Pia15 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Pia15 (Pristane induced arthritis QTL 15) Rattus norvegicus

Symbol: Pia15
Name: Pristane induced arthritis QTL 15
RGD ID: 634329
Also known as: Pia10
Trait: joint integrity trait   (VT:0010548)    
Measurement Type: joint inflammation composite score   (CMO:0000919)    
LOD Score: 3.1
P Value: Not Available
Variance: Not Available
Inheritance Type: dominant
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2101 - 24,158,324RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01024,884,084 - 47,487,910RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01024,738,710 - 47,171,288RGDRnor5.0
RGSC_v3.41024,731,630 - 47,777,990RGDRGSC3.4
RGSC_v3.11024,732,679 - 47,779,039RGD
Cross Type: backcross
Strains Crossed: DA/ZtmRhd E3/ZtmRhd 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition
pristane  (IDA)

Measurement Method

Vertebrate Trait

Rat Strain
DA/ZtmRhd  (IEA)
E3/ZtmRhd  (IEA)

References

Related QTLs

Related QTL Description Reference
Eau7 maps to same region RGD:2296064


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
2510Dnase1deoxyribonuclease 1101149893011505151Rat
68943Cacna1hcalcium voltage-gated channel subunit alpha1 H101439010414448204Rat
3563Rgs11regulator of G-protein signaling 11101522280315231060Rat
3136Myh11myosin heavy chain 1110743364838459Rat
3192Npm1nucleophosmin 1101774151217751626Rat
2751Gspt1G1 to S phase transition 11043625284397215Rat
2782Hba-a1hemoglobin alpha, adult chain 1101533726515338121Rat
619770Marf1meiosis regulator and mRNA stability factor 110888053932760Rat
69333Mslnmesothelin101477194614781382Rat
3112Abcc1ATP binding cassette subfamily C member 110528961655179Rat
619887Rps2ribosomal protein S2101374731613749165Rat
61889MefvMEFV innate immuity regulator, pyrin101178694811796977Rat
61892Eci1enoyl-CoA delta isomerase 1101345671513470061Rat
61845Gfergrowth factor, augmenter of liver regeneration101371848913721782Rat
69272Socs1suppressor of cytokine signaling 11048826514884342Rat
69311Slit3slit guidance ligand 3101957179820156634Rat
2401CrebbpCREB binding protein101133555111461888Rat
71002Decr22,4-dienoyl-CoA reductase 2101510490715113281Rat
3623Sbpspermine binding protein101294603612968439Rat
3066Tpsab1tryptase alpha/beta 1101436039614362811Rat
69294Litaflipopolysaccharide-induced TNF factor1046563084692981Rat
2737Grin2aglutamate ionotropic receptor NMDA type subunit 2A1056306846043341Rat
3765Sstr5somatostatin receptor 5101450686814512946Rat
3779Stk10serine/threonine kinase 10101711786017212065Rat
3885Tnp2transition protein 21048798124880540Rat
2961Kcnmb1potassium calcium-activated channel subfamily M regulatory beta subunit 1101855751018614824Rat
620307Pdpk13-phosphoinositide dependent protein kinase-1101310543513182664Rat
727914Rab40cRab40c, member RAS oncogene family101490092614936165Rat
621393Atp6v0e1ATPase H+ transporting V0 subunit e1101647965616502732Rat
621394Atp6v0cATPase H+ transporting V0 subunit C101319620413202580Rat
628674Zfp597zinc finger protein 597101165316911658843Rat
2907Il9rinterleukin 9 receptor101543170615444144Rat
619811Ntn3netrin 3101323690513240001Rat
620699Rhbdl1rhomboid like 1101485451414858848Rat
727858Npwneuropeptide W101368027513681618Rat
70886Kcnip1potassium voltage-gated channel interacting protein 1101821951918588833Rat
619743Lcp2lymphocyte cytosolic protein 2101864260018689562Rat
708415Carhsp1calcium regulated heat stable protein 11069460366960556Rat
3333Pkd1polycystin 1, transient receptor potential channel interacting101357377913621138Rat
708422Olr1361olfactory receptor 1361101199287011993811Rat
67402Hmox2heme oxygenase 2101079707610831178Rat
69242Mlst8MTOR associated protein, LST8 homolog101349837713504128Rat
61935Pla2g10phospholipase A2, group X1015977611610822Rat
727870Prss21serine protease 21101289982012905612Rat
621591Coro7coronin 7101088029910941001Rat
620532Gabrpgamma-aminobutyric acid type A receptor subunit pi101814303118169595Rat
727970Rhot2ras homolog family member T2101485895414864751Rat
619879Nme3NME/NM23 nucleoside diphosphate kinase 3101391730913918415Rat
620191Caskin1CASK interacting protein 1101351268413533380Rat
708553Thoc6THO complex 6101270005112705411Rat
619813Ciitaclass II, major histocompatibility complex, transactivator1051399475187493Rat
727907Tenm2teneurin transmembrane protein 2102048066221706415Rat
67401Ccnfcyclin F101325307313279140Rat
621200Elobelongin B101284883012853897Rat
620520Nkx2-5NK2 homeobox 5101634042816347004Rat
1304924Eme2essential meiotic structure-specific endonuclease subunit 2101391321613915991Rat
1304934Rpusd1RNA pseudouridine synthase domain containing 1101475131014755213Rat
620890Rab26RAB26, member RAS oncogene family101355339513558063Rat
3065Tpsb2tryptase beta 2101438177914383571Rat
735142Prss30protease, serine, 30101300734113014827Rat
620038Nde1nudE neurodevelopment protein 110839788883946Rat
3106MpgN-methylpurine-DNA glycosylase101539624615402528Rat
2779Haghhydroxyacyl glutathione hydrolase101387488313889527Rat
727975Hcfc1r1host cell factor C1 regulator 1101270513912706852Rat
3730Snnstannin1045729334581606Rat
708577Csap1common salivary protein 1101291036812916336Rat
631355Tpsg1tryptase gamma 1101438635214390258Rat
1304560Fahd1fumarylacetoacetate hydrolase domain containing 1101387353913874978Rat
620897Dusp1dual specificity phosphatase 1101668048916683276Rat
631329Tnfrsf12aTNF receptor superfamily member 12A101270707712709071Rat
620799Bnip1BCL2 interacting protein 1101638687616399124Rat
3908Tsc2TSC complex subunit 2101362113513655773Rat
620859Axin1axin 1101516368415215615Rat
68429Igfalsinsulin-like growth factor binding protein, acid labile subunit101389746813903920Rat
1304601Amdhd2amidohydrolase domain containing 2101318757913196148Rat
621777Stc2stanniocalcin 2101625104616260815Rat
1304900Zfp598zinc finger protein 598101369422413706235Rat
1304902Nlrc3NLR family, CARD domain containing 3101155137811585027Rat
620380Slc9a3r2SLC9A3 regulator 2101366246113672975Rat
1304577Zfp13zinc finger protein 13101261547012623615Rat
