Mrtfb (myocardin related transcription factor B) - Rat Genome Database

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Gene: Mrtfb (myocardin related transcription factor B) Chinchilla lanigera
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Symbol: Mrtfb
Name: myocardin related transcription factor B
RGD ID: 8867356
Description: ENCODES a protein that exhibits actin binding (ortholog); DNA-binding transcription factor activity (ortholog); transcription coactivator activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); blood vessel morphogenesis (ortholog); cardiac muscle tissue development (ortholog); ASSOCIATED WITH pervasive developmental disorder (ortholog); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: MKL/myocardin-like 2; MKL/myocardin-like protein 2; MKL1/myocardin like 2; Mkl2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554424,547,829 - 4,733,724 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554424,542,700 - 4,733,646 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References


Genomics

Comparative Map Data
Mrtfb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554424,547,829 - 4,733,724 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554424,542,700 - 4,733,646 (-)NCBIChiLan1.0ChiLan1.0
MRTFB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1614,071,319 - 14,266,773 (+)EnsemblGRCh38hg38GRCh38
GRCh381614,071,062 - 14,266,779 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371614,164,919 - 14,360,636 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361614,072,697 - 14,268,131 (+)NCBINCBI36hg18NCBI36
Build 341614,072,696 - 14,268,130NCBI
Celera1614,340,460 - 14,536,766 (+)NCBI
Cytogenetic Map16p13.12NCBI
HuRef1614,082,327 - 14,277,730 (+)NCBIHuRef
CHM1_11614,165,144 - 14,360,614 (+)NCBICHM1_1
Mrtfb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391613,073,913 - 13,235,393 (+)NCBIGRCm39mm39
GRCm39 Ensembl1613,074,345 - 13,235,393 (+)Ensembl
GRCm381613,256,056 - 13,417,529 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1613,256,481 - 13,417,529 (+)EnsemblGRCm38mm10GRCm38
MGSCv371613,256,574 - 13,417,622 (+)NCBIGRCm37mm9NCBIm37
MGSCv361613,272,217 - 13,326,281 (+)NCBImm8
Celera1613,859,728 - 14,019,765 (+)NCBICelera
Cytogenetic Map16A1NCBI
Mrtfb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2101,116,315 - 1,278,106 (+)NCBImRatBN7.2
Rnor_6.0101,151,163 - 1,273,269 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01011,829,918 - 11,951,270 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera10180,081 - 341,402 (+)NCBICelera
Cytogenetic Map10q11NCBI
MRTFB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11614,427,091 - 14,619,198 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1614,493,351 - 14,613,860 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01612,999,165 - 13,195,012 (+)NCBIMhudiblu_PPA_v0panPan3
MRTFB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1628,902,749 - 29,113,448 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl628,918,350 - 29,098,220 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha630,265,501 - 30,476,132 (-)NCBI
ROS_Cfam_1.0629,066,342 - 29,277,006 (-)NCBI
UMICH_Zoey_3.1628,868,907 - 29,079,923 (-)NCBI
UNSW_CanFamBas_1.0628,756,781 - 28,967,376 (-)NCBI
UU_Cfam_GSD_1.0629,174,173 - 29,385,094 (-)NCBI
Mrtfb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344114,317,026 - 114,480,361 (+)NCBI
SpeTri2.0NW_0049365012,414,696 - 2,571,627 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MRTFB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl328,964,754 - 29,167,631 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1328,964,758 - 29,240,125 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
MRTFB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1513,530,313 - 13,725,359 (+)NCBI
ChlSab1.1 Ensembl513,609,016 - 13,720,022 (+)Ensembl
Vero_WHO_p1.0NW_02366606816,331,363 - 16,528,431 (-)NCBI
Mrtfb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247824,217,620 - 4,416,161 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000018058   ⟹   ENSCLAP00000017880
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554424,547,829 - 4,733,724 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000018059   ⟹   ENSCLAP00000017881
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554424,547,829 - 4,617,051 (-)Ensembl
RefSeq Acc Id: XM_013517824   ⟹   XP_013373278
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554424,542,700 - 4,733,646 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013373278 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013373278   ⟸   XM_013517824
- Sequence:
RefSeq Acc Id: ENSCLAP00000017880   ⟸   ENSCLAT00000018058
RefSeq Acc Id: ENSCLAP00000017881   ⟸   ENSCLAT00000018059


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000012268 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000017880 ENTREZGENE
Ensembl Transcript ENSCLAT00000018058 ENTREZGENE
NCBI Gene Mkl2 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-06-19 Mrtfb  myocardin related transcription factor B  Mkl2  MKL1/myocardin like 2  Symbol and/or name change 5135510 APPROVED
2016-08-03 Mkl2  MKL1/myocardin like 2    MKL/myocardin-like 2  Symbol and/or name change 5135510 APPROVED