Rab11fip3 (RAB11 family interacting protein 3) - Rat Genome Database

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Gene: Rab11fip3 (RAB11 family interacting protein 3) Rattus norvegicus
Analyze
Symbol: Rab11fip3
Name: RAB11 family interacting protein 3
RGD ID: 1308952
Description: Predicted to enable dynein light intermediate chain binding activity; protein homodimerization activity; and small GTPase binding activity. Predicted to be involved in endocytic recycling; negative regulation of adiponectin secretion; and regulation of cytokinesis. Predicted to act upstream of or within protein localization to cilium. Predicted to be located in several cellular components, including centriolar satellite; intercellular bridge; and recycling endosome. Predicted to be active in cleavage furrow; cytoplasmic vesicle; and midbody. Orthologous to human RAB11FIP3 (RAB11 family interacting protein 3); PARTICIPATES IN endocytosis pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine; ammonium chloride.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: eferin; LOC303002; LRRGT00043; RAB11 family interacting protein 3 (class II); rab11 family-interacting protein 3; rab11-family interacting protein 3; RGD1308952; similar to mKIAA0665 protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21015,002,650 - 15,086,382 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1015,002,926 - 15,118,479 (-)Ensembl
Rnor_6.01015,348,356 - 15,433,384 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1015,349,888 - 15,381,691 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01015,162,587 - 15,246,355 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41015,248,355 - 15,332,036 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11015,249,035 - 15,318,838 (-)NCBI
Celera1014,670,109 - 14,755,010 (-)NCBICelera
Cytogenetic Map10q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15601896   PMID:15883036   PMID:16148947   PMID:17030804   PMID:17394487   PMID:18511905   PMID:24040321   PMID:25272277   PMID:25673879  


Genomics

Comparative Map Data
Rab11fip3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21015,002,650 - 15,086,382 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1015,002,926 - 15,118,479 (-)Ensembl
Rnor_6.01015,348,356 - 15,433,384 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1015,349,888 - 15,381,691 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01015,162,587 - 15,246,355 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41015,248,355 - 15,332,036 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11015,249,035 - 15,318,838 (-)NCBI
Celera1014,670,109 - 14,755,010 (-)NCBICelera
Cytogenetic Map10q12NCBI
RAB11FIP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3816425,649 - 523,011 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl16425,649 - 523,011 (+)EnsemblGRCh38hg38GRCh38
GRCh3716475,649 - 573,011 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3616415,669 - 512,482 (+)NCBINCBI36hg18NCBI36
Build 3416415,668 - 512,481NCBI
Celera16676,072 - 772,867 (+)NCBI
Cytogenetic Map16p13.3NCBI
HuRef16394,074 - 493,813 (+)NCBIHuRef
CHM1_116475,612 - 572,415 (+)NCBICHM1_1
T2T-CHM13v2.016421,839 - 526,088 (+)NCBI
Rab11fip3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391726,208,010 - 26,289,010 (-)NCBIGRCm39mm39
GRCm39 Ensembl1726,208,010 - 26,288,529 (-)Ensembl
GRCm381725,989,036 - 26,070,077 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1725,989,036 - 26,069,555 (-)EnsemblGRCm38mm10GRCm38
MGSCv371726,125,981 - 26,206,122 (-)NCBIGRCm37mm9NCBIm37
MGSCv361725,716,515 - 25,797,155 (-)NCBImm8
Celera1726,522,181 - 26,603,138 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
Rab11fip3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544216,674,867 - 16,736,921 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544216,678,136 - 16,760,663 (-)NCBIChiLan1.0ChiLan1.0
RAB11FIP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.116497,005 - 512,487 (-)NCBIpanpan1.1PanPan1.1panPan2
RAB11FIP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1640,020,673 - 40,100,229 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl640,021,805 - 40,047,273 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha641,283,374 - 41,363,061 (-)NCBI
ROS_Cfam_1.0640,361,997 - 40,441,721 (-)NCBI
ROS_Cfam_1.0 Ensembl640,361,997 - 40,442,678 (-)Ensembl
UMICH_Zoey_3.1640,050,471 - 40,130,124 (-)NCBI
UNSW_CanFamBas_1.0640,010,625 - 40,090,321 (-)NCBI
UU_Cfam_GSD_1.0640,489,876 - 40,569,548 (-)NCBI
Rab11fip3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344112,372,898 - 112,438,098 (-)NCBI
SpeTri2.0NW_004936501470,307 - 535,958 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB11FIP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl341,211,684 - 41,285,196 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1341,211,683 - 41,284,998 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2341,300,071 - 41,308,378 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RAB11FIP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.15358,951 - 445,150 (+)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606830,715,524 - 30,813,892 (-)NCBIVero_WHO_p1.0
