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Gene: Ccnjl (cyclin J-like) Rattus norvegicus

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Symbol:

Ccnjl

Name:

cyclin J-like

RGD ID:

1561384

Description:

Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Predicted to be involved in G1/S transition of mitotic cell cycle. Predicted to be part of cyclin-dependent protein kinase holoenzyme complex. Predicted to be active in cytoplasm; microtubule organizing center; and nucleus. Orthologous to human CCNJL (cyclin J like); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; amitrole; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

cyclin-J-like protein; LOC303059; MGC116253; similar to novel protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CCNJL (cyclin J like)	RGD	RGD
Mus musculus (house mouse):	Ccnjl (cyclin J-like)	RGD	RGD
Chinchilla lanigera (long-tailed chinchilla):	Ccnjl (cyclin J like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CCNJL (cyclin J like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CCNJL (cyclin J like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ccnjl (cyclin J like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CCNJL (cyclin J like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CCNJL (cyclin J like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ccnjl (cyclin J like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	FOXK2 (forkhead box K2)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	CCNJL (cyclin J like)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ccnjl (cyclin J-like)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ccnjl (cyclin J-like)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	CycJ	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	CLN3	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	CLN2	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	CLN1	Alliance	DIOPT (Ensembl Compara\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	28,497,144 - 28,554,877 (+)	NCBI		GRCr8
mRatBN7.2	10	27,995,682 - 28,053,428 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	27,995,679 - 28,053,426 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	32,756,727 - 32,813,888 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	1,295,116 - 1,352,277 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	27,727,272 - 27,784,466 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	29,122,713 - 29,181,610 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	29,123,273 - 29,182,568 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	28,961,450 - 29,020,118 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	28,627,418 - 28,684,596 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	10	27,487,982 - 27,545,122 (+)	NCBI		Celera
Cytogenetic Map	10	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ccnjl	Rat	genetic disease		ISO	CCNJL (Homo sapiens)	8554872	ClinVar Annotator: match by term: Inborn genetic diseases	ClinVar

