
ethanol  (EXP,ISO)
excitatory amino acid agonist  (EXP)
flavonoids  (EXP)
fluoxetine  (EXP,ISO)
genistein  (EXP,ISO)
glycine  (EXP)
haloperidol  (EXP)
istradefylline  (EXP)
kainic acid  (EXP,ISO)
ketamine  (ISO)
KN-93  (EXP)
lactacystin  (EXP)
lead diacetate  (ISO)
lead(0)  (EXP,ISO)
lead(2+)  (EXP,ISO)
lithium atom  (EXP)
lithium hydride  (EXP)
maleic acid  (ISO)
methamphetamine  (EXP)
methylmercury chloride  (ISO)
mifepristone  (ISO)
minocycline  (EXP)
morphine  (EXP,ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (EXP)
N-nitrosodiethylamine  (EXP)
nickel atom  (EXP)
nifedipine  (ISO)
ochratoxin A  (EXP)
Ondansetron  (EXP)
paclitaxel  (EXP)
panobinostat  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
pirinixic acid  (ISO)
poly(cytidylic acid)  (EXP)
progesterone  (ISO)
resveratrol  (ISO)
rifampicin  (ISO)
rimonabant  (ISO)
SB 431542  (ISO)
sevoflurane  (ISO)
SL-327  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sulfur dioxide  (EXP)
tadalafil  (ISO)
tetrachloromethane  (EXP)
tetrodotoxin  (EXP)
thioacetamide  (ISO)
titanium dioxide  (ISO)
triazolam  (ISO)
tributylstannane  (EXP)
trichostatin A  (ISO)
urethane  (EXP)
valproic acid  (EXP,ISO)
venlafaxine hydrochloride  (EXP)
vorinostat  (ISO)
WIN 55212-2  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

References

References - curated
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Additional References at PubMed
PMID:1309749   PMID:2168579   PMID:7877986   PMID:8848293   PMID:9405465   PMID:10414981   PMID:10688364   PMID:11340067   PMID:11431570   PMID:11891216   PMID:12050163   PMID:12161022  
PMID:12368290   PMID:12379442   PMID:12507773   PMID:12624270   PMID:12628184   PMID:12676337   PMID:12676339   PMID:12687711   PMID:12849753   PMID:12855351   PMID:12909632   PMID:14555717  
PMID:14596864   PMID:14684464   PMID:14706873   PMID:15001777   PMID:15207857   PMID:15260958   PMID:15601948   PMID:15664178   PMID:15673434   PMID:15746389   PMID:15781472   PMID:15854589  
PMID:15858065   PMID:15883194   PMID:15924137   PMID:16000628   PMID:16091361   PMID:16272153   PMID:16443372   PMID:16485113   PMID:16495937   PMID:16606358   PMID:16794574   PMID:16814779  
PMID:16980545   PMID:17093100   PMID:17187855   PMID:17229826   PMID:17335044   PMID:17360685   PMID:17446041   PMID:17460080   PMID:17472959   PMID:17510319   PMID:17719086   PMID:17854777  
PMID:17873364   PMID:17901379   PMID:17923095   PMID:17976577   PMID:18000827   PMID:18031714   PMID:18065236   PMID:18077682   PMID:18174334   PMID:18289517   PMID:18304748   PMID:18341993  
PMID:18368037   PMID:18403705   PMID:18815255   PMID:18819923   PMID:18829953   PMID:18924138   PMID:18957222   PMID:19013221   PMID:19020286   PMID:19073915   PMID:19077125   PMID:19110036  
PMID:19120442   PMID:19238810   PMID:19258522   PMID:19439609   PMID:19503082   PMID:19563786   PMID:19629758   PMID:19657020   PMID:19773551   PMID:19858198   PMID:19886034   PMID:20051515  
PMID:20131911   PMID:20202754   PMID:20417256   PMID:20418887   PMID:20423831   PMID:20434989   PMID:20463192   PMID:20584904   PMID:20826795   PMID:20869354   PMID:20953906   PMID:20963825  
PMID:21080412   PMID:21143596   PMID:21144999   PMID:21147092   PMID:21170339   PMID:21172611   PMID:21185848   PMID:21220022   PMID:21425350   PMID:21439793   PMID:21461922   PMID:21498562  
PMID:21539895   PMID:21558424   PMID:21564097   PMID:21613507   PMID:21700703   PMID:21795692   PMID:21846932   PMID:21876464   PMID:21878564   PMID:21937801   PMID:22108330   PMID:22223644  
PMID:22302822   PMID:22373567   PMID:22405206   PMID:22470488   PMID:22567428   PMID:22632720   PMID:22980744   PMID:23141062   PMID:23160045   PMID:23277581   PMID:23296627   PMID:23303939  
PMID:23326329   PMID:23375774   PMID:23392471   PMID:23395379   PMID:23460828   PMID:23511975   PMID:23537341   PMID:23545413   PMID:23583340   PMID:23598433   PMID:23676497   PMID:23694703  
PMID:23760273   PMID:23844251   PMID:23884930   PMID:23974710   PMID:24002084   PMID:24023391   PMID:24133208   PMID:24244357   PMID:24259587   PMID:24442866   PMID:24625397   PMID:24966334  
