Mrtfb (myocardin related transcription factor B) - Rat Genome Database

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Gene: Mrtfb (myocardin related transcription factor B) Rattus norvegicus
Analyze
Symbol: Mrtfb
Name: myocardin related transcription factor B
RGD ID: 1560833
Description: Predicted to have DNA-binding transcription factor activity; actin binding activity; and transcription coactivator activity. Predicted to be involved in several processes, including animal organ development; generation of neurons; and positive regulation of striated muscle tissue development. Predicted to localize to cytoplasm. Orthologous to human MRTFB (myocardin related transcription factor B); INTERACTS WITH bisphenol A; valproic acid; (-)-epigallocatechin 3-gallate (ortholog).
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOC100912459; LOC497850; LOW QUALITY PROTEIN: MKL/myocardin-like protein 2; MKL/myocardin-like 2; MKL/myocardin-like protein 2; MKL/myocardin-like protein 2-like; MKL1/myocardin like 2; Mkl2; myocardin like 2; myocardin-related transcription factor B; RGD1560833; similar to myocardin-related transcription factor B
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2101,116,315 - 1,278,106 (+)NCBI
Rnor_6.0101,151,163 - 1,273,269 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01011,829,918 - 11,951,270 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera10180,081 - 341,402 (+)NCBICelera
Cytogenetic Map10q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

References - curated
1. RGD automated data pipeline
2. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12397177   PMID:14565952   PMID:15798203   PMID:16204380   PMID:17183527   PMID:17991879   PMID:18945672   PMID:20534669   PMID:21776010   PMID:25468996   PMID:30244496  


Genomics

Comparative Map Data
Mrtfb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2101,116,315 - 1,278,106 (+)NCBI
Rnor_6.0101,151,163 - 1,273,269 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01011,829,918 - 11,951,270 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera10180,081 - 341,402 (+)NCBICelera
Cytogenetic Map10q11NCBI
MRTFB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1614,071,319 - 14,266,773 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl1614,071,321 - 14,266,773 (+)EnsemblGRCh38hg38GRCh38
GRCh381614,071,062 - 14,266,779 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371614,164,919 - 14,360,636 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361614,072,697 - 14,268,131 (+)NCBINCBI36hg18NCBI36
Build 341614,072,696 - 14,268,130NCBI
Celera1614,340,460 - 14,536,766 (+)NCBI
Cytogenetic Map16p13.12NCBI
HuRef1614,082,327 - 14,277,730 (+)NCBIHuRef
CHM1_11614,165,118 - 14,360,620 (+)NCBICHM1_1
Mrtfb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391613,073,913 - 13,235,393 (+)NCBIGRCm39mm39
GRCm39 Ensembl1613,074,345 - 13,235,393 (+)Ensembl
GRCm381613,256,056 - 13,417,529 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1613,256,481 - 13,417,529 (+)EnsemblGRCm38mm10GRCm38
MGSCv371613,256,574 - 13,417,622 (+)NCBIGRCm37mm9NCBIm37
MGSCv361613,272,217 - 13,326,281 (+)NCBImm8
Celera1613,859,728 - 14,019,765 (+)NCBICelera
Cytogenetic Map16A1NCBI
Mrtfb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554424,547,829 - 4,733,724 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554424,542,700 - 4,733,646 (-)NCBIChiLan1.0ChiLan1.0
MRTFB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11614,427,091 - 14,619,198 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1614,493,351 - 14,613,860 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01612,999,165 - 13,195,012 (+)NCBIMhudiblu_PPA_v0panPan3
MRTFB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1628,902,749 - 29,113,448 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl628,918,350 - 29,098,220 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha630,265,501 - 30,476,132 (-)NCBI
ROS_Cfam_1.0629,066,342 - 29,277,006 (-)NCBI
UMICH_Zoey_3.1628,868,907 - 29,079,923 (-)NCBI
UNSW_CanFamBas_1.0628,756,781 - 28,967,376 (-)NCBI
UU_Cfam_GSD_1.0629,174,173 - 29,385,094 (-)NCBI
Mrtfb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344114,317,026 - 114,480,361 (+)NCBI
SpeTri2.0NW_0049365012,414,696 - 2,571,627 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MRTFB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl328,964,754 - 29,167,631 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1328,964,758 - 29,240,125 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
MRTFB
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1513,530,313 - 13,725,359 (+)NCBI
ChlSab1.1 Ensembl513,609,016 - 13,720,022 (+)Ensembl
Mrtfb
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247824,217,620 - 4,416,161 (-)NCBI