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ccnjl	Rat	17beta-estradiol	multiple interactions	ISO	CCNJL (Homo sapiens)	6480464	[Estradiol co-treated with Norethindrone Acetate] results in increased expression of CCNJL mRNA	CTD	PMID:22217510
Ccnjl	Rat	2,2',5,5'-tetrachlorobiphenyl	decreases expression	ISO	CCNJL (Homo sapiens)	6480464	2 more ...	CTD	PMID:36804509
Ccnjl	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	ISO	CCNJL (Homo sapiens)	6480464	Tetrachlorodibenzodioxin results in increased expression of CCNJL mRNA	CTD	PMID:20106945 and PMID:21632981
Ccnjl	Rat	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	EXP		6480464	Tetrachlorodibenzodioxin results in decreased expression of CCNJL mRNA	CTD	PMID:33387578
Ccnjl	Rat	2,3,7,8-tetrachlorodibenzodioxine	multiple interactions	ISO	Ccnjl (Mus musculus)	6480464	[Tetrachlorodibenzodioxin co-treated with AHR gene mutant form] results in decreased expression of CCNJL mRNA	CTD	PMID:19465110
Ccnjl	Rat	5-fluorouracil	affects expression	ISO	CCNJL (Homo sapiens)	6480464	Fluorouracil affects the expression of CCNJL mRNA	CTD	PMID:16584549
Ccnjl	Rat	acrolein	multiple interactions	ISO	CCNJL (Homo sapiens)	6480464	[Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] results in increased oxidation of CCNJL mRNA and [Air Pollutants results in increased abundance of [Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone]] which results in increased oxidation of CCNJL mRNA	CTD	PMID:32699268
Ccnjl	Rat	all-trans-retinoic acid	decreases expression	ISO	CCNJL (Homo sapiens)	6480464	Tretinoin results in decreased expression of CCNJL mRNA	CTD	PMID:33167477
Ccnjl	Rat	alpha-pinene	multiple interactions	ISO	CCNJL (Homo sapiens)	6480464	[Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] results in increased oxidation of CCNJL mRNA and [Air Pollutants results in increased abundance of [Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone]] which results in increased oxidation of CCNJL mRNA	CTD	PMID:32699268
Ccnjl	Rat	amitrole	decreases expression	EXP		6480464	Amitrole results in decreased expression of CCNJL mRNA	CTD	PMID:38685447
Ccnjl	Rat	arsane	multiple interactions	ISO	CCNJL (Homo sapiens)	6480464	[sodium arsenate results in increased abundance of Arsenic] which results in increased expression of CCNJL mRNA	CTD	PMID:32525701
Ccnjl	Rat	arsenic atom	multiple interactions	ISO	CCNJL (Homo sapiens)	6480464	[sodium arsenate results in increased abundance of Arsenic] which results in increased expression of CCNJL mRNA	CTD	PMID:32525701
Ccnjl	Rat	arsenous acid	decreases expression	ISO	Ccnjl (Mus musculus)	6480464	Arsenic Trioxide results in decreased expression of CCNJL mRNA	CTD	PMID:35676786
Ccnjl	Rat	benzo[a]pyrene	multiple interactions	ISO	Ccnjl (Mus musculus)	6480464	[Benzo(a)pyrene co-treated with benz(a)anthracene co-treated with benzo(b)fluoranthene co-treated with chrysene] results in decreased expression of CCNJL mRNA	CTD	PMID:27858113
Ccnjl	Rat	benzo[a]pyrene	decreases methylation	ISO	CCNJL (Homo sapiens)	6480464	Benzo(a)pyrene results in decreased methylation of CCNJL promoter	CTD	PMID:27901495
Ccnjl	Rat	benzo[b]fluoranthene	decreases expression	ISO	Ccnjl (Mus musculus)	6480464	benzo(b)fluoranthene results in decreased expression of CCNJL mRNA	CTD	PMID:26377693
Ccnjl	Rat	benzo[b]fluoranthene	multiple interactions	ISO	Ccnjl (Mus musculus)	6480464	[Benzo(a)pyrene co-treated with benz(a)anthracene co-treated with benzo(b)fluoranthene co-treated with chrysene] results in decreased expression of CCNJL mRNA	CTD	PMID:27858113
Ccnjl	Rat	Benzo[k]fluoranthene	decreases expression	ISO	Ccnjl (Mus musculus)	6480464	benzo(k)fluoranthene results in decreased expression of CCNJL mRNA	CTD	PMID:26377693
Ccnjl	Rat	bisphenol A	affects expression	EXP		6480464	bisphenol A affects the expression of CCNJL mRNA	CTD	PMID:25181051
Ccnjl	Rat	bisphenol A	increases expression	ISO	Ccnjl (Mus musculus)	6480464	bisphenol A results in increased expression of CCNJL mRNA	CTD	PMID:32156529
Ccnjl	Rat	bisphenol A	multiple interactions	ISO	CCNJL (Homo sapiens)	6480464	[bisphenol A co-treated with Fulvestrant] results in decreased methylation of CCNJL gene	CTD	PMID:31601247
Ccnjl	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of CCNJL mRNA	CTD	PMID:34947998
Ccnjl	Rat	carbon nanotube	increases expression	ISO	Ccnjl (Mus musculus)	6480464	Nanotubes and Carbon results in increased expression of CCNJL mRNA	CTD	PMID:25554681
Ccnjl	Rat	chloroprene	decreases expression	EXP		6480464	Chloroprene results in decreased expression of CCNJL mRNA	CTD	PMID:23125180
Ccnjl	Rat	choline	multiple interactions	ISO	Ccnjl (Mus musculus)	6480464	[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in increased expression of CCNJL mRNA	CTD	PMID:20938992
Ccnjl	Rat	chrysene	multiple interactions	ISO	Ccnjl (Mus musculus)	6480464	[Benzo(a)pyrene co-treated with benz(a)anthracene co-treated with benzo(b)fluoranthene co-treated with chrysene] results in decreased expression of CCNJL mRNA	CTD	PMID:27858113
Ccnjl	Rat	copper(II) sulfate	increases expression	ISO	CCNJL (Homo sapiens)	6480464	Copper Sulfate results in increased expression of CCNJL mRNA	CTD	PMID:19549813
Ccnjl	Rat	Cuprizon	decreases expression	EXP		6480464	Cuprizone results in decreased expression of CCNJL mRNA	CTD	PMID:27523638
Ccnjl	Rat	cyclosporin A	increases expression	ISO	CCNJL (Homo sapiens)	6480464	Cyclosporine results in increased expression of CCNJL mRNA	CTD	PMID:20106945 and PMID:25562108
Ccnjl	Rat	diarsenic trioxide	decreases expression	ISO	Ccnjl (Mus musculus)	6480464	Arsenic Trioxide results in decreased expression of CCNJL mRNA	CTD	PMID:35676786
Ccnjl	Rat	dibenz[a,h]anthracene	decreases expression	ISO	Ccnjl (Mus musculus)	6480464	1 more ...	CTD	PMID:26377693
Ccnjl	Rat	Dibutyl phosphate	affects expression	ISO	CCNJL (Homo sapiens)	6480464	di-n-butylphosphoric acid affects the expression of CCNJL mRNA	CTD	PMID:37042841
Ccnjl	Rat	dioxygen	multiple interactions	EXP		6480464	[Oxygen deficiency co-treated with Blood Glucose deficiency co-treated with Particulate Matter] results in increased expression of CCNJL mRNA	CTD	PMID:33729688
Ccnjl	Rat	doxorubicin	decreases expression	ISO	CCNJL (Homo sapiens)	6480464	Doxorubicin results in decreased expression of CCNJL mRNA	CTD	PMID:29803840
Ccnjl	Rat	doxorubicin	decreases expression	ISO	Ccnjl (Mus musculus)	6480464	Doxorubicin results in decreased expression of CCNJL mRNA	CTD	PMID:36227756
Ccnjl	Rat	folic acid	multiple interactions	ISO	Ccnjl (Mus musculus)	6480464	[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in increased expression of CCNJL mRNA	CTD	PMID:20938992
Ccnjl	Rat	folic acid	decreases expression	ISO	Ccnjl (Mus musculus)	6480464	Folic Acid results in decreased expression of CCNJL mRNA	CTD	PMID:25629700
Ccnjl	Rat	fulvestrant	multiple interactions	ISO	CCNJL (Homo sapiens)	6480464	[bisphenol A co-treated with Fulvestrant] results in decreased methylation of CCNJL gene	CTD	PMID:31601247
Ccnjl	Rat	gentamycin	decreases expression	EXP		6480464	Gentamicins results in decreased expression of CCNJL mRNA	CTD	PMID:33387578
Ccnjl	Rat	glyphosate	increases methylation	EXP		6480464	Glyphosate results in increased methylation of CCNJL gene	CTD	PMID:31011160
Ccnjl	Rat	Indeno[1,2,3-cd]pyrene	decreases expression	ISO	Ccnjl (Mus musculus)	6480464	indeno(1 more ...	CTD	PMID:26377693
Ccnjl	Rat	iron dichloride	decreases expression	ISO	CCNJL (Homo sapiens)	6480464	ferrous chloride results in decreased expression of CCNJL mRNA	CTD	PMID:35984750
Ccnjl	Rat	L-methionine	multiple interactions	ISO	Ccnjl (Mus musculus)	6480464	[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in increased expression of CCNJL mRNA	CTD	PMID:20938992
Ccnjl	Rat	lead(0)	affects expression	ISO	CCNJL (Homo sapiens)	6480464	Lead affects the expression of CCNJL mRNA	CTD	PMID:28903495
Ccnjl	Rat	leflunomide	increases expression	ISO	CCNJL (Homo sapiens)	6480464	leflunomide results in increased expression of CCNJL mRNA	CTD	PMID:28988120
Ccnjl	Rat	menadione	affects expression	ISO	CCNJL (Homo sapiens)	6480464	Vitamin K 3 affects the expression of CCNJL mRNA	CTD	PMID:20044591
Ccnjl	Rat	methoxychlor	affects methylation	EXP		6480464	Methoxychlor affects the methylation of CCNJL gene	CTD	PMID:35440735
Ccnjl	Rat	ozone	multiple interactions	ISO	CCNJL (Homo sapiens)	6480464	[Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] results in increased oxidation of CCNJL mRNA more ...	CTD	PMID:32699268
Ccnjl	Rat	paracetamol	increases expression	ISO	CCNJL (Homo sapiens)	6480464	Acetaminophen results in increased expression of CCNJL mRNA	CTD	PMID:29067470
Ccnjl	Rat	sodium arsenate	multiple interactions	ISO	CCNJL (Homo sapiens)	6480464	[sodium arsenate results in increased abundance of Arsenic] which results in increased expression of CCNJL mRNA	CTD	PMID:32525701
Ccnjl	Rat	sodium arsenite	decreases expression	ISO	CCNJL (Homo sapiens)	6480464	sodium arsenite results in decreased expression of CCNJL mRNA	CTD	PMID:34032870
Ccnjl	Rat	sulforaphane	increases expression	ISO	CCNJL (Homo sapiens)	6480464	sulforaphane results in increased expression of CCNJL mRNA	CTD	PMID:26833863
Ccnjl	Rat	sunitinib	decreases expression	ISO	CCNJL (Homo sapiens)	6480464	Sunitinib results in decreased expression of CCNJL mRNA	CTD	PMID:31533062
Ccnjl	Rat	temozolomide	increases expression	ISO	CCNJL (Homo sapiens)	6480464	Temozolomide results in increased expression of CCNJL mRNA	CTD	PMID:31758290
Ccnjl	Rat	tetraphene	decreases expression	ISO	Ccnjl (Mus musculus)	6480464	benz(a)anthracene results in decreased expression of CCNJL mRNA	CTD	PMID:26377693
Ccnjl	Rat	tetraphene	multiple interactions	ISO	Ccnjl (Mus musculus)	6480464	[Benzo(a)pyrene co-treated with benz(a)anthracene co-treated with benzo(b)fluoranthene co-treated with chrysene] results in decreased expression of CCNJL mRNA	CTD	PMID:27858113
Ccnjl	Rat	titanium dioxide	decreases expression	ISO	Ccnjl (Mus musculus)	6480464	titanium dioxide results in decreased expression of CCNJL mRNA	CTD	PMID:27760801
Ccnjl	Rat	titanium dioxide	decreases methylation	ISO	Ccnjl (Mus musculus)	6480464	titanium dioxide results in decreased methylation of CCNJL gene and titanium dioxide results in decreased methylation of CCNJL promoter	CTD	PMID:35295148
Ccnjl	Rat	triphenyl phosphate	affects expression	ISO	CCNJL (Homo sapiens)	6480464	triphenyl phosphate affects the expression of CCNJL mRNA	CTD	PMID:37042841
Ccnjl	Rat	triptonide	increases expression	ISO	Ccnjl (Mus musculus)	6480464	triptonide results in increased expression of CCNJL mRNA	CTD	PMID:33045310
Ccnjl	Rat	valproic acid	affects expression	ISO	CCNJL (Homo sapiens)	6480464	Valproic Acid affects the expression of CCNJL mRNA	CTD	PMID:25979313