PMID:24983627   PMID:25017011   PMID:25023288   PMID:25126703   PMID:25225098   PMID:25429150   PMID:25472821   PMID:25524891   PMID:25533481   PMID:25609091   PMID:25627107   PMID:25697598  
PMID:25746394   PMID:25753037   PMID:25792422   PMID:25796132   PMID:25918374   PMID:25964356   PMID:26049209   PMID:26055072   PMID:26134564   PMID:26220330   PMID:26260133   PMID:26674878  
PMID:26725511   PMID:26773257   PMID:26839312   PMID:27060412   PMID:27118769   PMID:27601647   PMID:27965425   PMID:28132827   PMID:28263869   PMID:28377502   PMID:28474392   PMID:28630296  
PMID:28875935   PMID:28916629   PMID:29098531   PMID:29107806   PMID:29383693   PMID:29476059   PMID:29490264   PMID:29592780   PMID:30328550   PMID:30575928   PMID:30747310   PMID:30872532  
PMID:31146278   PMID:31283924   PMID:31705923   PMID:31721013   PMID:32162577  


Genomics

Comparative Map Data
Gria1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21041,210,713 - 41,527,283 (+)NCBI
Rnor_6.0 Ensembl1042,614,713 - 42,760,200 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01042,441,723 - 42,760,200 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01042,257,736 - 42,571,220 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41042,613,359 - 42,616,610 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1040,506,762 - 40,822,664 (+)NCBICelera
Cytogenetic Map10q22NCBI
GRIA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl5153,489,615 - 153,813,869 (+)EnsemblGRCh38hg38GRCh38
GRCh385153,490,670 - 153,813,873 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh375152,870,230 - 153,193,429 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365152,850,499 - 153,171,354 (+)NCBINCBI36hg18NCBI36
Build 345152,850,498 - 153,171,354NCBI
Celera5148,945,616 - 149,268,929 (+)NCBI
Cytogenetic Map5q33.2NCBI
HuRef5148,010,721 - 148,334,111 (+)NCBIHuRef
CHM1_15152,302,506 - 152,626,274 (+)NCBICHM1_1
Gria1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391156,902,342 - 57,221,070 (+)NCBIGRCm39mm39
GRCm39 Ensembl1156,902,213 - 57,221,070 (+)Ensembl
GRCm381157,011,571 - 57,330,244 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1157,011,387 - 57,330,244 (+)EnsemblGRCm38mm10GRCm38
MGSCv371156,825,193 - 57,143,746 (+)NCBIGRCm37mm9NCBIm37
MGSCv361156,855,379 - 57,146,439 (+)NCBImm8
Celera1161,935,002 - 62,079,468 (+)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1134.51NCBI
Gria1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554087,912,592 - 8,223,570 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554087,912,223 - 8,226,241 (+)NCBIChiLan1.0ChiLan1.0
GRIA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.15154,877,807 - 155,204,660 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5154,879,080 - 155,204,660 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v05148,879,996 - 149,206,914 (+)NCBIMhudiblu_PPA_v0panPan3
GRIA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1455,801,269 - 56,103,383 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl455,803,296 - 56,103,669 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha455,639,927 - 55,995,772 (-)NCBI
ROS_Cfam_1.0456,183,572 - 56,538,983 (-)NCBI
UMICH_Zoey_3.1456,012,350 - 56,367,654 (-)NCBI
UNSW_CanFamBas_1.0456,111,546 - 56,466,793 (-)NCBI
UU_Cfam_GSD_1.0456,613,928 - 56,969,631 (-)NCBI
Gria1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213110,488,036 - 110,787,054 (-)NCBI
SpeTri2.0NW_0049365158,937,391 - 9,236,438 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GRIA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1669,332,585 - 69,655,380 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11669,332,786 - 69,654,366 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21675,191,970 - 75,275,696 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GRIA1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12355,944,128 - 56,265,748 (+)NCBI
ChlSab1.1 Ensembl2356,101,294 - 56,265,849 (+)Ensembl
Gria1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473335,337,039 - 35,648,184 (-)NCBI

Position Markers