Position Markers
RH137809  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2101,192,347 - 1,192,590 (+)MAPPER
Rnor_6.0101,226,185 - 1,226,427NCBIRnor6.0
Rnor_5.01011,904,423 - 11,904,665UniSTSRnor5.0
RGSC_v3.4101,129,248 - 1,129,490UniSTSRGSC3.4
Celera10255,959 - 256,201UniSTS
RH 3.4 Map10518.79UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7387235Uae41Urinary albumin excretion QTL 415.260.1874urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)10129592136Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135538813Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138594330Rat
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142669970Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)10144902893Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1076442166221621Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003752284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006220555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACYVU010000217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_003752284   ⟹   XP_003752332
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera10275,165 - 341,402 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006220555   ⟹   XP_006220617
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera10180,352 - 341,402 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008767454   ⟹   XP_008765676
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0101,245,685 - 1,273,269 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017597563   ⟹   XP_017453052
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0101,151,434 - 1,273,269 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017597564   ⟹   XP_017453053
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0101,158,854 - 1,273,269 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017597565   ⟹   XP_017453054
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0101,151,163 - 1,273,269 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017597566   ⟹   XP_017453055
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0101,210,529 - 1,273,269 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017597567   ⟹   XP_017453056
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0101,151,434 - 1,273,269 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017603982   ⟹   XP_017459471
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera10180,352 - 341,402 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017603983   ⟹   XP_017459472
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera10180,081 - 341,402 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017603984   ⟹   XP_017459473
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera10240,299 - 341,402 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039087007   ⟹   XP_038942935
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2101,116,680 - 1,278,106 (+)NCBI
RefSeq Acc Id: XM_039087008   ⟹   XP_038942936
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2101,116,315 - 1,278,106 (+)NCBI
RefSeq Acc Id: XM_039087009   ⟹   XP_038942937
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2101,116,680 - 1,278,106 (+)NCBI
RefSeq Acc Id: XM_039087010   ⟹   XP_038942938
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2101,116,680 - 1,278,106 (+)NCBI
RefSeq Acc Id: XM_039087011   ⟹   XP_038942939
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2101,211,558 - 1,278,106 (+)NCBI
RefSeq Acc Id: XM_039087012   ⟹   XP_038942940
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2101,116,680 - 1,277,391 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_003752332   ⟸   XM_003752284
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006220617   ⟸   XM_006220555
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_008765676   ⟸   XM_008767454
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017459472   ⟸   XM_017603983
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017459471   ⟸   XM_017603982
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017459473   ⟸   XM_017603984
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017453054   ⟸   XM_017597565
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017453052   ⟸   XM_017597563
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017453056   ⟸   XM_017597567
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017453053   ⟸   XM_017597564
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017453055   ⟸   XM_017597566
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_038942936   ⟸   XM_039087008
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038942937   ⟸   XM_039087009
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038942935   ⟸   XM_039087007
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038942938   ⟸   XM_039087010
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038942940   ⟸   XM_039087012
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038942939   ⟸   XM_039087011
- Peptide Label: isoform X3


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1560833 AgrOrtholog
NCBI Gene 497850 ENTREZGENE
PhenoGen Mrtfb PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Mrtfb  myocardin related transcription factor B  LOC100912459  MKL/myocardin-like protein 2-like  Data Merged 737654 PROVISIONAL
2018-06-29 Mrtfb  myocardin related transcription factor B  Mkl2  MKL1/myocardin like 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2017-04-19 Mkl2  MKL1/myocardin like 2  Mkl2  myocardin like 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-03-29 Mkl2  myocardin like 2  Mkl2  MKL/myocardin-like 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-11-25 Mkl2  MKL/myocardin-like 2  RGD1560833  similar to myocardin-related transcription factor B  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-07-05 LOC100912459  MKL/myocardin-like protein 2-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2012-07-02 RGD1560833  similar to myocardin-related transcription factor B  LOC100362470  MKL/myocardin-like 2  Data Merged 1643240 APPROVED
2010-05-05 LOC100362470  MKL/myocardin-like 2      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 RGD1560833  similar to myocardin-related transcription factor B   RGD1560833_predicted  similar to myocardin-related transcription factor B (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1560833_predicted  similar to myocardin-related transcription factor B (predicted)  LOC497850  similar to myocardin-related transcription factor B  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC497850  similar to myocardin-related transcription factor B      Symbol and Name status set to provisional 70820 PROVISIONAL