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ccnjl	Rat	G1/S transition of mitotic cell cycle	involved_in	IBA	CGD:CAL0000185532 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ccnjl	Rat	cyclin-dependent protein kinase holoenzyme complex	part_of	IBA	MGI:108042 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Ccnjl	Rat	cytoplasm	is_active_in	IBA	FB:FBgn0000404 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Ccnjl	Rat	microtubule organizing center	is_active_in	IBA	PANTHER:PTN007424001 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Ccnjl	Rat	nucleus	is_active_in	IBA	FB:FBgn0000404 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Ccnjl	Rat	nucleus	located_in	IEA	UniProtKB-SubCell:SL-0191	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Ccnjl	Rat	nucleus	located_in	IEA	UniProtKB-KW:KW-0539	1600115	GO_REF:0000043	UniProt	GO_REF:0000043

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ccnjl	Rat	cyclin-dependent protein serine/threonine kinase regulator activity	enables	IBA	CGD:CAL0000175354 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Ccnjl	Rat	protein binding	enables	ISO	CCNJL (Homo sapiens)	1624291	UniProtKB:P31930 more ...	RGD	PMID:25416956 more ...
Ccnjl	Rat	protein kinase binding	enables	IEA	ARBA:ARBA00028598	1600115	GO_REF:0000117	UniProt	GO_REF:0000117

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
3.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

PMID:8889548

Ccnjl
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	28,497,144 - 28,554,877 (+)	NCBI		GRCr8
mRatBN7.2	10	27,995,682 - 28,053,428 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	27,995,679 - 28,053,426 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	32,756,727 - 32,813,888 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	1,295,116 - 1,352,277 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	27,727,272 - 27,784,466 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	29,122,713 - 29,181,610 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	29,123,273 - 29,182,568 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	28,961,450 - 29,020,118 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	28,627,418 - 28,684,596 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	10	27,487,982 - 27,545,122 (+)	NCBI		Celera
Cytogenetic Map	10	q21	NCBI

CCNJL
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	160,249,083 - 160,339,570 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	160,249,083 - 160,345,396 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	159,676,090 - 159,766,577 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	159,611,249 - 159,672,151 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	5	155,711,187 - 155,772,085 (-)	NCBI		Celera
Cytogenetic Map	5	q33.3	NCBI
HuRef	5	154,772,618 - 154,833,455 (-)	NCBI		HuRef
CHM1_1	5	159,111,668 - 159,172,565 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	160,777,639 - 160,868,099 (-)	NCBI		T2T-CHM13v2.0

Ccnjl
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	43,419,576 - 43,477,826 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	43,419,611 - 43,477,824 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	43,528,749 - 43,586,999 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	43,528,784 - 43,586,997 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	43,342,286 - 43,400,499 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	43,372,176 - 43,429,737 (+)	NCBI		MGSCv36	mm8
Celera	11	48,151,200 - 48,209,105 (+)	NCBI		Celera
Cytogenetic Map	11	B1.1	NCBI
cM Map	11	25.78	NCBI

Ccnjl
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955408	14,119,668 - 14,166,418 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955408	14,119,901 - 14,165,545 (-)	NCBI	ChiLan1.0	ChiLan1.0

CCNJL
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	155,437,303 - 155,499,554 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	153,576,849 - 153,639,325 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	155,642,783 - 155,704,936 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	162,256,782 - 162,316,758 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	162,256,782 - 162,316,764 (-)	Ensembl	panpan1.1		panPan2

CCNJL
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	50,409,014 - 50,464,189 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	50,303,623 - 50,359,213 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	50,844,576 - 50,899,786 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	50,844,054 - 50,898,778 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	50,652,240 - 50,707,388 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	50,776,084 - 50,831,287 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	51,296,747 - 51,351,951 (+)	NCBI		UU_Cfam_GSD_1.0

Ccnjl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	104,815,904 - 104,868,049 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936515	3,265,244 - 3,317,370 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936515	3,265,250 - 3,317,395 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CCNJL
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	63,227,658 - 63,292,603 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	16	63,226,940 - 63,290,296 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	16	68,686,151 - 68,713,985 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CCNJL
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	62,611,876 - 62,673,912 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	62,611,452 - 62,672,617 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666034	14,931,730 - 14,993,399 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ccnjl
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624733	29,275,171 - 29,341,069 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624733	29,274,760 - 29,338,610 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Ccnjl
283 total Variants