D10Rat126  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01042,716,036 - 42,716,241NCBIRnor6.0
Rnor_5.01042,526,318 - 42,526,523UniSTSRnor5.0
Celera1040,777,431 - 40,777,636UniSTS
RH 3.4 Map10452.9RGD
RH 3.4 Map10452.9UniSTS
RH 2.0 Map10470.1RGD
SHRSP x BN Map1038.6199RGD
FHH x ACI Map1035.9499RGD
D10Rat165  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01042,592,183 - 42,592,397NCBIRnor6.0
Rnor_6.01042,595,412 - 42,595,630NCBIRnor6.0
Rnor_5.01042,408,413 - 42,408,631UniSTSRnor5.0
Celera1040,657,748 - 40,657,974UniSTS
SHRSP x BN Map1038.5499RGD
SHRSP x BN Map1038.5499UniSTS
D10Got68  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01042,649,802 - 42,650,038NCBIRnor6.0
Rnor_5.01042,460,499 - 42,460,735UniSTSRnor5.0
Celera1040,712,729 - 40,712,953UniSTS
RH 3.4 Map10452.9RGD
RH 3.4 Map10452.9UniSTS
X57497  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01042,760,129 - 42,760,244NCBIRnor6.0
Rnor_5.01042,571,149 - 42,571,264UniSTSRnor5.0
Celera1040,822,593 - 40,822,708UniSTS
RH138240  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01042,463,288 - 42,463,438NCBIRnor6.0
Rnor_5.01042,279,301 - 42,279,451UniSTSRnor5.0
RGSC_v3.41042,634,532 - 42,634,682UniSTSRGSC3.4
Celera1040,527,881 - 40,528,031UniSTS
RH 3.4 Map10440.59UniSTS
AU048687  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01042,471,248 - 42,471,471NCBIRnor6.0
Rnor_5.01042,287,261 - 42,287,484UniSTSRnor5.0
RGSC_v3.41042,642,492 - 42,642,715UniSTSRGSC3.4
Celera1040,535,851 - 40,536,104UniSTS
AU049642  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera1040,736,495 - 40,736,651UniSTS
RH143108  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01042,725,552 - 42,725,657NCBIRnor6.0
Rnor_5.01042,535,834 - 42,535,939UniSTSRnor5.0
Celera1040,786,947 - 40,787,052UniSTS
RH 3.4 Map10452.8UniSTS
RH144075  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01042,760,250 - 42,760,440NCBIRnor6.0
Rnor_5.01042,571,270 - 42,571,460UniSTSRnor5.0
Celera1040,822,714 - 40,822,904UniSTS
RH 3.4 Map10452.7UniSTS
BF416798  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01042,472,725 - 42,472,814NCBIRnor6.0
Rnor_5.01042,288,738 - 42,288,827UniSTSRnor5.0
RGSC_v3.41042,643,969 - 42,644,058UniSTSRGSC3.4
Celera1040,537,358 - 40,537,447UniSTS
RH 3.4 Map10441.0UniSTS
BF390153  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01042,449,623 - 42,449,794NCBIRnor6.0
Rnor_5.01042,265,636 - 42,265,807UniSTSRnor5.0
RGSC_v3.41042,621,259 - 42,621,430UniSTSRGSC3.4
Celera1040,514,678 - 40,514,849UniSTS
AU049595  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01042,492,689 - 42,492,906NCBIRnor6.0
Rnor_5.01042,308,480 - 42,308,697UniSTSRnor5.0
RGSC_v3.41042,663,835 - 42,664,052UniSTSRGSC3.4
Celera1040,556,980 - 40,557,203UniSTS
AU049867  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01042,756,267 - 42,756,489NCBIRnor6.0
Rnor_5.01042,567,294 - 42,567,516UniSTSRnor5.0
Celera1040,818,668 - 40,818,890UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142669970Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)10144902893Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1076442166221621Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)10587753664401490Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10622909575983805Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10642907599492409Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10752145052521450Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109841807108540162Rat
9590310Scort19Serum corticosterone level QTL 196.30.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101263951357639513Rat
9590268Scort13Serum corticosterone level QTL 133.260.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101263951357639513Rat
9589136Insul27Insulin level QTL 2710.460.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)101263951357639513Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101482789492423564Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014827894107857673Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014827894110992275Rat
