Snora64 (small nucleolar RNA, H/ACA box 64) - Rat Genome Database

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Gene: Snora64 (small nucleolar RNA, H/ACA box 64) Rattus norvegicus
Analyze
Symbol: Snora64
Name: small nucleolar RNA, H/ACA box 64
RGD ID: 41048632
Description: ASSOCIATED WITH tuberous sclerosis 2 (ortholog); INTERACTS WITH 17beta-estradiol (ortholog); aflatoxin B1 (ortholog); bisphenol A (ortholog)
Type: snorna
RefSeq Status: MODEL
Previously known as: LOC120095398; small nucleolar RNA SNORA64/SNORA10 family
RGD Orthologs
Human
Mouse
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81014,252,671 - 14,252,804 (+)NCBIGRCr8
mRatBN7.21013,748,139 - 13,748,272 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1013,748,139 - 13,748,272 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1014,088,994 - 14,089,127 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map10q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
Snora64
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81014,252,671 - 14,252,804 (+)NCBIGRCr8
mRatBN7.21013,748,139 - 13,748,272 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1013,748,139 - 13,748,272 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1014,088,994 - 14,089,127 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map10q12NCBI
SNORA64
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38161,962,973 - 1,963,106 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl161,962,973 - 1,963,106 (-)EnsemblGRCh38hg38GRCh38
GRCh37162,012,974 - 2,013,107 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36161,952,975 - 1,953,108 (-)NCBINCBI36Build 36hg18NCBI36
Build 34161,952,974 - 1,953,108NCBI
Celera162,225,156 - 2,225,289 (-)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef161,937,101 - 1,937,234 (-)NCBIHuRef
CHM1_1162,012,920 - 2,013,053 (-)NCBICHM1_1
T2T-CHM13v2.0161,982,932 - 1,983,065 (-)NCBIT2T-CHM13v2.0
Snora64
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391724,939,763 - 24,939,879 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1724,939,746 - 24,939,879 (+)EnsemblGRCm39 Ensembl
GRCm381724,720,789 - 24,720,905 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1724,720,772 - 24,720,905 (+)EnsemblGRCm38mm10GRCm38
MGSCv371724,857,734 - 24,857,850 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361724,448,389 - 24,448,505 (+)NCBIMGSCv36mm8
Celera1725,243,916 - 25,244,032 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1712.51NCBI
LOC119864845
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha2025,076,895 - 25,076,968 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02025,191,580 - 25,191,653 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12024,888,502 - 24,888,575 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02025,235,593 - 25,235,666 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02025,295,371 - 25,295,444 (-)NCBIUU_Cfam_GSD_1.0


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9589136Insul27Insulin level QTL 2710.460.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)101147401056474010Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10538701450387014Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10538701450387014Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
634329Pia15Pristane induced arthritis QTL 153.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10124158324Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10637574651375746Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135225947Rat
7387235Uae41Urinary albumin excretion QTL 415.260.1874urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)10129497586Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)10580199062146030Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat
737820Alc9Alcohol consumption QTL 92.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10514402719233348Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10538701450387014Rat
631828Alc5Alcohol consumption QTL 52.4consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10514402717245662Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138328221Rat
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
631660Hcar1Hepatocarcinoma resistance QTL 13.40.0001liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)10615418215990232Rat
1576304Schws7Schwannoma susceptibility QTL 70.0115nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)10476552719816042Rat
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142315980Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
9590268Scort13Serum corticosterone level QTL 133.260.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
9590310Scort19Serum corticosterone level QTL 196.30.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005490872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000081773
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1013,748,139 - 13,748,272 (+)Ensembl
RefSeq Acc Id: XR_005490872
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81014,252,671 - 14,252,804 (+)NCBI
mRatBN7.21013,748,139 - 13,748,272 (+)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-25827 BioCyc
Ensembl Genes ENSRNOG00000059404 Ensembl
NCBI Gene LOC120095398 ENTREZGENE
PhenoGen Snora64 PhenoGen
RatGTEx ENSRNOG00000059404 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-07-08 Snora64  small nucleolar RNA, H/ACA box 64  LOC120095398  small nucleolar RNA SNORA64/SNORA10 family  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2022-06-02 LOC120095398  small nucleolar RNA SNORA64/SNORA10 family  Snora64  small nucleolar RNA, H/ACA box 64  Data merged from RGD:15012539 737654 PROVISIONAL
2021-01-27 LOC120095398  small nucleolar RNA SNORA64/SNORA10 family      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 Snora64  small nucleolar RNA, H/ACA box 64      Symbol and Name status set to provisional 45752 PROVISIONAL