Name	Type	Condition(s)	Position(s)	Clinical significance
GRCh38/hg38 2q14.1-21.3(chr2:118086324-134964738)x1	copy number loss	See cases [RCV000054058]	Chr2:118086324..134964738 [GRCh38] Chr2:118843900..135722308 [GRCh37] Chr2:118560370..135438778 [NCBI36] Chr2:2q14.1-21.3	pathogenic
GRCh38/hg38 2q14.3-22.1(chr2:123445762-140592538)x1	copy number loss	See cases [RCV000136714]	Chr2:123445762..140592538 [GRCh38] Chr2:124203338..141350107 [GRCh37] Chr2:123919808..141066577 [NCBI36] Chr2:2q14.3-22.1	pathogenic
GRCh38/hg38 2q21.1(chr2:130594216-131310557)x3	copy number gain	See cases [RCV000137619]	Chr2:130594216..131310557 [GRCh38] Chr2:131351789..132068130 [GRCh37] Chr2:131068259..131784600 [NCBI36] Chr2:2q21.1	uncertain significance
GRCh37/hg19 2p25.3-q37.3(chr2:14238-243048760)x3	copy number gain	not provided [RCV000752802]	Chr2:14238..243048760 [GRCh37] Chr2:2p25.3-q37.3	pathogenic
GRCh37/hg19 2q14.3-22.1(chr2:128490257-138210164)x1	copy number loss	See cases [RCV000445892]	Chr2:128490257..138210164 [GRCh37] Chr2:2q14.3-22.1	pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:12771-242783384)	copy number gain	See cases [RCV000512056]	Chr2:12771..242783384 [GRCh37] Chr2:2p25.3-q37.3	pathogenic
GRCh37/hg19 2q21.1-21.2(chr2:130920847-134220436)x3	copy number gain	See cases [RCV000511730]	Chr2:130920847..134220436 [GRCh37] Chr2:2q21.1-21.2	uncertain significance
GRCh37/hg19 2q21.1(chr2:130685932-131478005)x3	copy number gain	See cases [RCV000511540]	Chr2:130685932..131478005 [GRCh37] Chr2:2q21.1	uncertain significance
Single allele	deletion	not provided [RCV000714264]	Chr2:40608411..146900718 [GRCh37] Chr2:2p22.1-q22.3	likely pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:12771-242783384)x3	copy number gain	See cases [RCV000511212]	Chr2:12771..242783384 [GRCh37] Chr2:2p25.3-q37.3	pathogenic
GRCh37/hg19 2q12.1-24.3(chr2:104172062-168223828)x1	copy number loss	Poly (ADP-Ribose) polymerase inhibitor response [RCV000626436]	Chr2:104172062..168223828 [GRCh37] Chr2:2q12.1-24.3	drug response
GRCh37/hg19 2q14.2-22.1(chr2:120571363-141627287)x1	copy number loss	See cases [RCV000512348]	Chr2:120571363..141627287 [GRCh37] Chr2:2q14.2-22.1	pathogenic
NM_001277083.2(POTEJ):c.2077G>C (p.Val693Leu)	single nucleotide variant	not provided [RCV004546042]	Chr2:130656837 [GRCh38] Chr2:131414410 [GRCh37] Chr2:2q21.1	likely benign
GRCh37/hg19 2q21.1(chr2:130874475-131765997)x1	copy number loss	not provided [RCV000682106]	Chr2:130874475..131765997 [GRCh37] Chr2:2q21.1	likely pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:15672-243101834)x3	copy number gain	not provided [RCV000752804]	Chr2:15672..243101834 [GRCh37] Chr2:2p25.3-q37.3	pathogenic
GRCh37/hg19 2q21.1(chr2:131391068-132046784)x3	copy number gain	not provided [RCV000850030]	Chr2:131391068..132046784 [GRCh37] Chr2:2q21.1	uncertain significance
Single allele	deletion	Neurodevelopmental disorder [RCV000787418]	Chr2:131198454..131632188 [GRCh37] Chr2:2q21.1	uncertain significance
GRCh37/hg19 2q21.1-21.2(chr2:130916858-134213436)x3	copy number gain	not provided [RCV000846479]	Chr2:130916858..134213436 [GRCh37] Chr2:2q21.1-21.2	uncertain significance
GRCh37/hg19 2q14.3-21.2(chr2:122952356-133826358)x1	copy number loss	See cases [RCV001194541]	Chr2:122952356..133826358 [GRCh37] Chr2:2q14.3-21.2	likely pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:1-243199373)	copy number gain	Mosaic trisomy 2 [RCV002280628]	Chr2:1..243199373 [GRCh37] Chr2:2p25.3-q37.3	pathogenic
GRCh37/hg19 2q14.3-22.2(chr2:122699106-143799629)x1	copy number loss	not provided [RCV001832883]	Chr2:122699106..143799629 [GRCh37] Chr2:2q14.3-22.2	pathogenic
GRCh37/hg19 2q13-22.3(chr2:111484468-146333604)x3	copy number gain	not provided [RCV001832896]	Chr2:111484468..146333604 [GRCh37] Chr2:2q13-22.3	pathogenic
GRCh37/hg19 2q13-22.3(chr2:112475655-145691999)x3	copy number gain	2q13q22.3 microduplication syndrome [RCV002226436]	Chr2:112475655..145691999 [GRCh37] Chr2:2q13-22.3	pathogenic
GRCh37/hg19 2q21.1(chr2:130817326-132099295)x1	copy number loss	not provided [RCV003484893]	Chr2:130817326..132099295 [GRCh37] Chr2:2q21.1	uncertain significance
NM_001277083.2(POTEJ):c.2618G>A (p.Arg873His)	single nucleotide variant	not provided [RCV003429278]	Chr2:130657378 [GRCh38] Chr2:131414951 [GRCh37] Chr2:2q21.1	benign
GRCh37/hg19 2q12.2-21.2(chr2:106755586-134302739)x1	copy number loss	not specified [RCV003986380]	Chr2:106755586..134302739 [GRCh37] Chr2:2q12.2-21.2	pathogenic
NM_001277083.2(POTEJ):c.2208C>T (p.His736=)	single nucleotide variant	not provided [RCV004811637]	Chr2:130656968 [GRCh38] Chr2:131414541 [GRCh37] Chr2:2q21.1	likely benign