Rab11fip3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249131,258,743 - 1,340,349 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
D10Rat183  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21015,028,513 - 15,028,745 (+)MAPPERmRatBN7.2
Rnor_6.01015,375,474 - 15,375,703NCBIRnor6.0
Rnor_5.01015,188,449 - 15,188,678UniSTSRnor5.0
RGSC_v3.41015,274,216 - 15,274,446RGDRGSC3.4
RGSC_v3.41015,274,217 - 15,274,446UniSTSRGSC3.4
RGSC_v3.11015,274,590 - 15,274,819RGD
Celera1014,697,227 - 14,697,456UniSTS
RH 3.4 Map10156.6RGD
RH 3.4 Map10156.6UniSTS
RH 2.0 Map10146.4RGD
SHRSP x BN Map108.07RGD
Cytogenetic Map10q12UniSTS
BE115524  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21015,040,329 - 15,040,480 (+)MAPPERmRatBN7.2
Rnor_6.01015,387,285 - 15,387,435NCBIRnor6.0
Rnor_5.01015,200,260 - 15,200,410UniSTSRnor5.0
RGSC_v3.41015,286,028 - 15,286,178UniSTSRGSC3.4
Celera1014,709,038 - 14,709,188UniSTS
RH 3.4 Map10152.9UniSTS
Cytogenetic Map10q12UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634329Pia15Pristane induced arthritis QTL 153.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10124158324Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135225947Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138328221Rat
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142315980Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
1576304Schws7Schwannoma susceptibility QTL 70.0115nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)10476552719816042Rat
631828Alc5Alcohol consumption QTL 52.4consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10514402717245662Rat
737820Alc9Alcohol consumption QTL 92.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10514402719233348Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)cortical volumetric bone mineral density (CMO:0001730)10538701450387014Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10538701450387014Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10538701450387014Rat
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)10580199062146030Rat
631660Hcar1Hepatocarcinoma resistance QTL 13.40.0001liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)10615418215990232Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10637574651375746Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
9590310Scort19Serum corticosterone level QTL 196.30.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
9590268Scort13Serum corticosterone level QTL 133.260.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
9589136Insul27Insulin level QTL 2710.460.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)101147401056474010Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101448701189062041Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
1354587Kidm21Kidney mass QTL 213.3kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)101502851360430477Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:718
Count of miRNA genes:289
Interacting mature miRNAs:373
Transcripts:ENSRNOT00000027439
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 35 11 7 6 7 1 4 74 35 41 11 1
Low 8 46 34 13 34 7 7 7
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000027439   ⟹   ENSRNOP00000027439
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1015,002,926 - 15,034,733 (-)Ensembl
Rnor_6.0 Ensembl1015,349,888 - 15,381,691 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000027518   ⟹   ENSRNOP00000027518
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1015,106,610 - 15,113,068 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000027593   ⟹   ENSRNOP00000027593
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1015,114,624 - 15,118,479 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000077826   ⟹   ENSRNOP00000068775
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1015,084,691 - 15,118,479 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000098691   ⟹   ENSRNOP00000082618
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1015,002,926 - 15,086,708 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000100008   ⟹   ENSRNOP00000095636
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1015,106,610 - 15,113,081 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000100345   ⟹   ENSRNOP00000080945
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1015,002,926 - 15,086,708 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000104441   ⟹   ENSRNOP00000093315
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1015,106,610 - 15,112,864 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000117914   ⟹   ENSRNOP00000095174
