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Gene: Cnot6 (CCR4-NOT transcription complex, subunit 6) Rattus norvegicus
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Symbol: Cnot6
Name: CCR4-NOT transcription complex, subunit 6
Description: Predicted to have poly(A)-specific ribonuclease activity. Predicted to be involved in several processes, including nuclear-transcribed mRNA catabolic process; positive regulation of cytoplasmic mRNA processing body assembly; and positive regulation of nuclear receptor transcription coactivator activity. Predicted to localize to the CCR4-NOT complex; cytoplasm; and nucleus. Orthologous to human CNOT6 (CCR4-NOT transcription complex subunit 6); PARTICIPATES IN microRNA pathway; RNA degradation pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2-methoxyethanol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: carbon catabolite repressor protein 4 homolog; CCR4; CCR4 carbon catabolite repression 4-like; CCR4-NOT transcription complex subunit 6; cytoplasmic deadenylase; LOC287249; RGD1310783; similar to CCR4
Orthologs:
Homo sapiens (human) : CNOT6 (CCR4-NOT transcription complex subunit 6)  HGNC  Alliance
Mus musculus (house mouse) : Cnot6 (CCR4-NOT transcription complex, subunit 6)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Cnot6 (CCR4-NOT transcription complex subunit 6)
Pan paniscus (bonobo/pygmy chimpanzee) : CNOT6 (CCR4-NOT transcription complex subunit 6)
Canis lupus familiaris (dog) : CNOT6 (CCR4-NOT transcription complex subunit 6)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Cnot6 (CCR4-NOT transcription complex subunit 6)
Sus scrofa (pig) : CNOT6 (CCR4-NOT transcription complex subunit 6)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01035,144,291 - 35,195,126 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1035,146,337 - 35,187,416 (-)Ensembl
Rnor_5.01034,916,148 - 34,967,236 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41035,139,386 - 35,192,631 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11035,140,437 - 35,193,680 (-)NCBI
Celera1033,337,338 - 33,387,801 (-)NCBICelera
Cytogenetic Map10q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Cnot6
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1310783
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-10-16
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.