Predicted Target Of

	Summary Value
Count of predictions:	238
Count of miRNA genes:	153
Interacting mature miRNAs:	196
Transcripts:	ENSRNOT00000005171
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
6893352	Bw100	Body weight QTL 100	0.33	0.6	body mass (VT:0001259)	body weight (CMO:0000012)	1	15906665	60906665	Rat
9589136	Insul27	Insulin level QTL 27	10.46	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	10	11474010	56474010	Rat
631564	Apr3	Acute phase response QTL 3	3.9		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	10	15275955	60275955	Rat
1298069	Bp168	Blood pressure QTL 168	5.5		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	10	26521957	98003205	Rat
724556	Pur2	Proteinuria QTL 2	5.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	22427500	90627625	Rat
8662860	Vetf10	Vascular elastic tissue fragility QTL 10			artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	10	6154182	73453136	Rat
2313066	Bss63	Bone structure and strength QTL 63	1.4	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	10	5387014	50387014	Rat
631554	Bp133	Blood pressure QTL 133		0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	743364	63851208	Rat
2313064	Bmd71	Bone mineral density QTL 71	0.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	10	5387014	50387014	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
70223	Bp57	Blood pressure QTL 57	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	1	80676123	Rat
1354587	Kidm21	Kidney mass QTL 21	3.3		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	10	15028513	60430477	Rat
6893350	Bw99	Body weight QTL 99	0.87	0.16	body mass (VT:0001259)	body weight (CMO:0000012)	1	15906665	60906665	Rat
1578761	Stresp21	Stress response QTL 21	3.3		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	6375746	51375746	Rat
70224	Eae3	Experimental allergic encephalomyelitis QTL 3	4.1		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	10	26521957	61345413	Rat
2293680	Bss40	Bone structure and strength QTL 40	5.66	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	10	1	35225947	Rat
7387235	Uae41	Urinary albumin excretion QTL 41	5.26	0.1874	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	10	1	29497586	Rat
2298544	Neuinf9	Neuroinflammation QTL 9	4.6		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	10	5801990	62146030	Rat
2298480	Eau7	Experimental allergic uveoretinitis QTL 7		0.0049	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	10	27957626	34490668	Rat
10401803	Kidm50	Kidney mass QTL 50			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	10	418344	45418344	Rat
2313081	Bss64	Bone structure and strength QTL 64	1.3	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	10	5387014	50387014	Rat
1554317	Bmd4	Bone mineral density QTL 4	9.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	19816042	99406971	Rat
1598852	Anxrr19	Anxiety related response QTL 19	5.07		body movement coordination trait (VT:0005424)	number of rearing movements in an experimental apparatus (CMO:0001752)	10	18167841	63167841	Rat
2313087	Bmd80	Bone mineral density QTL 80	3.2	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	10	19606483	64606483	Rat
634327	Hc4	Hypercalciuria QTL 4	2.4		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	10	1	38328221	Rat
1581497	Esta1	Estrogen-induced thymic atrophy QTL 1			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	21329805	61345413	Rat
631531	Iresp2	Immunoglobin response QTL2	6.3		blood immunoglobulin E amount (VT:0002492)	serum immunoglobulin E level (CMO:0002101)	10	22918268	36400810	Rat
2313095	Bss62	Bone structure and strength QTL 62	1.5	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	5387014	50387014	Rat
631532	Cm50	Cardiac mass QTL 50	6.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	10	17907113	51786432	Rat
2300171	Bmd58	Bone mineral density QTL 58	4.9	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	26944628	71944628	Rat
7411611	Foco17	Food consumption QTL 17	18.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	10	1	42315980	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
2301967	Cm73	Cardiac mass QTL 73	4.55		heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	14487011	89062041	Rat
2303118	Mamtr7	Mammary tumor resistance QTL 7		0.003	mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	10	9658275	104670812	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14487011	104060283	Rat
9590268	Scort13	Serum corticosterone level QTL 13	3.26	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	11474010	56474010	Rat
2313104	Bss61	Bone structure and strength QTL 61	0.9	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	10	5387014	50387014	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6357896	96121100	Rat
9590310	Scort19	Serum corticosterone level QTL 19	6.3	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	11474010	56474010	Rat
10402859	Bp381	Blood pressure QTL 381		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	27606468	72606468	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14487011	107057807	Rat
2292441	Bp308	Blood pressure QTL 308			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	27606468	72606468	Rat
2313055	Bw96	Body weight QTL 96	3.6	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	10	19606483	64606483	Rat
631542	Bp82	Blood pressure QTL 82	6.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	26521957	98952741	Rat

RH134927

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	28,053,264 - 28,053,420 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	29,181,285 - 29,181,440	NCBI	Rnor6.0
Rnor_5.0	10	29,019,950 - 29,020,105	UniSTS	Rnor5.0
RGSC_v3.4	10	28,684,435 - 28,684,590	UniSTS	RGSC3.4
Celera	10	27,544,961 - 27,545,116	UniSTS
RH 3.4 Map	10	296.6	UniSTS
Cytogenetic Map	10	q21	UniSTS

AU047545

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	28,005,810 - 28,005,953 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	29,132,832 - 29,132,974	NCBI	Rnor6.0
Rnor_5.0	10	28,971,497 - 28,971,639	UniSTS	Rnor5.0
RGSC_v3.4	10	28,636,928 - 28,637,070	UniSTS	RGSC3.4
Celera	10	27,497,491 - 27,497,633	UniSTS
Cytogenetic Map	10	q21	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001037773	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006246133	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063268964	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC099113	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BF407140	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BI289615	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000005171 ⟹ ENSRNOP00000005171

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	27,995,679 - 28,053,426 (+)	Ensembl
Rnor_6.0 Ensembl	10	29,123,273 - 29,182,568 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000078415 ⟹ ENSRNOP00000069867

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	28,037,557 - 28,053,420 (+)	Ensembl
Rnor_6.0 Ensembl	10	29,165,577 - 29,181,440 (+)	Ensembl

RefSeq Acc Id:

NM_001037773 ⟹ NP_001032862

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	28,497,757 - 28,554,877 (+)	NCBI
mRatBN7.2	10	27,996,301 - 28,053,426 (+)	NCBI
Rnor_6.0	10	29,123,322 - 29,181,446 (+)	NCBI
Rnor_5.0	10	28,961,450 - 29,020,118 (+)	NCBI
RGSC_v3.4	10	28,627,418 - 28,684,596 (+)	RGD
Celera	10	27,487,982 - 27,545,122 (+)	RGD

Sequence:

show sequence

ATGGATGAGCCGTGGTGGGAAGGGCGGGTCGCCTCGGACGTCCACTGCACTCTGCGCGAGAAGGAACTGAAGCTGCCCACCTTCCGTGCCCACTCCCCGCTCCTGAAGAGCCGGCGGTTCTTTGTAGA
CATTCTGACCCTGCTAAGCAGACACTGCCATCTCTGCCCCTCGGCCCGGCACCTGGCCATCTACCTTTTGGACCACTTTATGGACCAGTACAACGTCACCACCTCCAAGCAGCTGTACACTGTGGCTG
TCTCCTGCCTCCTGCTGGCAAGTAAGTTTGAGGACAGAGAAGACCGTGTGCCCAAATTGGATCAGATAAACAGTACAAGGATCCTGAGCAGCCATAACTTCTCCCTCACCAAGAAGGAGCTGCTCACC
ACAGAACTTCTGCTCCTGGAGGCTTTCAGCTGGGACCTTTGCCTGCCCACGCCCGCCCACTTTCTGGACTACTACCTCTTGGCCTCCATCAGCCAGAAGGACCACCACTGCCACACATGGCCCACCAC
CTGCCTCCGAAAGACCAAAGAGTGCCTCAAGGAGTACGCCCACTACTTCCTGGAAGTTACCCTACAAGATCATATATTTTACAAATTCCAGCCTTCTGTGGTCGCTGCAGCCTGTGTTGGGGCCTCCA
GGATCTGCCTTCAGCTTTCTCCATACTGGACGAGAGACTTGCAGAGGGTCTCGAACTACTCCCTGGAGCATCTCAGCACGTGCATCGAAATCCTGCTGGTAGCATATGACAATGTCCTCAAGGATGCC
GTTGCAGTCAAGAGCCAGGCACTGGCCATGGTGCCCAGCTCATCATCAGCTCCCACCCAAGTGCTGTTCCAACCACCCACCTACCCTTCTCTCAGCCAGCCACCGCCAACAACACTAGCCCAGTTCCA
GAGTCCAGCGCAGGACTTGTGCTTGGCATATCGGGACTCGTTGCAGGCCCACCGCTCAGGGACCCTGCTCTCAGGAGACACTGGTCCATCCCTCCACACGCCATACCCAACCCTTCAGCCCTTGGATA
TGTGTCCTGTGCCCGTTCCTGCATCCCTTAGCATGCAGATGGCCATAGCAGCTGAACCCAGGCACTGCCTTACTGCCACCTACGGAAGCAGCTACTTCAGCGGGAGCCATATGTTCCCCACAGGCTGT
TTTGACAGCTAGGCCACAATTGGACCATAGGGAGAATCCTGGAAGACCCGACCAAGGAAGTAAATACCTAAGAAGAGAACTAGTCCAGGTGAGGCAAAGAACCTAGTATCTTTCAATAGAGAGGGTCT
GTGCTTTTTTTTAAAAAAAAAAGAAACCAACAAAACAAAACATCCAGGGACATATCTCACCCAACAGGGTCTCTCTGGGAAACCTCTTTCATGTGTGCTTGGAGGACAAAGACATGGCTCTGTGACCA
TTCCCTTGAGCTGGGGGATCCAATGGAGCGTATCAGACTGGAATTTGAGGACTGCATACAGATCAGTACTACATCTGGGCTTCTCAAAGACTACTTTTCACAGCTATGCCACTGAAAAAGAAGGGGCA
CCTGGCACGTTTGTCTATGTCCCTAGAAGATCCATCCTGAGTGTTCTTCACTCCCTAGCTCTGCTCCATGGGCCCCATGGCCAGTGTTTATGCCGAGCACTGACCCCACGGGGCCCAGTGAGCAGCTA
TCTTGCCCTCTGTATTTGAACCCCCGATCTTTTCATTCTTCTAGATATTCCACATGCTGCTGCTTCCTGGAACAATCTAGCTTTCTATCCTGCAAAAAATCATCTTGTTTACATACCGTGTCAGGGAT
TTTTGTGATACTTGAAAATTCCGTAGGAGCAAAAAGTTTTAATTGCCTCACTGTCTGTCCCACACGAGGCTGTATCTTTTATTAACCCAACTCGGGACCAACTGGTGGATAACAACAGCGAGGATGAG
GATGCCACCCCTCCCCGTCTGGAAGAGTCCACCCCTGGGATGCTAGTGTTCTCCTGTTGGACTTGGATTACTGCCCCCTGGTGGGGGAATGTTGTTGAGAGGAAGACAAAGGTTTGAACTGGTCCTCA
CTTCCCTCCACCACATGCTCATAGTTCTTAAACCGATCCCAGCTTTGAGTTTGGCCGATAATTAATCATGCTGTGGACTGTTATAAAAGTGGGGGGACTAATGGGGTATGTGACACCAGCATGGATAG
GCAAGAGACTGCTGGAGCAAAAGCCCATGTCTGGGATCTGCAGTGCAAGGGCTCAGGAACACCGTCACCGTGTGCAATATGTTATGATTGTGACTCACAGCCTGTGCTTAAGATGTTCTTGTGCTTGC
GGTCTTTTTTTTTTTTGTTGTTATTGCTGTTGTTGTTTTCTGGTCAGGGGATTTGTTGTTCACCCATCAGAATTGGAAGGGAGGTGCAAAAGACCACAGAAACAAAAATTGTAATTTTGTTTCAGTTG
GTTTTTGTTTTCTTTTACTTTGCCAGGAGATTTTTTTTTTTTTTTGAGATGATCAGATGTAGCTAAGGCTACCCTCAAACTTAGTGCATAGCCAAAGCTGGCCTTGAACTCCTGATCCTCCTGCTTTA
GCCTCCCATGTTTGCCACCACACCTAGTCTCCCGGCTTTGACACATTTTCTGATCCAAGAGACCCTAGCAGGGACTGCCGGGAAGGTGGCCACATGCTACTGAGTCGGATTTAACAGTGACAGGGCTT
TTCTAAGCAGATGAATGTCTCATGGAAACAGAACAAGGAAAGAGCTGGAGGCTGTCATTTTCTCTATTAGCATAGGAACCTGCACATTCGTTTGTTATTTGTATGTGTGTGTGTGTATGTTTTGGCTC
CTCCCCCTCCACCTCCTCCACCAGCCTCTGTATTTATATGCAACTGATTTGGAGTCTGTTATATCTGTCTATTCTGGGCTGGGGCTTTTGAGAGAAGTATCTCCACGGGAGCCCCAGAACTAGCCTGA
TTCTCAGGATCAGATGTCCTTCAATAAACACATCACCTGCTCTTGG

hide sequence

RefSeq Acc Id:

XM_006246133 ⟹ XP_006246195

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	28,497,147 - 28,554,872 (+)	NCBI
mRatBN7.2	10	27,995,682 - 28,053,428 (+)	NCBI
Rnor_6.0	10	29,122,713 - 29,181,610 (+)	NCBI
Rnor_5.0	10	28,961,450 - 29,020,118 (+)	NCBI

Sequence:

show sequence

TGCGAGCCGCGGCGGGACCGAGCGCAGGCAGGGGCGCGCCGGTGGCCGGGCGGGACGGGCTGCG
GAGGCGGCGGTCGCGAGCACGCGAGGCCAGGGGCCGGGCGGCCACCGGAGGGCACTACGTTCCCGGTGCGGGAAGGGACCCGCCACCCGCGGACCCCCACTCGGGGACAGCGATGCGGTGCGCCCCAA
GATCCCGATAGCCTTATATCTGCGGCGGTGATGGATGAGCCGTGGTGGGAAGGGCGGGTCGCCTCGGACGTCCACTGCACTCTGCGCGAGAAGGAACTGAAGCTGCCCACCTTCCGTGCCCACTCCCC
GCTCCTGAAGAGCCGGCGGTTCTTTGTAGACATTCTGACCCTGCTAAGCAGACACTGCCATCTCTGCCCCTCGGCCCGGCACCTGGCCATCTACCTTTTGGACCACTTTATGGACCAGTACAACGTCA
CCACCTCCAAGCAGCTGTACACTGTGGCTGTCTCCTGCCTCCTGCTGGCAAGTAAGTTTGAGGACAGAGAAGACCGTGTGCCCAAATTGGATCAGATAAACAGTACAAGGATCCTGAGCAGCCATAAC
TTCTCCCTCACCAAGAAGGAGCTGCTCACCACAGAACTTCTGCTCCTGGAGGCTTTCAGCTGGGACCTTTGCCTGCCCACGCCCGCCCACTTTCTGGACTACTACCTCTTGGCCTCCATCAGCCAGAA
GGACCACCACTGCCACACATGGCCCACCACCTGCCTCCGAAAGACCAAAGAGTGCCTCAAGGAGTACGCCCACTACTTCCTGGAAGTTACCCTACAAGATCATATATTTTACAAATTCCAGCCTTCTG
TGGTCGCTGCAGCCTGTGTTGGGGCCTCCAGGATCTGCCTTCAGCTTTCTCCATACTGGACGAGAGACTTGCAGAGGGTCTCGAACTACTCCCTGGAGCATCTCAGCACGTGCATCGAAATCCTGCTG
GTAGCATATGACAATGTCCTCAAGGATGCCGTTGCAGTCAAGAGCCAGGCACTGGCCATGGTGCCCAGCTCATCATCAGCTCCCACCCAAGTGCTGTTCCAACCACCCACCTACCCTTCTCTCAGCCA
GCCACCGCCAACAACACTAGCCCAGTTCCAGAGTCCAGCGCAGGACTTGTGCTTGGCATATCGGGACTCGTTGCAGGCCCACCGCTCAGGGACCCTGCTCTCAGGAGACACTGGTCCATCCCTCCACA
CGCCATACCCAACCCTTCAGCCCTTGGATATGTGTCCTGTGCCCGTTCCTGCATCCCTTAGCATGCAGATGGCCATAGCAGCTGAACCCAGGCACTGCCTTACTGCCACCTACGGAAGCAGCTACTTC
AGCGGGAGCCATATGTTCCCCACAGGCTGTTTTGACAGCTAGGCCACAATTGGACCATAGGGAGAATCCTGGAAGACCCGACCAAGGAAGTAAATACCTAAGAAGAGAACTAGTCCAGGTGAGGCAAA
GAACCTAGTATCTTTCAATAGAGAGGGTCTGTGCTTTTTTTTAAAAAAAAAAGAAACCAACAAAACAAAACATCCAGGGACATATCTCACCCAACAGGGTCTCTCTGGGAAACCTCTTTCATGTGTGC
TTGGAGGACAAAGACATGGCTCTGTGACCATTCCCTTGAGCTGGGGGATCCAATGGAGCGTATCAGACTGGAATTTGAGGACTGCATACAGATCAGTACTACATCTGGGCTTCTCAAAGACTACTTTT
CACAGCTATGCCACTGAAAAAGAAGGGGCACCTGGCACGTTTGTCTATGTCCCTAGAAGATCCATCCTGAGTGTTCTTCACTCCCTAGCTCTGCTCCATGGGCCCCATGGCCAGTGTTTATGCCGAGC
ACTGACCCCACGGGGCCCAGTGAGCAGCTATCTTGCCCTCTGTATTTGAACCCCCGATCTTTTCATTCTTCTAGATATTCCACATGCTGCTGCTTCCTGGAACAATCTAGCTTTCTATCCTGCAAAAA
ATCATCTTGTTTACATACCGTGTCAGGGATTTTTGTGATACTTGAAAATTCCGTAGGAGCAAAAAGTTTTAATTGCCTCACTGTCTGTCCCACACGAGGCTGTATCTTTTATTAACCCAACTCGGGAC
CAACTGGTGGATAACAACAGCGAGGATGAGGATGCCACCCCTCCCCGTCTGGAAGAGTCCACCCCTGGGATGCTAGTGTTCTCCTGTTGGACTTGGATTACTGCCCCCTGGTGGGGGAATGTTGTTGA
GAGGAAGACAAAGGTTTGAACTGGTCCTCACTTCCCTCCACCACATGCTCATAGTTCTTAAACCGATCCCAGCTTTGAGTTTGGCCGATAATTAATCATGCTGTGGACTGTTATAAAAGTGGGGGGAC
TAATGGGGTATGTGACACCAGCATGGATAGGCAAGAGACTGCTGGAGCAAAAGCCCATGTCTGGGATCTGCAGTGCAAGGGCTCAGGAACACCGTCACCGTGTGCAATATGTTATGATTGTGACTCAC
AGCCTGTGCTTAAGATGTTCTTGTGCTTGCGGTCTTTTTTTTTTTTGTTGTTATTGCTGTTGTTGTTTTCTGGTCAGGGGATTTGTTGTTCACCCATCAGAATTGGAAGGGAGGTGCAAAAGACCACA
GAAACAAAAATTGTAATTTTGTTTCAGTTGGTTTTTGTTTTCTTTTACTTTGCCAGGAGATTTTTTTTTTTTTTTGAGATGATCAGATGTAGCTAAGGCTACCCTCAAACTTAGTGCATAGCCAAAGC
TGGCCTTGAACTCCTGATCCTCCTGCTTTAGCCTCCCATGTTTGCCACCACACCTAGTCTCCCGGCTTTGACACATTTTCTGATCCAAGAGACCCTAGCAGGGACTGCCGGGAAGGTGGCCACATGCT
ACTGAGTCGGATTTAACAGTGACAGGGCTTTTCTAAGCAGATGAATGTCTCATGGAAACAGAACAAGGAAAGAGCTGGAGGCTGTCATTTTCTCTATTAGCATAGGAACCTGCACATTCGTTTGTTAT
TTGTATGTGTGTGTGTGTATGTTTTGGCTCCTCCCCCTCCACCTCCTCCACCAGCCTCTGTATTTATATGCAACTGATTTGGAGTCTGTTATATCTGTCTATTCTGGGCTGGGGCTTTTGAGAGAAGT
ATCTCCACGGGAGCCCCAGAACTAGCCTGATTCTCAGGATCAGATGTCCTTCAATAAACACATCACCTGCTCTTGGTCTCCGCTGCCTTTGTCTGGACATGTCTTAGCAGGTCAACCCTCCCCCACCT
CTCTACTCAACCTCAGTGAGAGTCTCCTTTGGGTGAGAGGTAAGAGAGATCAAGAGGTTTGTGAGCTTTCTCATGTCTGTGACAAAATGACCCAATAAAGCAACCTACAGGA

hide sequence

RefSeq Acc Id:

XM_063268964 ⟹ XP_063125034

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	28,497,144 - 28,554,872 (+)	NCBI


Protein RefSeqs	NP_001032862	(Get FASTA)	NCBI Sequence Viewer
	XP_006246195	(Get FASTA)	NCBI Sequence Viewer
	XP_063125034	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH99113	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000005171.4
	ENSRNOP00000069867.1

RefSeq Acc Id:

NP_001032862 ⟸ NM_001037773

- UniProtKB:

F1LPN6 (UniProtKB/TrEMBL), A6HDN1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDEPWWEGRVASDVHCTLREKELKLPTFRAHSPLLKSRRFFVDILTLLSRHCHLCPSARHLAIYLLDHFMDQYNVTTSKQLYTVAVSCLLLASKFEDREDRVPKLDQINSTRILSSHNFSLTKKELLT
TELLLLEAFSWDLCLPTPAHFLDYYLLASISQKDHHCHTWPTTCLRKTKECLKEYAHYFLEVTLQDHIFYKFQPSVVAAACVGASRICLQLSPYWTRDLQRVSNYSLEHLSTCIEILLVAYDNVLKDA
VAVKSQALAMVPSSSSAPTQVLFQPPTYPSLSQPPPTTLAQFQSPAQDLCLAYRDSLQAHRSGTLLSGDTGPSLHTPYPTLQPLDMCPVPVPASLSMQMAIAAEPRHCLTATYGSSYFSGSHMFPTGC
FDS

hide sequence

RefSeq Acc Id:	XP_006246195 ⟸ XM_006246133
- Peptide Label:	isoform X1
- UniProtKB:	F1LPN6 (UniProtKB/TrEMBL), A6HDN1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDEPWWEGRVASDVHCTLREKELKLPTFRAHSPLLKSRRFFVDILTLLSRHCHLCPSARHLAIY LLDHFMDQYNVTTSKQLYTVAVSCLLLASKFEDREDRVPKLDQINSTRILSSHNFSLTKKELLTTELLLLEAFSWDLCLPTPAHFLDYYLLASISQKDHHCHTWPTTCLRKTKECLKEYAHYFLEVTL QDHIFYKFQPSVVAAACVGASRICLQLSPYWTRDLQRVSNYSLEHLSTCIEILLVAYDNVLKDAVAVKSQALAMVPSSSSAPTQVLFQPPTYPSLSQPPPTTLAQFQSPAQDLCLAYRDSLQAHRSGT LLSGDTGPSLHTPYPTLQPLDMCPVPVPASLSMQMAIAAEPRHCLTATYGSSYFSGSHMFPTGCFDS hide sequence

Ensembl Acc Id:

ENSRNOP00000005171 ⟸ ENSRNOT00000005171

Ensembl Acc Id:

ENSRNOP00000069867 ⟸ ENSRNOT00000078415

RefSeq Acc Id:	XP_063125034 ⟸ XM_063268964
- Peptide Label:	isoform X2

Protein Domains

Cyclin C-terminal Cyclin-like

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1LPN6-F1-model_v2	AlphaFold	F1LPN6	1-387	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-25446	BioCyc
Ensembl Genes	ENSRNOG00000003893	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000005171.7	UniProtKB/TrEMBL
	ENSRNOT00000078415.2	UniProtKB/TrEMBL
Gene3D-CATH	Cyclin-like	UniProtKB/TrEMBL
InterPro	Cyclin	UniProtKB/TrEMBL
	Cyclin-like	UniProtKB/TrEMBL
	Cyclin-like_sf	UniProtKB/TrEMBL
	Cyclin_C	UniProtKB/TrEMBL
	Cyclin_N	UniProtKB/TrEMBL
KEGG Report	rno:303059	UniProtKB/TrEMBL
NCBI Gene	303059	ENTREZGENE
PANTHER	PTHR10177	UniProtKB/TrEMBL
Pfam	Cyclin_C	UniProtKB/TrEMBL
	Cyclin_N	UniProtKB/TrEMBL
PhenoGen	Ccnjl	PhenoGen
RatGTEx	ENSRNOG00000003893	RatGTEx
SMART	CYCLIN	UniProtKB/TrEMBL
	Cyclin_C	UniProtKB/TrEMBL
Superfamily-SCOP	Cyclin_like	UniProtKB/TrEMBL
UniProt	A6HDN1	ENTREZGENE, UniProtKB/TrEMBL
	F1LPN6	ENTREZGENE, UniProtKB/TrEMBL
	Q4KLM3_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-09-15	Ccnjl	cyclin J-like	LOC303059	similar to novel protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-02-09	LOC303059	similar to novel protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - ClinVar