1354587Kidm21Kidney mass QTL 213.3kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)101537547462469074Rat
631564Apr3Acute phase response QTL 33.9blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)101646873661468736Rat
6893350Bw99Body weight QTL 990.870.16body mass (VT:0001259)body weight (CMO:0000012)11712154262121542Rat
6893352Bw100Body weight QTL 1000.330.6body mass (VT:0001259)body weight (CMO:0000012)11712154262121542Rat
631532Cm50Cardiac mass QTL 506.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)101824639453637634Rat
1598852Anxrr19Anxiety related response QTL 195.07body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)101940281464402814Rat
1554317Bmd4Bone mineral density QTL 49.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)1020170031102897474Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102152390683549467Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)12152390690312401Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)12152390690312401Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12152390690312401Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)12152390690312401Rat
70198BpQTLcluster9Blood pressure QTL cluster 92.94arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102152390690312401Rat
1581497Esta1Estrogen-induced thymic atrophy QTL 1thymus mass (VT:0004954)thymus wet weight (CMO:0000855)102170776664648311Rat
724556Pur2Proteinuria QTL 25.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)102290149793886300Rat
1331762Rf40Renal function QTL 403.873kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)102386101566539843Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)1023861015112626471Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1024483076107857673Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1024483076107857673Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1024483076107857673Rat
634329Pia15Pristane induced arthritis QTL 153.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)102488408447487910Rat
70224Eae3Experimental allergic encephalomyelitis QTL 34.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)102723753064648311Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)1027237530101482600Rat
631542Bp82Blood pressure QTL 826.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1027237530102427718Rat
2300171Bmd58Bone mineral density QTL 584.90.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)102878928073789280Rat
1600371Mcs21Mammary carcinoma susceptibility QTL 213mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)103002135454057745Rat
2292441Bp308Blood pressure QTL 308arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)103009990975099909Rat
10402859Bp381Blood pressure QTL 3810.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)103009990975099909Rat
724527Bp148Blood pressure QTL 1480.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)103098380575983805Rat
1576311Pia26Pristane induced arthritis QTL 26joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103191939778343192Rat
1578779Tcas10Tongue tumor susceptibility QTL 103.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)103317903078179030Rat
631557Bp136Blood pressure QTL 1360.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)103334319278343192Rat
1576319Cia29Collagen induced arthritis QTL 29joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103513942480139424Rat
61332Eau3Experimental allergic uveoretinitis QTL 30.004uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)103566946546851407Rat
6893342Cm78Cardiac mass QTL 780.10.88heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)103618592982675365Rat
631552Vetf2Vascular elastic tissue fragility QTL 24.50.0002aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)103618592995845311Rat
1354614Hpcl1Hepatic cholesterol level QTL 13.3liver cholesterol amount (VT:0010498)liver cholesterol level (CMO:0001597)103658437353645194Rat
1358897Stresp6Stress response QTL 64.170.022blood norepinephrine amount (VT:0005663)plasma norepinephrine level (CMO:0001010)103658437366539843Rat