1304845Ercc4l1excision repair cross-complementing rodent repair deficiency, complementation group 4-like 110954927983651Rat
2608Fgf18fibroblast growth factor 18101770601117737702Rat
1307802Noxo1NADPH oxidase organizer 1101372147313726061Rat
1305001Rrn3RRN3 homolog, RNA polymerase I transcription factor1021299492165381Rat
1305733Bmerb1bMERB domain containing 11017798341946586Rat
1306315Rpl3lribosomal protein L3-like101375391413764458Rat
1307421Foxi1forkhead box I1101880629218810231Rat
1307522Rnps1RNA binding protein with serine rich domain 1101344551613455858Rat
1304747Adcy9adenylate cyclase 9101113896611262067Rat
1304703Tnfrsf17TNF receptor superfamily member 171043010234306889Rat
1305113Nubp2nucleotide binding protein 2101390322413906928Rat
1305117Jpt2Jupiter microtubule associated homolog 2101396313513983212Rat
1305553Telo2telomere maintenance 2101412049114135729Rat
620948Abat4-aminobutyrate aminotransferase1069966887092835Rat
1305919Zfp213zinc finger protein 213101259236812599296Rat
1304791Bfarbifunctional apoptosis regulator1015520191585040Rat
1306126Antkmtadenine nucleotide translocase lysine methyltransferase101481227414814798Rat
1305434Pkmyt1protein kinase, membrane associated tyrosine/threonine 1101274822112758995Rat
1305622Bod1biorientation of chromosomes in cell division 1101599345415999795Rat
1305623Mrps34mitochondrial ribosomal protein S34101391602413917155Rat
1304990Kctd5potassium channel tetramerization domain containing 5101307921613105197Rat
1305856Prss29serine protease 29101433731514341038Rat
1305823Cep20centrosomal protein 2010714051736826Rat
61836Clcn7chloride voltage-gated channel 7101415175814177130Rat
3926Ube2iubiquitin-conjugating enzyme E2I101427774914294681Rat
1305075Rhbdf1rhomboid 5 homolog 1101540683215419765Rat
1305142Tbl3transducin (beta)-like 3101372612713731340Rat
1306729Bicdl2BICD family like cargo adaptor 2101269161012700049Rat
1306527Dnaja3DnaJ heat shock protein family (Hsp40) member A3101085551010880175Rat
1305164Pdia2protein disulfide isomerase family A, member 2101521582415218937Rat
1307381Jmjd8jumonji domain containing 8101484896514851881Rat
1307773Pgpphosphoglycolate phosphatase101349523213497858Rat
1306564Srlsarcalumenin101103397611078103Rat
1305160Ntan1N-terminal asparagine amidase1021110852126123Rat
1304969Eef2kmteukaryotic elongation factor 2 lysine methyltransferase101033693310349463Rat
3409Prm2protamine 21048763984876834Rat
1307032Linc00514long intergenic non-protein coding RNA 514101272716412748629Rat
1305833Anks3ankyrin repeat and sterile alpha motif domain containing 3101061495310635815Rat
1304803Wdr24WD repeat domain 24101484408914848871Rat
1308329Wwc1WW and C2 domain containing 1102030073520454393Rat
1310880Prss22serine protease 22101302915313033863Rat
1333497Olr1354-psolfactory receptor pseudogene 1354101189998611900687Rat
1308952Rab11fip3RAB11 family interacting protein 3101500265015086382Rat
1309748RGD1309748similar to CG4768-PA1067460376774992Rat
1310180Lmf1lipase maturation factor 1101459772614684071Rat
1333960Olr1364olfactory receptor 1364101204598812046950Rat
1333197Olr1377-psolfactory receptor pseudogene 1377101237047712371373Rat
1333149Olr1382olfactory receptor 1382101252362412524565Rat
1333212Olr1375olfactory receptor 1375101230407312305014Rat
1359364Hba-a2hemoglobin alpha, adult chain 2101532383015324677Rat
1359189Cluap1clusterin associated protein 1101158796311619711Rat
1333926Olr1380olfactory receptor 1380101243717512438116Rat
1332671Olr1373olfactory receptor 1373101226310912264050Rat
1333581Olr1358olfactory receptor 1358101184364811844589Rat
1311905Prss32protease, serine, 32101288250412888600Rat
1308357Tfap4transcription factor AP-4101100133811019386Rat
1332609Olr1357-psolfactory receptor pseudogene 1357101182275811823720Rat
1332786Olr1378olfactory receptor 1378101239168212392620Rat
1333630Olr1372olfactory receptor 1372101222744612232048Rat
1310862CrebrfCREB3 regulatory factor101639917016479650Rat
1311862Mgrn1mahogunin ring finger 1101063888110688332Rat
1359209Hba-a3hemoglobin alpha, adult chain 3101531163715312481Rat
1333322Olr1363-psolfactory receptor pseudogene 1363101204267912043341Rat
1310922Snrnp25small nuclear ribonucleoprotein U11/U12 subunit 25101542048215423806Rat
1310782Ndufb10NADH:ubiquinone oxidoreductase subunit B10101374927313751434Rat
1311582Ubn1ubinuclein 1101049657610532010Rat
1310739ArhgdigRho GDP dissociation inhibitor gamma101521904915221257Rat
1310745Zscan10zinc finger and SCAN domain containing 10101263630212646275Rat
1311433Mettl22methyltransferase like 221071136027130715Rat
1311343RGD1311343similar to RIKEN cDNA 4930524B15101568052515694014Rat
1311484Fam234afamily with sequence similarity 234, member A101523226715263529Rat
1310473Chtf18chromosome transmission fidelity factor 18101474300614751044Rat
1308999Cldn9claudin 9101271413712715568Rat
1309121Fbxw11F-box and WD repeat domain containing 11101723273517330584Rat
1308665Nprl3NPR3-like, GATOR1 complex subunit101535536115395812Rat
1311451Nmral1NmrA like redox sensor 1101084169310850199Rat
1306908Spdl1spindle apparatus coiled-coil protein 1101926912519294213Rat
1306915Usp7ubiquitin specific peptidase 71068806846925033Rat
1306167Stub1STIP1 homology and U-box containing protein 1101485076514853046Rat
1309215Rars1arginyl-tRNA synthetase 1102027074420295192Rat
1309459Glyr1glyoxylate reductase 1 homolog101053203610567639Rat
1309385Flywch1FLYWCH-type zinc finger 1101277464412794373Rat
1306514Capn15calpain 15101497280714999411Rat
1310700Alg1ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase101034654110356779Rat
1307081Tekt5tektin 51052798935316565Rat
1309926Sh3pxd2bSH3 and PX domains 2B101691861117027499Rat
1309366Pmm2phosphomannomutase 21069615216982913Rat
1307538Txndc11thioredoxin domain containing 111045154574572999Rat
1307542Luc7lLUC7-like101527334015307131Rat
1307301Zfp263zinc finger protein 263101176442411774330Rat
1308298Mmp25matrix metallopeptidase 25101266129712676119Rat
1306222Metrnmeteorin, glial cell differentiation regulator101481668414818702Rat
1309289Nthl1nth-like DNA glycosylase 1101365579113661958Rat
