LOC120095017 (uncharacterized LOC120095017) - Rat Genome Database
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Summary
References
Genomics
Variants
QTLs in Region (mRatBN7.2)
Expression
RNA-SEQ Expression
Sequence
Nucleotide Sequences
Reference Sequences
Additional Information
External Database Links
Nomenclature History
Gene: LOC120095017 (uncharacterized LOC120095017) Rattus norvegicus
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Analyze
General
Array IDs
Symbol:
LOC120095017
Name:
uncharacterized LOC120095017
RGD ID:
41077137
Description:
Type:
ncrna
RefSeq Status:
MODEL
Latest Assembly:
mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat Assembly
Chr
Position (strand)
Source
Genome Browsers
JBrowse
NCBI
UCSC
Ensembl
GRCr8
10
5,132,367 - 5,151,573 (+)
NCBI
GRCr8
mRatBN7.2
10
4,625,438 - 4,644,624 (+)
NCBI
mRatBN7.2
mRatBN7.2
Cytogenetic Map
10
q11
NCBI
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Annotation
Click to see Annotation Summary View
References
Genomics
.
Variants
.
Variants in LOC120095017
146 total Variants
QTLs in Region (mRatBN7.2)
1 to 9 of 9 rows
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The following
QTLs
overlap with this region.
Full Report
CSV
TAB
Printer
Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
634329
Pia15
Pristane induced arthritis QTL 15
3.1
joint integrity trait (VT:0010548)
joint inflammation composite score (CMO:0000919)
10
1
24158324
Rat
2293680
Bss40
Bone structure and strength QTL 40
5.66
0.0001
femur strength trait (VT:0010010)
femur total energy absorbed before break (CMO:0001677)
10
1
35225947
Rat
7387235
Uae41
Urinary albumin excretion QTL 41
5.26
0.1874
urine albumin amount (VT:0002871)
urine albumin excretion rate (CMO:0000757)
10
1
29497586
Rat
10401803
Kidm50
Kidney mass QTL 50
kidney mass (VT:0002707)
both kidneys wet weight (CMO:0000085)
10
418344
45418344
Rat
7411611
Foco17
Food consumption QTL 17
18.7
0.001
eating behavior trait (VT:0001431)
feed conversion ratio (CMO:0001312)
10
1
42315980
Rat
631554
Bp133
Blood pressure QTL 133
0.005
arterial blood pressure trait (VT:2000000)
systolic blood pressure (CMO:0000004)
10
743364
63851208
Rat
1549898
Neuinf3
Neuroinflammation QTL 3
26.4
nervous system integrity trait (VT:0010566)
MHC Class II RT1A-positive spinal cord ventral horn area to total spinal cord ventral horn area ratio (CMO:0001980)
10
3406320
5387112
Rat
634327
Hc4
Hypercalciuria QTL 4
2.4
urine calcium amount (VT:0002985)
urine calcium excretion rate (CMO:0000763)
10
1
38328221
Rat
70223
Bp57
Blood pressure QTL 57
5
arterial blood pressure trait (VT:2000000)
systolic blood pressure (CMO:0000004)
10
1
80676123
Rat
1 to 9 of 9 rows
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Expression
RNA-SEQ Expression
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
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Strain/Cell Line
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Tissue
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Geo Sample Id
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Reference
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Sequence
Nucleotide Sequences
1 to 4 of 4 rows
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All Rows
RefSeq Transcripts
XR_005489992
(Get FASTA)
NCBI Sequence Viewer
Search GEO for Microarray Profiles
XR_010055507
(Get FASTA)
NCBI Sequence Viewer
Search GEO for Microarray Profiles
XR_010055508
(Get FASTA)
NCBI Sequence Viewer
Search GEO for Microarray Profiles
GenBank Nucleotide
JAXUCZ010000010
(Get FASTA)
NCBI Sequence Viewer
Search GEO for Microarray Profiles
1 to 4 of 4 rows
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Reference Sequences
0 to 0 of 0 rows
3
5
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100
All Rows
RefSeq Acc Id:
XR_005489992
Type:
NON-CODING
Position:
Rat Assembly
Chr
Position (strand)
Source
GRCr8
10
5,132,369 - 5,151,573 (+)
NCBI
mRatBN7.2
10
4,625,438 - 4,644,624 (+)
NCBI
RefSeq Acc Id:
XR_010055507
Type:
NON-CODING
Position:
Rat Assembly
Chr
Position (strand)
Source
GRCr8
10
5,133,455 - 5,151,573 (+)
NCBI
RefSeq Acc Id:
XR_010055508
Type:
NON-CODING
Position:
Rat Assembly
Chr
Position (strand)
Source
GRCr8
10
5,132,367 - 5,151,573 (+)
NCBI
0 to 0 of 0 rows
3
5
10
20
100
All Rows
Additional Information
External Database Links
1 to 3 of 3 rows
3
5
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20
40
100
All Rows
Database
Acc Id
Source(s)
BioCyc Gene
G2FUF-26153
BioCyc
NCBI Gene
LOC120095017
ENTREZGENE
PhenoGen
LOC120095017
PhenoGen
1 to 3 of 3 rows
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Nomenclature History
Date
Current Symbol
Current Name
Previous Symbol
Previous Name
Description
Reference
Status
2021-01-27
LOC120095017
uncharacterized LOC120095017
Symbol and Name status set to provisional
70820
PROVISIONAL