61441Btemp1Thermal response to stress QTL 14body temperature trait (VT:0005535)core body temperature (CMO:0001036)103658456066015527Rat
2317042Aia20Adjuvant induced arthritis QTL 203.38joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)104051404485514044Rat
2317043Aia7Adjuvant induced arthritis QTL 73.82joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)104051404485514044Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1041260363106105607Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1041260363107857673Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1041260363107857673Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:118
Count of miRNA genes:52
Interacting mature miRNAs:55
Transcripts:ENSRNOT00000071615, ENSRNOT00000073148
Prediction methods:Microtar, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 64 2 4
Low 1 31 14 1 15 1 4 4 6 21 15 11 4
Below cutoff 2 12 15 12 3 12 4 7 4 8 22 4

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000071615   ⟹   ENSRNOP00000064722
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1042,618,487 - 42,760,200 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000073148   ⟹   ENSRNOP00000066072
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1042,614,713 - 42,760,129 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000081136   ⟹   ENSRNOP00000074119
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1042,614,713 - 42,760,129 (+)Ensembl
RefSeq Acc Id: NM_031608   ⟹   NP_113796
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21041,210,713 - 41,527,283 (+)NCBI
Rnor_6.01042,441,723 - 42,760,200 (+)NCBI
Rnor_5.01042,257,736 - 42,571,220 (+)NCBI
RGSC_v3.41042,613,359 - 42,616,610 (+)RGD
Celera1040,506,762 - 40,822,664 (+)RGD
Sequence:
Reference Sequences
RefSeq Acc Id: NP_113796   ⟸   NM_031608
- Peptide Label: precursor
- UniProtKB: P19490 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000066072   ⟸   ENSRNOT00000073148
RefSeq Acc Id: ENSRNOP00000074119   ⟸   ENSRNOT00000081136
RefSeq Acc Id: ENSRNOP00000064722   ⟸   ENSRNOT00000071615
Protein Domains
Lig_chan-Glu_bd   PBPe

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621531 AgrOrtholog
Ensembl Genes ENSRNOG00000045816 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000064722 UniProtKB/TrEMBL
  ENSRNOP00000066072 UniProtKB/TrEMBL
  ENSRNOP00000074119 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000071615 UniProtKB/TrEMBL
  ENSRNOT00000073148 UniProtKB/TrEMBL
  ENSRNOT00000081136 ENTREZGENE, UniProtKB/TrEMBL
InterPro ANF_lig-bd_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Glu/Gly-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Iono_rcpt_met UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Iontro_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Peripla_BP_I UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:50592 UniProtKB/Swiss-Prot
NCBI Gene 50592 ENTREZGENE
Pfam ANF_receptor UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Lig_chan UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Lig_chan-Glu_bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Gria1 PhenoGen
PRINTS NMDARECEPTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART Lig_chan-Glu_bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PBPe UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF53822 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2K798_RAT UniProtKB/TrEMBL
  GRIA1_RAT UniProtKB/Swiss-Prot
  M0R5P7_RAT UniProtKB/TrEMBL
  M0R9A7_RAT UniProtKB/TrEMBL
  P19490 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-11 Gria1  glutamate ionotropic receptor AMPA type subunit 1  Gria1  glutamate receptor, ionotropic, AMPA 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-10-24 Gria1  glutamate receptor, ionotropic, AMPA 1  Gria1  glutamate receptor, ionotropic, AMPA1 (alpha 1)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-02-26 Gria1  glutamate receptor, ionotropic, AMPA1 (alpha 1)      Symbol and Name status set to approved 625702 APPROVED
2002-08-07 Gria1  glutamate receptor, ionotropic, AMPA1 (alpha 1)      Symbol and Name status set to provisional 70820 PROVISIONAL