1309302Rnf151ring finger protein 151101374268213747192Rat
1306667Prss34protease, serine, 34101431591314317712Rat
1310936Spsb3splA/ryanodine receptor domain and SOCS box containing 3101390717513912841Rat
1306568Cpped1calcineurin-like phosphoesterase domain containing 11037015223821050Rat
1308042Haghlhydroxyacylglutathione hydrolase-like101480495714809495Rat
1308075Tekt4tektin 4101448776014492936Rat
1309177Glis2GLIS family zinc finger 2101095115710978524Rat
1332862Olr1366olfactory receptor 1366101209016312138439Rat
1308972NagpaN-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase101038026210388609Rat
1307155Mettl26methyltransferase like 26101489457414908067Rat
1307174Abca3ATP binding cassette subfamily A member 3101338243913439748Rat
1311614GnptgN-acetylglucosamine-1-phosphate transferase subunit gamma101425218614257128Rat
1305765Hbq1hemoglobin, theta 1101530916815310046Rat
1310163Srrm2serine/arginine repetitive matrix 2101281547112848750Rat
1305773Clec16aC-type lectin domain containing 16A1049278045123749Rat
1306625Smim23small integral membrane protein 23101740345617407091Rat
1310686Cdip1cell death-inducing p53 target 1101077353810796979Rat
1308837Cldn6claudin 6101271030212713987Rat
1311395Pgap6post-glycosylphosphatidylinositol attachment to proteins 6101513891815151581Rat
1310531Pank3pantothenate kinase 3102022912920252955Rat
1308915Naa60N(alpha)-acetyltransferase 60, NatF catalytic subunit101162255411653078Rat
1332793Olr1525olfactory receptor 1525101190328511904247Rat
1305982Ciao3cytosolic iron-sulfur assembly component 3101479588814804953Rat
1309533Paqr4progestin and adipoQ receptor family member 4101275897012762649Rat
1306143Tbc1d24TBC1 domain family, member 24101320581913236013Rat
1305506Ubtd2ubiquitin domain containing 2101703771617100263Rat
1305511Pplperiplakin101045091910496575Rat
1333251Olr1355olfactory receptor 1355101197245711973419Rat
1307486Hbzhemoglobin subunit zeta101534382115345301Rat
1561451Nudt16l1nudix hydrolase 16 like 1101063617410638090Rat
1564189Dock2dedicator of cytokinesis 2101882723719244823Rat
1564190Tlx3T-cell leukemia, homeobox 3101778970617792207Rat
1560494Abca17ATP-binding cassette, subfamily A (ABC1), member 17101328924613382221Rat
1564938DexiDexi homolog1051260215138746Rat
1334376Olr1356olfactory receptor 1356101168289011683828Rat
1563656RGD1563656similar to 40S ribosomal protein S2101257788212578860Rat
1563944Nsg2neuronal vesicle trafficking associated 2101560159415661441Rat
1563691Mapk8ip3mitogen-activated protein kinase 8 interacting protein 3101391841713958335Rat
1303256Prss27serine protease 27101306995913077322Rat
1560244Ccdc78coiled-coil domain containing 78101480835514812284Rat
1564984Neurl1bneuralized E3 ubiquitin protein ligase 1B101675809716784943Rat
1311210Rbfox1RNA binding fox-1 homolog 110815219810248120Rat
1359596Dnaaf8dynein axonemal assembly factor 8101060074710614891Rat
1560021Rogdirogdi atypical leucine zipper101056783410572453Rat
1561157RGD1561157RGD1561157101277102312771947Rat
1565744Tsr3TSR3 ribosome maturation factor101425715014259712Rat
1560789RGD1560789similar to ribosomal protein S2101544897415449892Rat
1561167Tmem186transmembrane protein 1861069829386986256Rat
1563163Rmi2RecQ mediated genome instability 21048293334837264Rat
1561796RGD1561796RGD1561796101161886711632151Rat
1359314Tmem204transmembrane protein 204101407651814104849Rat
1309127Fbxl16F-box and leucine-rich repeat protein 16101482945314841739Rat
1334113Olr1374olfactory receptor 1374101228889512289836Rat
1334265Olr1365olfactory receptor 1365101209390612094847Rat
1311931Cpeb4cytoplasmic polyadenylation element binding protein 4101571779415780482Rat
1564301RGD1564301similar to Hdac1 protein101934937419357532Rat
1359295Rsl1d1ribosomal L1 domain containing 11044248684436753Rat
1562841Fbll1fibrillarin-like 1102025865620260299Rat
1559662RGD1559662similar to implantation serine proteinase 2101434774414350247Rat
1559653Traf7TNF receptor associated factor 7101353357013552290Rat
1333886Olr1362olfactory receptor 1362101203044312031384Rat
1333600Olr1524-psolfactory receptor pseudogene 1524101196915811969859Rat
1310795Kremen2kringle containing transmembrane protein 2101276334512767854Rat
1310514Nubp1nucleotide binding protein 11052602375270835Rat
1309072Sox8SRY-box transcription factor 8101458482914589818Rat
1332906Olr1371-psolfactory receptor pseudogene 1371101220219012203141Rat
1332925Olr1370olfactory receptor 1370101218202212182963Rat
1334290Olr1369olfactory receptor 1369101216917812170119Rat
1311225Zc3h7azinc finger CCCH type containing 7 A1044731774512669Rat
1311948Cramp1cramped chromatin regulator homolog 1101398378114032409Rat
1333553Olr1367-psolfactory receptor pseudogene 1367101213934312140303Rat
1334368Olr1368olfactory receptor 1368101215085812151799Rat
1359535Pigqphosphatidylinositol glycan anchor biosynthesis, class Q101494257114958584Rat
1311190Ptx4pentraxin 4101414002814146163Rat
1559998Ccdc154coiled-coil domain containing 154101417727114187378Rat
1334086Olr1376olfactory receptor 1376101233386012334801Rat
1334375Olr1359-psolfactory receptor pseudogene 1359101195521511956157Rat
1564698RGD1564698similar to ribosomal protein S10101935774319360370Rat
1334298Olr1379-psolfactory receptor pseudogene 1379101241670812416896Rat
1359733Trap1TNF receptor-associated protein 1101146488211498931Rat
1311801Syngr3synaptogyrin 3101371055313715312Rat
1560833Mrtfbmyocardin related transcription factor B1011163151278106Rat
1332969Olr1381olfactory receptor 1381101248303212483973Rat
1359443Ubald1UBA-like domain containing 1101069575410700519Rat
1565449Parnpoly(A)-specific ribonuclease1014106361548573Rat
1583566Dnase1l2deoxyribonuclease 1 like 2101347185013473447Rat
1586420LOC688680similar to CTP synthase (UTP--ammonia ligase) (CTP synthetase)1023427662344565Rat
1559806RGD1559806similar to high mobility group protein102307433023074956Rat
1583665LOC679823similar to 60S ribosomal protein L37a101068227410682634Rat
1583666LOC679822similar to dynein, cytoplasmic, light peptide1014929021493171Rat
1565511Septin12septin 12101058090010590582Rat
1563547Smim22small integral membrane protein 22101057214610574339Rat
1587265Prm3protamine 31048774714877985Rat
1584711Prss41serine protease 41101286587212873552Rat
1566405Tvp23atrans-golgi network vesicle protein 23 homolog A1052272205261125Rat
1583873Prm1protamine 11048719094872155Rat
1583204Meiobmeiosis specific with OB-fold101383317013865684Rat
1562673Zg16bzymogen granule protein 16B101297088812984170Rat
1565247Unklunk like zinc finger101420612514252226Rat
1565784RGD1565784RGD1565784101420221714203519Rat
1561345Rpl39lribosomal protein L39-like1054557125459828Rat
1561732Mslnlmesothelin-like101475534414771673Rat
1562576Ranbp17RAN binding protein 17101780040618102947Rat
1565166RGD1565166similar to MGC45438 protein101036190910371046Rat
1584381Hs3st6heparan sulfate-glucosamine 3-sulfotransferase 6101378199913788133Rat
1565486Rbm25l1RNA binding motif protein 25-like 1101026702610270510Rat
1359629Emp2epithelial membrane protein 21053600735394734Rat
1560340Ercc4ERCC excision repair 4, endonuclease catalytic subunit1024162592448364Rat
1564638Sec14l5SEC14-like lipid binding 5101039496310436076Rat
1565835Wfikkn1WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1101489644214898770Rat
1587094LOC679589similar to 40S ribosomal protein S3a (V-fos transformation effector protein)10624394625249Rat
1583741Mrpl28mitochondrial ribosomal protein L28101514867015151581Rat
1583742Prss33serine protease 33101285894112861281Rat
1583743LOC497861similar to 60S ribosomal protein L23a1062439726249916Rat
1583744Atf7ip2activating transcription factor 7 interacting protein 21054030995445989Rat
1583746LOC497848hypothetical LOC49784810529156530420Rat
1588807Efcab9EF-hand calcium binding domain 9101710712317112245Rat
1588531LOC363527similar to serine/threonine protein kinase 61022027452204008Rat
1588846LOC688442similar to limkain b11017644951768325Rat
1585015Ergic1endoplasmic reticulum-golgi intermediate compartment 1101653119216627183Rat
1583243Msrb1methionine sulfoxide reductase B1101376488313770609Rat
1562597Pdxdc1pyridoxal-dependent decarboxylase domain containing 11020250562113712Rat
1564086LitafdLITAF domain containing1069317136935869Rat
1566009Slx4SLX4 structure-specific endonuclease subunit101152656311549291Rat
1560593Tmem114transmembrane protein 1141071689987185251Rat
1588845LOC688443hypothetical protein LOC688443101690069416901279Rat
1588238Casp16caspase 16101258600912592023Rat
1588527LOC363565similar to thyroid hormone receptor associated protein 3102269983922705360Rat
1588528LOC363543similar to acidic ribosomal phosphoprotein P0101069195010692965Rat
1585299LOC688708similar to ATP-binding cassette, sub-family C (CFTR/MRP), member 11016417101750234Rat
1595127LOC685321similar to protease, serine, 28101432744114329741Rat
1591334Nme4NME/NM23 nucleoside diphosphate kinase 4101511462415118479Rat
1596162Snx29sorting nexin 291038848804298699Rat
1598335Prr35proline rich 35101496195714966818Rat
1594525LOC360472hypothetical gene supported by AF3211291078940657898844Rat
1592603Mcrip2MAPK regulated co-repressor interacting protein 2101488381314888784Rat
1589435LOC680641similar to 40S ribosomal protein S9101241552012416097Rat
1589404Rps4x-ps5ribosomal protein S4, X-linked, pseudogene 5101244094312441792Rat
1594823LOC689229similar to GC-rich promoter binding protein 1-like 1102407891324082016Rat
1593806Gng13G protein subunit gamma 13101474117914743083Rat
1598163Pam16presequence translocase associated motor 16101094253410950654Rat
1596720Bricd5BRICHOS domain containing 5101349872613500259Rat
1596731E4f1E4F transcription factor 1101347147813495018Rat
1596424LOC685273similar to U1 small nuclear ribonucleoprotein C (U1 snRNP protein C) (U1C protein) (U1-C)101419168114192406Rat
1598149Vasnvasorin101091775010928259Rat
2293499Tedc2tubulin epsilon and delta complex 2101324603213251196Rat
2318759Ift140intraflagellar transport 140101403266514121682Rat
2320105Insyn2binhibitory synaptic factor family member 2B101891672119023859Rat
2320268LOC100361397hypothetical LOC1003613971052150065216182Rat
2320726Shisa9shisa family member 91033356163629334Rat
2320756LOC100361104CG10869-like101070752910750893Rat
2320907Hbq1bhemoglobin subunit theta 1B101533429315336061Rat
2324483Mpv17lMPV17 mitochondrial inner membrane protein like1019884512025300Rat
4888561Mir3547microRNA 3547101426227014262379Rat
2325341Mir484microRNA 48410887684887760Rat
2325546Mir218-2microRNA 218-2102006845120068560Rat
2325579Mir103a1microRNA 103a-1102024441220244497Rat
4888594Mir3568microRNA 3568101066134410661444Rat
2324735LOC100363155HAUS augmin-like complex, subunit 4-like1021689512170803Rat
6491522LOC100911627uncharacterized LOC1009116271044139214424815Rat
6495913LOC100910926eukaryotic translation initiation factor 5A-1-like101239866912399165Rat
6497652LOC100910596uncharacterized LOC100910596101652038316524604Rat
6497740LOC100910623uncharacterized LOC100910623101258218112583980Rat
6500968LOC10090993260S acidic ribosomal protein P0-like1016277321628634Rat
7518212LOC102547424uncharacterized LOC102547424102347361223898962Rat
7524038LOC102550048uncharacterized LOC102550048101611376416209712Rat
7504711LOC102553614rho GTPase-activating protein 20-like10392883406049Rat
7532467LOC102555329uncharacterized LOC1025553291011092941117316Rat
7534912LOC102555240uncharacterized LOC102555240109906831014066Rat
7498198Zfp174zinc finger protein 174101166658011676328Rat
7520481Wdr90WD repeat domain 90101486467214881285Rat
7612189LOC102557038uncharacterized LOC102557038101267512712676638Rat
7663456LOC102553451uncharacterized LOC1025534511052722505277055Rat
7558919LOC102551062uncharacterized LOC102551062101126206811273032Rat
7653599LOC102546403uncharacterized LOC1025464031067935136798116Rat
7560045LOC10255559860S ribosomal protein L13a-like1017810611783560Rat
7575650LOC102549733uncharacterized LOC102549733101591189815928887Rat
7624373LOC102549079putative 60S ribosomal protein L37a-like101508088615082886Rat
7625912LOC102547952uncharacterized LOC102547952101446994114484663Rat
7626388LOC102551327uncharacterized LOC102551327101325119013251997Rat
7609447LOC102546970uncharacterized LOC1025469701071919417198779Rat
7618014LOC102552269uncharacterized LOC1025522691047096804810582Rat
7572861LOC102549077uncharacterized LOC1025490771025677892568833Rat
7574419LOC102547286uncharacterized LOC1025472861013161081354300Rat
7546518LOC102553477uncharacterized LOC102553477101254349312547783Rat
7580290LOC102551976uncharacterized LOC102551976101355253013553069Rat
7563847LOC102552514uncharacterized LOC1025525141021261852128818Rat
7584006LOC102551100uncharacterized LOC1025511001027798512840935Rat
7584706LOC102551820uncharacterized LOC102551820101622333116231136Rat
7607054LOC102554563uncharacterized LOC1025545631063773766389405Rat
7587933LOC102552476uncharacterized LOC102552476101664694016676223Rat
7672755LOC102555877uncharacterized LOC102555877101678509716799280Rat
7677559LOC102546482uncharacterized LOC102546482101775083317776457Rat
7739848LOC102551940uncharacterized LOC102551940101175420211760864Rat
7670669LOC10255045360S ribosomal protein L3-like101510142715102915Rat
7727485LOC102552101uncharacterized LOC1025521011045783634581512Rat
9188304LOC103693274uncharacterized LOC103693274101108079011085832Rat
9117786LOC103693272uncharacterized LOC1036932721067204026726491Rat
9344254Percc1proline and glutamate rich with coiled coil 1101418651314191213Rat
9219979LOC103690683ATP synthase-coupling factor 6, mitochondrial pseudogene108304383431Rat
9317741LOC103693553uncharacterized LOC10369355310148110150183Rat
9318017LOC10369330060S ribosomal protein L34 pseudogene101511993915121804Rat
9473667LOC103693292uncharacterized LOC103693292101533866815343555Rat
9438191LOC103693260uncharacterized LOC1036932601022213352385035Rat
9685090Mir193bmicroRNA 193b1013177421317824Rat
10059729Baiap3BAI1-associated protein 3101426026914273019Rat
11360294LOC108352063uncharacterized LOC108352063101473747614740809Rat
11446138Trnar-ccu4transfer RNA arginine (anticodon CCU) 4101258418112584253Rat
11464159LOC10835217160S ribosomal protein L34 pseudogene101505474615056113Rat
11466937LOC108352202uncharacterized LOC108352202102062503820628112Rat
11467871LOC108352056cytochrome c oxidase subunit 6B1 pseudogene1068761746876517Rat
11469336LOC108352072uncharacterized LOC108352072102194260222287277Rat
11435267Trnap-agg11transfer RNA proline (anticodon AGG) 11101255933812559409Rat
11436072NEWGENE_6497122FLYWCH family member 2101279875712807082Rat
11436409Trnap-ugg4transfer RNA proline (anticodon UGG) 4101258201112582082Rat
11458070LOC108352212uncharacterized LOC1083522121067134056714467Rat
11437448LOC108352048uncharacterized LOC1083520481044016734410788Rat
11447476LOC108352196uncharacterized LOC1083521961090532909065824Rat
11357857Trnak-cuu15transfer RNA lysine (anticodon CUU) 15101258293412583006Rat
11449947LOC108352064uncharacterized LOC108352064101482283514829384Rat
11450452Trnak-cuu14transfer RNA lysine (anticodon CUU) 14101256804612568118Rat
11431432LOC108352061uncharacterized LOC108352061101371543813718484Rat
11432034LOC10835206560S ribosomal protein L36a-like101497130614971657Rat
11395008Trnak-cuu13transfer RNA lysine (anticodon CUU) 13101256135512561427Rat
11405523Trnag-ccc5transfer RNA glycine (anticodon CCC) 5101489415114894221Rat
11406617Trnak-cuu12transfer RNA lysine (anticodon CUU) 12101255975112559823Rat
11412314LOC108352068uncharacterized LOC108352068101587651315884616Rat
11415574LOC108352213uncharacterized LOC108352213101031936010322767Rat
11424155LOC108352204uncharacterized LOC108352204102073121220732795Rat
11427363LOC10835217660S ribosomal protein L35a pseudogene1071616277162832Rat
11397104LOC108352070uncharacterized LOC108352070101937624019413283Rat
11386799Trnar-ccg1transfer RNA arginine (anticodon CCG) 1101258604512586117Rat
11377177LOC108352053uncharacterized LOC1083520531055951485597118Rat
11387328LOC108352198uncharacterized LOC108352198101810235218167503Rat
11378146LOC10835205560S ribosomal protein L7 pseudogene1065647066565810Rat
11388508Trnap-agg12transfer RNA proline (anticodon AGG) 12101256416212564233Rat
11411272C10H5orf58chromosome 10 open reading frame, human C5orf58101869095818697224Rat
11402134Trnap-cgg1transfer RNA proline (anticodon CGG) 1101256786612567937Rat
11383084LOC108352067uncharacterized LOC108352067101552081615528049Rat
11383223LOC10835217740S ribosomal protein S25 pseudogene101297210612972712Rat
11476401LOC108352066uncharacterized LOC108352066101527067915273480Rat
11509389LOC108352071uncharacterized LOC108352071101941348119418566Rat
11510400LOC108352172spindle and kinetochore-associated protein 2 pseudogene101808982118091927Rat
11510655Trnat-cgu2transfer RNA threonine (anticodon CGU) 21013070941307165Rat
11494898Trnap-ugg3transfer RNA proline (anticodon UGG) 3101256526012565331Rat
11483725LOC108352046uncharacterized LOC1083520461029295502980410Rat
11492496Trnar-ccu3transfer RNA arginine (anticodon CCU) 3101255686012556932Rat
41120588LOC120095315uncharacterized LOC120095315101470682314710466Rat
41353668LOC120095054uncharacterized LOC120095054101550640515509100Rat
41354756LOC120095501U6 spliceosomal RNA1072759687276074Rat
41378413LOC120095454small nucleolar RNA SNORA17101929970519299826Rat
41086909LOC120095014uncharacterized LOC1200950141036004053607994Rat
41202743LOC120095443small nucleolar RNA SNORA171071905427190673Rat
41356480LOC120095314olfactory receptor 1361101192331511925627Rat
41139147LOC120095018thymosin beta-10-like1046703064670687Rat
41139965LOC120095016uncharacterized LOC1200950161043604994362535Rat
41140059LOC120095472small nucleolar RNA ACA64101374688513747012Rat
41168947LOC120095023uncharacterized LOC1200950231071027787108907Rat
41204269LOC120095012sperm motility kinase 4A-like1028250872828222Rat
41357803LOC120095033uncharacterized LOC120095033101124784211249750Rat
41383155LOC120095026uncharacterized LOC120095026101060697210613235Rat
41170841LOC120095005uncharacterized LOC12009500510434415440278Rat
41205966LOC120095254uncharacterized LOC120095254102407336024087187Rat
41090897LOC120095362U6 spliceosomal RNA1072596587259762Rat
41114981LOC120095042uncharacterized LOC120095042101287930112882032Rat
41287337LOC120095053uncharacterized LOC120095053101531239515334484Rat
41359853LOC120095040uncharacterized LOC120095040101261003612614619Rat
41360376LOC120095064uncharacterized LOC120095064101750954717513271Rat
41091800NEWGENE_40934091transfer RNA alanine (anticodon AGC)102359142323591504Rat
41145610LOC120095019uncharacterized LOC1200950191047510434753063Rat
41209003LOC120095057uncharacterized LOC120095057101596128815970421Rat
41210028LOC12009522860S ribosomal protein L11-like1087596308995638Rat
41176188LOC12009531660S ribosomal protein L8-like101603968316041794Rat
41261886LOC120095384small nucleolar RNA SNORA72102186971021869841Rat
41262027LOC120095008uncharacterized LOC1200950081024723972476247Rat
41097291LOC120095066uncharacterized LOC120095066101936236119369982Rat
41121965LOC120093133ralA-binding protein 1-like10372763375350Rat
41393651LOC120095045uncharacterized LOC120095045101298206413009011Rat
41122536LOC120095034uncharacterized LOC120095034101131361511314908Rat
41265420LOC120095247uncharacterized LOC120095247102013874520156177Rat
41394605LOC120095235bcl-2-like protein 121045942844599505Rat
41100890LOC120095052uncharacterized LOC120095052101500538315007179Rat
41101158LOC120095048uncharacterized LOC120095048101345263613455029Rat
41215667LOC120095043developmental pluripotency-associated protein 5A-like101289751612898501Rat
41345313LOC120095050uncharacterized LOC120095050101420440914207293Rat
41395672LOC1200953745.8S ribosomal RNA10167840167992Rat
41183096LOC120095041vegetative cell wall protein gp1-like101272139812724554Rat
41268490LOC120095011uncharacterized LOC1200950111027544482766623Rat
41269713LOC120095013sperm motility kinase 4A-like1028528732854902Rat
41346304LOC120095245uncharacterized LOC120095245101833283518339900Rat
41398555LOC120095007uncharacterized LOC1200950071013467891362336Rat
41183654LOC120095025uncharacterized LOC1200950251072486667252457Rat
41184374LOC120095444small nucleolar RNA SNORA17101930121219301339Rat
41270792LOC120095249uncharacterized LOC120095249102122099721294620Rat
41292247LOC120095468small nucleolar RNA U13101528499715285098Rat
41399483LOC120095065uncharacterized LOC120095065101920504919234280Rat
41072225NEWGENE_40926764transfer RNA proline (anticodon AGG)101387739613877476Rat
41072377LOC120095031uncharacterized LOC120095031101110276811113878Rat
41185742LOC120095465U6atac minor spliceosomal RNA101518461015184735Rat
41272198LOC120095382U7 small nuclear RNA1021781282178192Rat
41293248LOC120095441small nucleolar RNA SNORA481037322853732427Rat
41349806LOC120095251uncharacterized LOC120095251102127366921282247Rat
41374738LOC120095044uncharacterized LOC120095044101289503112899070Rat
41400402LOC120095046uncharacterized LOC120095046101319031713196601Rat
41162943LOC120095036uncharacterized LOC120095036101151186811514868Rat
41294128LOC120095022uncharacterized LOC1200950221057497235754581Rat
41165016LOC120095252uncharacterized LOC120095252102063926520642557Rat
41274592LOC120095436small nucleolar RNA SNORA48101029396110294104Rat
41275348LOC120095400small nucleolar RNA SNORD60101355277313552855Rat
41296108LOC120095253uncharacterized LOC120095253102125963321273194Rat
41352403LOC120095313mRNA turnover protein 4 homolog1046077154608332Rat
41377001LOC120095241uncharacterized LOC1200952411016399211641775Rat
41377102LOC120095067uncharacterized LOC120095067101937092719404604Rat
41403835LOC120095027non-histone chromosomal protein HMG-17-like101080111210805937Rat
41166599LOC120095416small nucleolar RNA SNORA44101527107015271175Rat
41200765LOC12009500960S ribosomal protein L31-like1024853492486714Rat
40971359LOC120095021uncharacterized LOC1200950211050099215026599Rat
40971936LOC120095438U1 spliceosomal RNA1044815654481724Rat
40973505LOC120095348nuclear receptor coactivator 4-like1018379361881059Rat
40952738LOC120095024uncharacterized LOC1200950241071529107159730Rat
40925953LOC120095062uncharacterized LOC120095062101722256217232541Rat
40955000LOC120095243uncharacterized LOC1200952431038885883895956Rat
40985191LOC120095039uncharacterized LOC120095039101261101412614387Rat
41005309LOC12009523614-3-3 protein zeta/delta-like1051985565206803Rat
40961788LOC120095020uncharacterized LOC1200950201048788464879969Rat
41007594LOC120095049uncharacterized LOC120095049101367065713672500Rat
40987879LOC120095389small nucleolar RNA SNORA70101432330114323436Rat
41009470LOC12009523760S ribosomal protein L9-like101761446917615127Rat
41010525LOC120095037olfactory receptor 1361-like101187959711880986Rat
40967117LOC120095060uncharacterized LOC120095060101692670416929456Rat
40994303LOC120095421small nucleolar RNA SNORA2/SNORA34 family101264035612640491Rat
40969829LOC120095234multidrug resistance-associated protein 1-like1022025502222456Rat
40969926LOC120095032uncharacterized LOC120095032101112076611127004Rat
40996176LOC120095063uncharacterized LOC120095063101743648717451405Rat
41312619NEWGENE_40938314transfer RNA serine (anticodon AGA)101357106513571138Rat
41312800LOC120095059uncharacterized LOC120095059101648919716491486Rat
41024716LOC120095312formin-1-like1043264604328006Rat
41048632LOC120095398small nucleolar RNA SNORA64/SNORA10 family101374813913748272Rat
41244293LOC120095246uncharacterized LOC120095246101811445818123027Rat
41050173LOC12009501040S ribosomal protein S19-like1026414232645350Rat
41050456LOC120095015uncharacterized LOC1200950151035127863539323Rat
41077137LOC120095017uncharacterized LOC1200950171046254384644624Rat
41246647LOC120095250uncharacterized LOC120095250102149522821532145Rat
41053125LOC120095051uncharacterized LOC120095051101454922514556662Rat
41134953LOC120095055uncharacterized LOC120095055101565846815662571Rat
41135461LOC120095029uncharacterized LOC120095029101095381310954672Rat
41338383LOC120095445small nucleolar RNA SNORA17101966091719661046Rat
41257235LOC120095004uncharacterized LOC12009500410418304470170Rat
41032296LOC120095242serine/arginine-rich splicing factor 3-like1021721722176018Rat
41298359LOC120095035uncharacterized LOC120095035101131491311315810Rat
41060630LOC120095002N-alpha-acetyltransferase 11-like10419439421042Rat
41337511LOC120095047uncharacterized LOC120095047101318313213189435Rat
41303059LOC120095244uncharacterized LOC120095244101820318618223924Rat
41303928LOC120095028uncharacterized LOC120095028101081243810819939Rat
41016662NEWGENE_40934091transfer RNA alanine (anticodon AGC)101288178512881859Rat
41304979LOC120095056uncharacterized LOC120095056101563646515639919Rat
41018573LOC120095061uncharacterized LOC120095061101724705617257621Rat
41018802LOC120095452small nucleolar RNA SNORA17101305604813056165Rat
41041103LOC120095030uncharacterized LOC120095030101101399711020883Rat
41238743LOC120095003thioredoxin-like protein 4A10419449419656Rat
41307913LOC120095038uncharacterized LOC120095038101255677812561942Rat
41020704LOC120095006uncharacterized LOC12009500610348011352773Rat
41309728LOC120095248uncharacterized LOC120095248101970057019702537Rat
41311026LOC120095058uncharacterized LOC120095058101623131616250314Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
34084D10Mgh18196101792601517926223Ratregion
34361D10Mgh251411051440275144168Ratregion
33585D10Mit6167101448701114487201Ratregion
33591D10Mit14921053870145387112Ratregion
33600D10Mit151851048263974826582Ratregion
33630D10Mit17175101272586612726029Ratregion
33666D10Mit1689101960648319606574Ratregion
35983D10Rat891331031521093152242Ratregion
36249D10Rat45123101981591919816042Ratregion
37464D10Rat952171063578966358120Ratregion
37526D10Rat911191096582759658394Ratregion
35216D10Rat48178101347078013470950Ratregion
35449D10Rat49154101027413110274293Ratregion
35485D10Rat64158101703568217035837Ratregion
37708D10Rat941991077921027792303Ratregion
37770D10Rat113231101957051319570752Ratregion
37778D10Rat1171421091720799172261Ratregion
37890D10Rat75144102077643020776562Ratregion
36394D10Mgh271371033259633326100Ratregion
36430D10Rat50158101556066915560838Ratregion
36468D10Rat672021045217884521990Ratregion
36522D10Rat44204102415812124158324Ratregion
36542D10Rat51160101107211511072299Ratregion
36683D10Rat42140102132980521330072Ratregion
36683D10Rat42140102132980521329934Ratregion
34851D10Rat65165101009973910099904Ratregion
35001D10Rat43150102291826822918421Ratregion
35012D10Rat46177101938810219388279Ratregion
35769D10Rat47169101582813715828306Ratregion
35841D7Rat19176101672977616731416Ratregion
39664D10Rat2002461053590115359247Ratregion
39968D10Rat198238101459072614590940Ratregion
38062D10Rat962021061541826154377Ratregion
38496D10Rat110240101075190210752138Ratregion
38526D10Rat1151361054811925481334Ratregion
38756D10Rat2181431090021929002335Ratregion
40034D10Rat1991721014688431469029Ratregion
39082D10Rat118131101923323519233348Ratregion
39304D10Rat121211101649709316497274Ratregion
41937D10Arb262321048789024879130Ratregion
42902D10Rat259217101033584410336045Ratregion
42903D10Rat2602101093512689351464Ratregion
42904D10Rat257207101497528114975474Ratregion
42905D10Rat258200101314582413146036Ratregion
42907D10Rat217200101740062217400821Ratregion
41276D10Rat182151101724551317245662Ratregion
41376D10Rat185126101230283512302958Ratregion
41524D10Rat180170101876880518768977Ratregion
40924D10Rat181130101743290617433034Ratregion
41030D10Rat183246101502851315028745Ratregion
41698D10Rat22521710772292772499Ratregion
41848D10Rat216395102030104320301412Ratregion
44670D10Got11071047655274765634Ratregion
44671D10Got111341053047965304932Ratregion
44672D10Got122351058019905802227Ratregion
44673D10Got131891063908006390989Ratregion
44674D10Got142121068192886819500Ratregion
44675D10Got162461082840558284301Ratregion
44676D10Got1641241059330095933133Ratregion
44677D10Got172001079761807976378Ratregion
44679D10Got21571047686584768815Ratregion
44680D10Got212541087727608773014Ratregion
44681D10Got72341051821515182387Ratregion
44682D10Got92101056840475684259Ratregion
44685D10Got202791088246928824971Ratregion
44686D10Got23279101042550610425712Ratregion
44687D10Got221781098433229843500Ratregion
44688D10Got24251101103556511035813Ratregion
44690D10Got25124101288103712881161Ratregion
44692D10Got27279101340527313405552Ratregion
44694D10Got28212101413947114139683Ratregion
44695D10Got29296101340527213405568Ratregion
44696D10Got26185101383897413839151Ratregion
44696D10Got26185101383892613839151Ratregion
44700D10Got30222101479346814793692Ratregion
44703D10Got34154101721046217210616Ratregion
44704D10Got37256101804492518045181Ratregion
44705D10Got35192101801670818016901Ratregion
44706D10Got36103102045598020456083Ratregion
44707D10Got38134102243642722436561Ratregion
44708D10Got39176102386686123867032Ratregion
60753D10Wox3180101790711317907293Ratregion
59975D10Got1591991077971587797357Ratregion
59977D10Got181931080021978002390Ratregion
59978D10Got31821038839253884109Ratregion
59980D10Got42821043123144312596Ratregion
59981D10Got51681046420934642261Ratregion
59985D10Got62741034063203406594Ratregion
59989D10Got81151044949894495104Ratregion
61274D10Arb20183102344481323444992Ratregion
62425D10Uia1224101876922318769447Ratregion
62429D10Uia2198102242750022427696Ratregion
66376D10Mco27133101066908010669197Ratregion
66423D10Mco461601047175514717711Ratregion
66425D10Mco47190101260061312600791Ratregion
66428D10Mco4814510891891892046Ratregion
66430D10Mco491891063796236379804Ratregion
66457D10Mco50314101563014615630462Ratregion
66461D10Mco52252102033211620332380Ratregion
66523D10Mco733501099056529906017Ratregion
66709D10Mco101991068139716814170Ratregion
66710D10Mco11251101286720112867445Ratregion
67246D10Wox27128101721050917210637Ratregion
67329D10Arb23152101326508113265233Ratregion
67333D10Arb29211101317059013170801Ratregion
1631679D10Ulb114951057963285796484Ratregion
1632144D10Got2292331015501721550398Ratregion
1632197D10Got2431801029144242914604Ratregion
1579067D10Chm250218101719722217197278Ratregion
1627915D10Got231141101468086414681007Ratregion
1628379D10Got2451721091652589165428Ratregion
1628983D10Got2002441025063122506556Ratregion
1640908D10Got416173101111662311116791Ratregion
1640305D10Got4071651021436562143823Ratregion
1635592D10Uia91171029957102995827Ratregion
1636161D10Got2011091099450279945133Ratregion
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5503438UniSTS:4619101158101440123714402395Ratregion
5501439Sox81137101458794914589086Ratregion
5505112C160rf721501067744306774580Ratregion
5501598RH673661301019848111984941Ratregion
5502180MARC_7863-7864:996688108:1181101283228512833447Ratregion
5502062MARC_26359-29406:1040140027:11251069735176974356Ratregion
5502140MARC_5473-5474:996690420:197101387801613878777Ratregion
5502690Abca3537101343760813438953Ratregion
5502341RH124545133101049664910496782Ratregion
Position Markers

Flank 1: (D10Rat26)
Rat AssemblyChrPosition (strand)Source
Celera1072,105,962 - 72,106,120UniSTS
RH 2.0 Map10755.6RGD
SHRSP x BN Map1051.03RGD
FHH x ACI Map1059.1999RGD
Cytogenetic Map10q26UniSTS
Peak: (D10Mgh10)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01036,185,929 - 36,186,066NCBI
Rnor_5.01035,954,931 - 35,955,068UniSTS
RGSC_v3.41036,254,742 - 36,254,879UniSTS
RGSC_v3.41036,254,741 - 36,254,879RGD
RGSC_v3.11036,255,791 - 36,255,928RGD
Celera1034,362,292 - 34,362,429UniSTS
RH 3.4 Map10374.6UniSTS
RH 3.4 Map10374.6RGD
RH 2.0 Map10401.0RGD
SHRSP x BN Map1034.04RGD
FHH x ACI Map1033.0199RGD
Cytogenetic Map10q22UniSTS
Flank 2: (D10Rat44)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21024,158,121 - 24,158,324 (+)MAPPER
Rnor_6.01024,884,084 - 24,884,284NCBI
Rnor_5.01024,738,710 - 24,738,910UniSTS
RGSC_v3.41024,731,630 - 24,731,831RGD
RGSC_v3.41024,731,631 - 24,731,831UniSTS
RGSC_v3.11024,732,679 - 24,732,880RGD
Celera1023,735,387 - 23,735,587UniSTS
RH 3.4 Map10253.11UniSTS
RH 3.4 Map10253.11RGD
RH 2.0 Map10289.2RGD
SHRSP x BN Map1027.23RGD
FHH x ACI Map1021.4699RGD


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634329Pia15Pristane induced arthritis QTL 153.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10124158324Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135225947Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138328221Rat
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142315980Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
1549898Neuinf3Neuroinflammation QTL 326.4nervous system integrity trait (VT:0010566)MHC Class II RT1A-positive spinal cord ventral horn area to total spinal cord ventral horn area ratio (CMO:0001980)1034063205387112Rat
1576304Schws7Schwannoma susceptibility QTL 70.0115nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)10476552719816042Rat
631828Alc5Alcohol consumption QTL 52.4consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10514402717245662Rat
737820Alc9Alcohol consumption QTL 92.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10514402719233348Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)cortical volumetric bone mineral density (CMO:0001730)10538701450387014Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10538701450387014Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10538701450387014Rat
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)10580199062146030Rat
631660Hcar1Hepatocarcinoma resistance QTL 13.40.0001liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)10615418215990232Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
1549907Neuinf2Neuroinflammation QTL 2270nervous system integrity trait (VT:0010566)MHC Class II RT1A-positive spinal cord ventral horn area to total spinal cord ventral horn area ratio (CMO:0001980)1061543776357896Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10637574651375746Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
9590310Scort19Serum corticosterone level QTL 196.30.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
9590268Scort13Serum corticosterone level QTL 133.260.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
9589136Insul27Insulin level QTL 2710.460.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)101147401056474010Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101448701189062041Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
1354587Kidm21Kidney mass QTL 213.3kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)101502851360430477Rat
631564Apr3Acute phase response QTL 33.9blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)101527595560275955Rat
6893350Bw99Body weight QTL 990.870.16body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
6893352Bw100Body weight QTL 1000.330.6body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
737823Alc12Alcohol consumption QTL 124.5consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)101724551319388279Rat
631532Cm50Cardiac mass QTL 506.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)101790711351786432Rat
1598852Anxrr19Anxiety related response QTL 195.07body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)101816784163167841Rat
2313055Bw96Body weight QTL 963.60.0001body mass (VT:0001259)body weight (CMO:0000012)101960648364606483Rat
2313087Bmd80Bone mineral density QTL 803.20.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)101960648364606483Rat
1554317Bmd4Bone mineral density QTL 49.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)101981604299406971Rat
1581497Esta1Estrogen-induced thymic atrophy QTL 1thymus mass (VT:0004954)thymus wet weight (CMO:0000855)102132980561345413Rat
724556Pur2Proteinuria QTL 25.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)102242750090627625Rat
631531Iresp2Immunoglobin response QTL26.3blood immunoglobulin E amount (VT:0002492)serum total immunoglobulin E level (CMO:0001542)102291826836400810Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Pia15

RGD Curation Notes
Note Type Note Reference
qtl_cross_type backcross  
qtl_gene whole genome analysis using PGMapper revealed Tnfsf13, Ccl2, Il4, Ccl3, Ccl5, Cxcl16, Il13, Tp53 and Il3 as RA associated genes and Il4 and Il3 as RA associated polymorphism either in coding or regulatory region 2300074
qtl_gene 804 known and 127 novel genes were found in an analysis based on PubMed and OMIM data 2307198
qtl_general DA allele associates with increased incidences of arthritis 631850