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1015,002,926 - 15,086,708 (-)Ensembl
RefSeq Acc Id: XM_002727755   ⟹   XP_002727801
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21015,002,650 - 15,086,382 (-)NCBI
Rnor_6.01015,348,356 - 15,433,384 (-)NCBI
Rnor_5.01015,162,587 - 15,246,355 (-)NCBI
RGSC_v3.41015,248,355 - 15,332,036 (-)RGD
Sequence:
RefSeq Acc Id: XM_006246071   ⟹   XP_006246133
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21015,002,650 - 15,086,382 (-)NCBI
Rnor_6.01015,348,356 - 15,433,384 (-)NCBI
Rnor_5.01015,162,587 - 15,246,355 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039087118   ⟹   XP_038943046
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21015,065,849 - 15,086,382 (-)NCBI
RefSeq Acc Id: XM_220262   ⟹   XP_220262
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21015,002,650 - 15,086,382 (-)NCBI
Rnor_6.01015,348,356 - 15,433,384 (-)NCBI
Rnor_5.01015,162,587 - 15,246,355 (-)NCBI
RGSC_v3.41015,248,355 - 15,332,036 (-)RGD
Sequence:
Reference Sequences
RefSeq Acc Id: XP_220262   ⟸   XM_220262
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_002727801   ⟸   XM_002727755
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006246133   ⟸   XM_006246071
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSRNOP00000027439   ⟸   ENSRNOT00000027439
RefSeq Acc Id: XP_038943046   ⟸   XM_039087118
- Peptide Label: isoform X4
RefSeq Acc Id: ENSRNOP00000095174   ⟸   ENSRNOT00000117914
RefSeq Acc Id: ENSRNOP00000080945   ⟸   ENSRNOT00000100345
RefSeq Acc Id: ENSRNOP00000095636   ⟸   ENSRNOT00000100008
RefSeq Acc Id: ENSRNOP00000027593   ⟸   ENSRNOT00000027593
RefSeq Acc Id: ENSRNOP00000082618   ⟸   ENSRNOT00000098691
RefSeq Acc Id: ENSRNOP00000093315   ⟸   ENSRNOT00000104441
RefSeq Acc Id: ENSRNOP00000027518   ⟸   ENSRNOT00000027518
RefSeq Acc Id: ENSRNOP00000068775   ⟸   ENSRNOT00000077826
Protein Domains
EF-hand

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q66H66-F1-model_v2 AlphaFold Q66H66 1-446 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308952 AgrOrtholog
BioCyc Gene G2FUF-25738 BioCyc
Ensembl Genes ENSRNOG00000032152 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000027439.4 UniProtKB/TrEMBL
  ENSRNOP00000068775.1 UniProtKB/TrEMBL
  ENSRNOP00000080945 ENTREZGENE
  ENSRNOP00000080945.1 UniProtKB/TrEMBL
  ENSRNOP00000082618 ENTREZGENE
  ENSRNOP00000082618.1 UniProtKB/TrEMBL
  ENSRNOP00000093315.1 UniProtKB/TrEMBL
  ENSRNOP00000095174 ENTREZGENE
  ENSRNOP00000095174.1 UniProtKB/TrEMBL
  ENSRNOP00000095636.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000027439.4 UniProtKB/TrEMBL
  ENSRNOT00000077826.2 UniProtKB/TrEMBL
  ENSRNOT00000098691 ENTREZGENE
  ENSRNOT00000098691.1 UniProtKB/TrEMBL
  ENSRNOT00000100008.1 UniProtKB/TrEMBL
  ENSRNOT00000100345 ENTREZGENE
  ENSRNOT00000100345.1 UniProtKB/TrEMBL
  ENSRNOT00000104441.1 UniProtKB/TrEMBL
  ENSRNOT00000117914 ENTREZGENE
  ENSRNOT00000117914.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.141 UniProtKB/TrEMBL
InterPro EF_hand_dom UniProtKB/TrEMBL
  FIP-RBD_C_sf UniProtKB/TrEMBL
  L3_arc_euk UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/TrEMBL
  NDK-like_dom UniProtKB/TrEMBL
  NDK-like_dom_sf UniProtKB/TrEMBL
  Nucleoside_diP_kinase UniProtKB/TrEMBL
  Rab-bd_FIP-RBD UniProtKB/TrEMBL
  Rab11-FIP3 UniProtKB/TrEMBL
  Ribosomal_L3 UniProtKB/TrEMBL
  Ribosomal_L3_CS UniProtKB/TrEMBL
  Transl_B-barrel_sf UniProtKB/TrEMBL
NCBI Gene 303002 ENTREZGENE
PANTHER PTHR11363 UniProtKB/TrEMBL
  PTHR15726:SF6 UniProtKB/TrEMBL
Pfam NDK UniProtKB/TrEMBL
  RBD-FIP UniProtKB/TrEMBL
  Ribosomal_L3 UniProtKB/TrEMBL
PhenoGen Rab11fip3 PhenoGen
PRINTS NUCDPKINASE UniProtKB/TrEMBL
PROSITE EF_HAND_2 UniProtKB/TrEMBL
  FIP_RBD UniProtKB/TrEMBL
  RIBOSOMAL_L3 UniProtKB/TrEMBL
SMART NDK UniProtKB/TrEMBL
Superfamily-SCOP SSF144270 UniProtKB/TrEMBL
  SSF50447 UniProtKB/TrEMBL
  SSF51735 UniProtKB/TrEMBL
  SSF54919 UniProtKB/TrEMBL
UniProt A0A8I5ZQX0_RAT UniProtKB/TrEMBL
  A0A8I5ZUA1_RAT UniProtKB/TrEMBL
  A0A8I6AJE6_RAT UniProtKB/TrEMBL
  A0A8I6GLH8_RAT UniProtKB/TrEMBL
  A0A8I6GLQ6_RAT UniProtKB/TrEMBL
  F7F3L0_RAT UniProtKB/TrEMBL
  Q66H66_RAT UniProtKB/TrEMBL
  Q6TXF6_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-05-04 Rab11fip3  RAB11 family interacting protein 3  Rab11fip3  RAB11 family interacting protein 3 (class II)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-30 Rab11fip3  RAB11 family interacting protein 3 (class II)   RGD1308952  similar to mKIAA0665 protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1308952  similar to mKIAA0665 protein  RGD1308952_predicted  similar to mKIAA0665 protein (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1308952_predicted  similar to mKIAA0665 protein (predicted)  LOC303002_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC303002_predicted  similar to mKIAA0665 protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL