Ccnjl (cyclin J-like) - Rat Genome Database

Name: Ccnjl
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Advanced Search (OLGA)

Gene: Ccnjl (cyclin J-like) Rattus norvegicus

Analyze

Symbol:

Ccnjl

Name:

cyclin J-like

RGD ID:

1561384

Description:

Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Predicted to be involved in G1/S transition of mitotic cell cycle. Predicted to be part of cyclin-dependent protein kinase holoenzyme complex. Predicted to be active in cytoplasm; microtubule organizing center; and nucleus. Orthologous to human CCNJL (cyclin J like); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; amitrole; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

cyclin-J-like protein; LOC303059; MGC116253; similar to novel protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CCNJL (cyclin J like)	RGD	RGD
Mus musculus (house mouse):	Ccnjl (cyclin J-like)	RGD	RGD
Chinchilla lanigera (long-tailed chinchilla):	Ccnjl (cyclin J like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CCNJL (cyclin J like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CCNJL (cyclin J like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ccnjl (cyclin J like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CCNJL (cyclin J like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CCNJL (cyclin J like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ccnjl (cyclin J like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	FOXK2 (forkhead box K2)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	CCNJL (cyclin J like)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ccnjl (cyclin J-like)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ccnjl (cyclin J-like)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	CycJ	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	CLN3	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	CLN2	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	CLN1	Alliance	DIOPT (Ensembl Compara\|PANTHER)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	28,497,144 - 28,554,877 (+)	NCBI		GRCr8
mRatBN7.2	10	27,995,682 - 28,053,428 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	27,995,679 - 28,053,426 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	32,756,727 - 32,813,888 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	1,295,116 - 1,352,277 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	27,727,272 - 27,784,466 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	29,122,713 - 29,181,610 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	29,123,273 - 29,182,568 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	28,961,450 - 29,020,118 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	28,627,418 - 28,684,596 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	10	27,487,982 - 27,545,122 (+)	NCBI		Celera
Cytogenetic Map	10	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

5-fluorouracil (ISO)

acrolein (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

amitrole (EXP)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

Benzo[k]fluoranthene (ISO)

bisphenol A (EXP,ISO)

carbon nanotube (ISO)

chloroprene (EXP)

choline (ISO)

chrysene (ISO)

copper(II) sulfate (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

diarsenic trioxide (ISO)

dibenz[a,h]anthracene (ISO)

Dibutyl phosphate (ISO)

dioxygen (EXP)

doxorubicin (ISO)

folic acid (ISO)

fulvestrant (ISO)

gentamycin (EXP)

glyphosate (EXP)

Indeno[1,2,3-cd]pyrene (ISO)

iron dichloride (ISO)

L-methionine (ISO)

lead(0) (ISO)

leflunomide (ISO)

menadione (ISO)

methoxychlor (EXP)

ozone (ISO)

paracetamol (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sulforaphane (ISO)

sunitinib (ISO)

temozolomide (ISO)

tetraphene (ISO)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

G1/S transition of mitotic cell cycle (IBA)

Cellular Component

cyclin-dependent protein kinase holoenzyme complex (IBA)

cytoplasm (IBA)

microtubule organizing center (IBA)

nucleus (IBA)

Molecular Function

cyclin-dependent protein serine/threonine kinase regulator activity (IBA)

protein binding (ISO)

protein kinase binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
3.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:8889548

Genomics

Comparative Map Data

Ccnjl
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	28,497,144 - 28,554,877 (+)	NCBI		GRCr8
mRatBN7.2	10	27,995,682 - 28,053,428 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	27,995,679 - 28,053,426 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	32,756,727 - 32,813,888 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	1,295,116 - 1,352,277 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	27,727,272 - 27,784,466 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	29,122,713 - 29,181,610 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	29,123,273 - 29,182,568 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	28,961,450 - 29,020,118 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	28,627,418 - 28,684,596 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	10	27,487,982 - 27,545,122 (+)	NCBI		Celera
Cytogenetic Map	10	q21	NCBI

CCNJL
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	160,249,083 - 160,339,570 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	160,249,083 - 160,345,396 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	159,676,090 - 159,766,577 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	159,611,249 - 159,672,151 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	5	155,711,187 - 155,772,085 (-)	NCBI		Celera
Cytogenetic Map	5	q33.3	NCBI
HuRef	5	154,772,618 - 154,833,455 (-)	NCBI		HuRef
CHM1_1	5	159,111,668 - 159,172,565 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	160,777,639 - 160,868,099 (-)	NCBI		T2T-CHM13v2.0

Ccnjl
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	43,419,576 - 43,477,826 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	43,419,611 - 43,477,824 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	43,528,749 - 43,586,999 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	43,528,784 - 43,586,997 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	43,342,286 - 43,400,499 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	43,372,176 - 43,429,737 (+)	NCBI		MGSCv36	mm8
Celera	11	48,151,200 - 48,209,105 (+)	NCBI		Celera
Cytogenetic Map	11	B1.1	NCBI
cM Map	11	25.78	NCBI

Ccnjl
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955408	14,119,668 - 14,166,418 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955408	14,119,901 - 14,165,545 (-)	NCBI	ChiLan1.0	ChiLan1.0

CCNJL
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	155,437,303 - 155,499,554 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	153,576,849 - 153,639,325 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	155,642,783 - 155,704,936 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	162,256,782 - 162,316,758 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	162,256,782 - 162,316,764 (-)	Ensembl	panpan1.1		panPan2

CCNJL
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	50,409,014 - 50,464,189 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	50,303,623 - 50,359,213 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	50,844,576 - 50,899,786 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	50,844,054 - 50,898,778 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	50,652,240 - 50,707,388 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	50,776,084 - 50,831,287 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	51,296,747 - 51,351,951 (+)	NCBI		UU_Cfam_GSD_1.0

Ccnjl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	104,815,904 - 104,868,049 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936515	3,265,244 - 3,317,370 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936515	3,265,250 - 3,317,395 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CCNJL
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	63,227,658 - 63,292,603 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	16	63,226,940 - 63,290,296 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	16	68,686,151 - 68,713,985 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CCNJL
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	62,611,876 - 62,673,912 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	62,611,452 - 62,672,617 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666034	14,931,730 - 14,993,399 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ccnjl
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624733	29,275,171 - 29,341,069 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624733	29,274,760 - 29,338,610 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Ccnjl
283 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	238
Count of miRNA genes:	153
Interacting mature miRNAs:	196
Transcripts:	ENSRNOT00000005171
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
6893352	Bw100	Body weight QTL 100	0.33	0.6	body mass (VT:0001259)	body weight (CMO:0000012)	1	15906665	60906665	Rat
9589136	Insul27	Insulin level QTL 27	10.46	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	10	11474010	56474010	Rat
631564	Apr3	Acute phase response QTL 3	3.9		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	10	15275955	60275955	Rat
1298069	Bp168	Blood pressure QTL 168	5.5		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	10	26521957	98003205	Rat
724556	Pur2	Proteinuria QTL 2	5.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	22427500	90627625	Rat
8662860	Vetf10	Vascular elastic tissue fragility QTL 10			artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	10	6154182	73453136	Rat
2313066	Bss63	Bone structure and strength QTL 63	1.4	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	10	5387014	50387014	Rat
631554	Bp133	Blood pressure QTL 133		0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	743364	63851208	Rat
2313064	Bmd71	Bone mineral density QTL 71	0.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	10	5387014	50387014	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
70223	Bp57	Blood pressure QTL 57	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	1	80676123	Rat
1354587	Kidm21	Kidney mass QTL 21	3.3		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	10	15028513	60430477	Rat
6893350	Bw99	Body weight QTL 99	0.87	0.16	body mass (VT:0001259)	body weight (CMO:0000012)	1	15906665	60906665	Rat
1578761	Stresp21	Stress response QTL 21	3.3		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	6375746	51375746	Rat
70224	Eae3	Experimental allergic encephalomyelitis QTL 3	4.1		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	10	26521957	61345413	Rat
2293680	Bss40	Bone structure and strength QTL 40	5.66	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	10	1	35225947	Rat
7387235	Uae41	Urinary albumin excretion QTL 41	5.26	0.1874	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	10	1	29497586	Rat
2298544	Neuinf9	Neuroinflammation QTL 9	4.6		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	10	5801990	62146030	Rat
2298480	Eau7	Experimental allergic uveoretinitis QTL 7		0.0049	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	10	27957626	34490668	Rat
10401803	Kidm50	Kidney mass QTL 50			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	10	418344	45418344	Rat
2313081	Bss64	Bone structure and strength QTL 64	1.3	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	10	5387014	50387014	Rat
1554317	Bmd4	Bone mineral density QTL 4	9.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	19816042	99406971	Rat
1598852	Anxrr19	Anxiety related response QTL 19	5.07		body movement coordination trait (VT:0005424)	number of rearing movements in an experimental apparatus (CMO:0001752)	10	18167841	63167841	Rat
2313087	Bmd80	Bone mineral density QTL 80	3.2	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	10	19606483	64606483	Rat
634327	Hc4	Hypercalciuria QTL 4	2.4		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	10	1	38328221	Rat
1581497	Esta1	Estrogen-induced thymic atrophy QTL 1			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	21329805	61345413	Rat
631531	Iresp2	Immunoglobin response QTL2	6.3		blood immunoglobulin E amount (VT:0002492)	serum immunoglobulin E level (CMO:0002101)	10	22918268	36400810	Rat
2313095	Bss62	Bone structure and strength QTL 62	1.5	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	5387014	50387014	Rat
631532	Cm50	Cardiac mass QTL 50	6.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	10	17907113	51786432	Rat
2300171	Bmd58	Bone mineral density QTL 58	4.9	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	26944628	71944628	Rat
7411611	Foco17	Food consumption QTL 17	18.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	10	1	42315980	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
2301967	Cm73	Cardiac mass QTL 73	4.55		heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	14487011	89062041	Rat
2303118	Mamtr7	Mammary tumor resistance QTL 7		0.003	mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	10	9658275	104670812	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14487011	104060283	Rat
9590268	Scort13	Serum corticosterone level QTL 13	3.26	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	11474010	56474010	Rat
2313104	Bss61	Bone structure and strength QTL 61	0.9	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	10	5387014	50387014	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6357896	96121100	Rat
9590310	Scort19	Serum corticosterone level QTL 19	6.3	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	11474010	56474010	Rat
10402859	Bp381	Blood pressure QTL 381		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	27606468	72606468	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14487011	107057807	Rat
2292441	Bp308	Blood pressure QTL 308			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	27606468	72606468	Rat
2313055	Bw96	Body weight QTL 96	3.6	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	10	19606483	64606483	Rat
631542	Bp82	Blood pressure QTL 82	6.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	26521957	98952741	Rat

Markers in Region

RH134927

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	28,053,264 - 28,053,420 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	29,181,285 - 29,181,440	NCBI	Rnor6.0
Rnor_5.0	10	29,019,950 - 29,020,105	UniSTS	Rnor5.0
RGSC_v3.4	10	28,684,435 - 28,684,590	UniSTS	RGSC3.4
Celera	10	27,544,961 - 27,545,116	UniSTS
RH 3.4 Map	10	296.6	UniSTS
Cytogenetic Map	10	q21	UniSTS

AU047545

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	28,005,810 - 28,005,953 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	29,132,832 - 29,132,974	NCBI	Rnor6.0
Rnor_5.0	10	28,971,497 - 28,971,639	UniSTS	Rnor5.0
RGSC_v3.4	10	28,636,928 - 28,637,070	UniSTS	RGSC3.4
Celera	10	27,497,491 - 27,497,633	UniSTS
Cytogenetic Map	10	q21	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001037773	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006246133	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063268964	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC099113	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BF407140	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BI289615	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000005171 ⟹ ENSRNOP00000005171

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	27,995,679 - 28,053,426 (+)	Ensembl
Rnor_6.0 Ensembl	10	29,123,273 - 29,182,568 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000078415 ⟹ ENSRNOP00000069867

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	28,037,557 - 28,053,420 (+)	Ensembl
Rnor_6.0 Ensembl	10	29,165,577 - 29,181,440 (+)	Ensembl

RefSeq Acc Id:

NM_001037773 ⟹ NP_001032862

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	28,497,757 - 28,554,877 (+)	NCBI
mRatBN7.2	10	27,996,301 - 28,053,426 (+)	NCBI
Rnor_6.0	10	29,123,322 - 29,181,446 (+)	NCBI
Rnor_5.0	10	28,961,450 - 29,020,118 (+)	NCBI
RGSC_v3.4	10	28,627,418 - 28,684,596 (+)	RGD
Celera	10	27,487,982 - 27,545,122 (+)	RGD

Sequence:

show sequence

ATGGATGAGCCGTGGTGGGAAGGGCGGGTCGCCTCGGACGTCCACTGCACTCTGCGCGAGAAGG
AACTGAAGCTGCCCACCTTCCGTGCCCACTCCCCGCTCCTGAAGAGCCGGCGGTTCTTTGTAGA
CATTCTGACCCTGCTAAGCAGACACTGCCATCTCTGCCCCTCGGCCCGGCACCTGGCCATCTAC
CTTTTGGACCACTTTATGGACCAGTACAACGTCACCACCTCCAAGCAGCTGTACACTGTGGCTG
TCTCCTGCCTCCTGCTGGCAAGTAAGTTTGAGGACAGAGAAGACCGTGTGCCCAAATTGGATCA
GATAAACAGTACAAGGATCCTGAGCAGCCATAACTTCTCCCTCACCAAGAAGGAGCTGCTCACC
ACAGAACTTCTGCTCCTGGAGGCTTTCAGCTGGGACCTTTGCCTGCCCACGCCCGCCCACTTTC
TGGACTACTACCTCTTGGCCTCCATCAGCCAGAAGGACCACCACTGCCACACATGGCCCACCAC
CTGCCTCCGAAAGACCAAAGAGTGCCTCAAGGAGTACGCCCACTACTTCCTGGAAGTTACCCTA
CAAGATCATATATTTTACAAATTCCAGCCTTCTGTGGTCGCTGCAGCCTGTGTTGGGGCCTCCA
GGATCTGCCTTCAGCTTTCTCCATACTGGACGAGAGACTTGCAGAGGGTCTCGAACTACTCCCT
GGAGCATCTCAGCACGTGCATCGAAATCCTGCTGGTAGCATATGACAATGTCCTCAAGGATGCC
GTTGCAGTCAAGAGCCAGGCACTGGCCATGGTGCCCAGCTCATCATCAGCTCCCACCCAAGTGC
TGTTCCAACCACCCACCTACCCTTCTCTCAGCCAGCCACCGCCAACAACACTAGCCCAGTTCCA
GAGTCCAGCGCAGGACTTGTGCTTGGCATATCGGGACTCGTTGCAGGCCCACCGCTCAGGGACC
CTGCTCTCAGGAGACACTGGTCCATCCCTCCACACGCCATACCCAACCCTTCAGCCCTTGGATA
TGTGTCCTGTGCCCGTTCCTGCATCCCTTAGCATGCAGATGGCCATAGCAGCTGAACCCAGGCA
CTGCCTTACTGCCACCTACGGAAGCAGCTACTTCAGCGGGAGCCATATGTTCCCCACAGGCTGT
TTTGACAGCTAGGCCACAATTGGACCATAGGGAGAATCCTGGAAGACCCGACCAAGGAAGTAAA
TACCTAAGAAGAGAACTAGTCCAGGTGAGGCAAAGAACCTAGTATCTTTCAATAGAGAGGGTCT
GTGCTTTTTTTTAAAAAAAAAAGAAACCAACAAAACAAAACATCCAGGGACATATCTCACCCAA
CAGGGTCTCTCTGGGAAACCTCTTTCATGTGTGCTTGGAGGACAAAGACATGGCTCTGTGACCA
TTCCCTTGAGCTGGGGGATCCAATGGAGCGTATCAGACTGGAATTTGAGGACTGCATACAGATC
AGTACTACATCTGGGCTTCTCAAAGACTACTTTTCACAGCTATGCCACTGAAAAAGAAGGGGCA
CCTGGCACGTTTGTCTATGTCCCTAGAAGATCCATCCTGAGTGTTCTTCACTCCCTAGCTCTGC
TCCATGGGCCCCATGGCCAGTGTTTATGCCGAGCACTGACCCCACGGGGCCCAGTGAGCAGCTA
TCTTGCCCTCTGTATTTGAACCCCCGATCTTTTCATTCTTCTAGATATTCCACATGCTGCTGCT
TCCTGGAACAATCTAGCTTTCTATCCTGCAAAAAATCATCTTGTTTACATACCGTGTCAGGGAT
TTTTGTGATACTTGAAAATTCCGTAGGAGCAAAAAGTTTTAATTGCCTCACTGTCTGTCCCACA
CGAGGCTGTATCTTTTATTAACCCAACTCGGGACCAACTGGTGGATAACAACAGCGAGGATGAG
GATGCCACCCCTCCCCGTCTGGAAGAGTCCACCCCTGGGATGCTAGTGTTCTCCTGTTGGACTT
GGATTACTGCCCCCTGGTGGGGGAATGTTGTTGAGAGGAAGACAAAGGTTTGAACTGGTCCTCA
CTTCCCTCCACCACATGCTCATAGTTCTTAAACCGATCCCAGCTTTGAGTTTGGCCGATAATTA
ATCATGCTGTGGACTGTTATAAAAGTGGGGGGACTAATGGGGTATGTGACACCAGCATGGATAG
GCAAGAGACTGCTGGAGCAAAAGCCCATGTCTGGGATCTGCAGTGCAAGGGCTCAGGAACACCG
TCACCGTGTGCAATATGTTATGATTGTGACTCACAGCCTGTGCTTAAGATGTTCTTGTGCTTGC
GGTCTTTTTTTTTTTTGTTGTTATTGCTGTTGTTGTTTTCTGGTCAGGGGATTTGTTGTTCACC
CATCAGAATTGGAAGGGAGGTGCAAAAGACCACAGAAACAAAAATTGTAATTTTGTTTCAGTTG
GTTTTTGTTTTCTTTTACTTTGCCAGGAGATTTTTTTTTTTTTTTGAGATGATCAGATGTAGCT
AAGGCTACCCTCAAACTTAGTGCATAGCCAAAGCTGGCCTTGAACTCCTGATCCTCCTGCTTTA
GCCTCCCATGTTTGCCACCACACCTAGTCTCCCGGCTTTGACACATTTTCTGATCCAAGAGACC
CTAGCAGGGACTGCCGGGAAGGTGGCCACATGCTACTGAGTCGGATTTAACAGTGACAGGGCTT
TTCTAAGCAGATGAATGTCTCATGGAAACAGAACAAGGAAAGAGCTGGAGGCTGTCATTTTCTC
TATTAGCATAGGAACCTGCACATTCGTTTGTTATTTGTATGTGTGTGTGTGTATGTTTTGGCTC
CTCCCCCTCCACCTCCTCCACCAGCCTCTGTATTTATATGCAACTGATTTGGAGTCTGTTATAT
CTGTCTATTCTGGGCTGGGGCTTTTGAGAGAAGTATCTCCACGGGAGCCCCAGAACTAGCCTGA
TTCTCAGGATCAGATGTCCTTCAATAAACACATCACCTGCTCTTGG

hide sequence

RefSeq Acc Id:

XM_006246133 ⟹ XP_006246195

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	28,497,147 - 28,554,872 (+)	NCBI
mRatBN7.2	10	27,995,682 - 28,053,428 (+)	NCBI
Rnor_6.0	10	29,122,713 - 29,181,610 (+)	NCBI
Rnor_5.0	10	28,961,450 - 29,020,118 (+)	NCBI

Sequence:

show sequence

TGCGAGCCGCGGCGGGACCGAGCGCAGGCAGGGGCGCGCCGGTGGCCGGGCGGGACGGGCTGCG
GAGGCGGCGGTCGCGAGCACGCGAGGCCAGGGGCCGGGCGGCCACCGGAGGGCACTACGTTCCC
GGTGCGGGAAGGGACCCGCCACCCGCGGACCCCCACTCGGGGACAGCGATGCGGTGCGCCCCAA
GATCCCGATAGCCTTATATCTGCGGCGGTGATGGATGAGCCGTGGTGGGAAGGGCGGGTCGCCT
CGGACGTCCACTGCACTCTGCGCGAGAAGGAACTGAAGCTGCCCACCTTCCGTGCCCACTCCCC
GCTCCTGAAGAGCCGGCGGTTCTTTGTAGACATTCTGACCCTGCTAAGCAGACACTGCCATCTC
TGCCCCTCGGCCCGGCACCTGGCCATCTACCTTTTGGACCACTTTATGGACCAGTACAACGTCA
CCACCTCCAAGCAGCTGTACACTGTGGCTGTCTCCTGCCTCCTGCTGGCAAGTAAGTTTGAGGA
CAGAGAAGACCGTGTGCCCAAATTGGATCAGATAAACAGTACAAGGATCCTGAGCAGCCATAAC
TTCTCCCTCACCAAGAAGGAGCTGCTCACCACAGAACTTCTGCTCCTGGAGGCTTTCAGCTGGG
ACCTTTGCCTGCCCACGCCCGCCCACTTTCTGGACTACTACCTCTTGGCCTCCATCAGCCAGAA
GGACCACCACTGCCACACATGGCCCACCACCTGCCTCCGAAAGACCAAAGAGTGCCTCAAGGAG
TACGCCCACTACTTCCTGGAAGTTACCCTACAAGATCATATATTTTACAAATTCCAGCCTTCTG
TGGTCGCTGCAGCCTGTGTTGGGGCCTCCAGGATCTGCCTTCAGCTTTCTCCATACTGGACGAG
AGACTTGCAGAGGGTCTCGAACTACTCCCTGGAGCATCTCAGCACGTGCATCGAAATCCTGCTG
GTAGCATATGACAATGTCCTCAAGGATGCCGTTGCAGTCAAGAGCCAGGCACTGGCCATGGTGC
CCAGCTCATCATCAGCTCCCACCCAAGTGCTGTTCCAACCACCCACCTACCCTTCTCTCAGCCA
GCCACCGCCAACAACACTAGCCCAGTTCCAGAGTCCAGCGCAGGACTTGTGCTTGGCATATCGG
GACTCGTTGCAGGCCCACCGCTCAGGGACCCTGCTCTCAGGAGACACTGGTCCATCCCTCCACA
CGCCATACCCAACCCTTCAGCCCTTGGATATGTGTCCTGTGCCCGTTCCTGCATCCCTTAGCAT
GCAGATGGCCATAGCAGCTGAACCCAGGCACTGCCTTACTGCCACCTACGGAAGCAGCTACTTC
AGCGGGAGCCATATGTTCCCCACAGGCTGTTTTGACAGCTAGGCCACAATTGGACCATAGGGAG
AATCCTGGAAGACCCGACCAAGGAAGTAAATACCTAAGAAGAGAACTAGTCCAGGTGAGGCAAA
GAACCTAGTATCTTTCAATAGAGAGGGTCTGTGCTTTTTTTTAAAAAAAAAAGAAACCAACAAA
ACAAAACATCCAGGGACATATCTCACCCAACAGGGTCTCTCTGGGAAACCTCTTTCATGTGTGC
TTGGAGGACAAAGACATGGCTCTGTGACCATTCCCTTGAGCTGGGGGATCCAATGGAGCGTATC
AGACTGGAATTTGAGGACTGCATACAGATCAGTACTACATCTGGGCTTCTCAAAGACTACTTTT
CACAGCTATGCCACTGAAAAAGAAGGGGCACCTGGCACGTTTGTCTATGTCCCTAGAAGATCCA
TCCTGAGTGTTCTTCACTCCCTAGCTCTGCTCCATGGGCCCCATGGCCAGTGTTTATGCCGAGC
ACTGACCCCACGGGGCCCAGTGAGCAGCTATCTTGCCCTCTGTATTTGAACCCCCGATCTTTTC
ATTCTTCTAGATATTCCACATGCTGCTGCTTCCTGGAACAATCTAGCTTTCTATCCTGCAAAAA
ATCATCTTGTTTACATACCGTGTCAGGGATTTTTGTGATACTTGAAAATTCCGTAGGAGCAAAA
AGTTTTAATTGCCTCACTGTCTGTCCCACACGAGGCTGTATCTTTTATTAACCCAACTCGGGAC
CAACTGGTGGATAACAACAGCGAGGATGAGGATGCCACCCCTCCCCGTCTGGAAGAGTCCACCC
CTGGGATGCTAGTGTTCTCCTGTTGGACTTGGATTACTGCCCCCTGGTGGGGGAATGTTGTTGA
GAGGAAGACAAAGGTTTGAACTGGTCCTCACTTCCCTCCACCACATGCTCATAGTTCTTAAACC
GATCCCAGCTTTGAGTTTGGCCGATAATTAATCATGCTGTGGACTGTTATAAAAGTGGGGGGAC
TAATGGGGTATGTGACACCAGCATGGATAGGCAAGAGACTGCTGGAGCAAAAGCCCATGTCTGG
GATCTGCAGTGCAAGGGCTCAGGAACACCGTCACCGTGTGCAATATGTTATGATTGTGACTCAC
AGCCTGTGCTTAAGATGTTCTTGTGCTTGCGGTCTTTTTTTTTTTTGTTGTTATTGCTGTTGTT
GTTTTCTGGTCAGGGGATTTGTTGTTCACCCATCAGAATTGGAAGGGAGGTGCAAAAGACCACA
GAAACAAAAATTGTAATTTTGTTTCAGTTGGTTTTTGTTTTCTTTTACTTTGCCAGGAGATTTT
TTTTTTTTTTTGAGATGATCAGATGTAGCTAAGGCTACCCTCAAACTTAGTGCATAGCCAAAGC
TGGCCTTGAACTCCTGATCCTCCTGCTTTAGCCTCCCATGTTTGCCACCACACCTAGTCTCCCG
GCTTTGACACATTTTCTGATCCAAGAGACCCTAGCAGGGACTGCCGGGAAGGTGGCCACATGCT
ACTGAGTCGGATTTAACAGTGACAGGGCTTTTCTAAGCAGATGAATGTCTCATGGAAACAGAAC
AAGGAAAGAGCTGGAGGCTGTCATTTTCTCTATTAGCATAGGAACCTGCACATTCGTTTGTTAT
TTGTATGTGTGTGTGTGTATGTTTTGGCTCCTCCCCCTCCACCTCCTCCACCAGCCTCTGTATT
TATATGCAACTGATTTGGAGTCTGTTATATCTGTCTATTCTGGGCTGGGGCTTTTGAGAGAAGT
ATCTCCACGGGAGCCCCAGAACTAGCCTGATTCTCAGGATCAGATGTCCTTCAATAAACACATC
ACCTGCTCTTGGTCTCCGCTGCCTTTGTCTGGACATGTCTTAGCAGGTCAACCCTCCCCCACCT
CTCTACTCAACCTCAGTGAGAGTCTCCTTTGGGTGAGAGGTAAGAGAGATCAAGAGGTTTGTGA
GCTTTCTCATGTCTGTGACAAAATGACCCAATAAAGCAACCTACAGGA

hide sequence

RefSeq Acc Id:

XM_063268964 ⟹ XP_063125034

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	28,497,144 - 28,554,872 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001032862	(Get FASTA)	NCBI Sequence Viewer
	XP_006246195	(Get FASTA)	NCBI Sequence Viewer
	XP_063125034	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH99113	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000005171.4
	ENSRNOP00000069867.1

RefSeq Acc Id:

NP_001032862 ⟸ NM_001037773

- UniProtKB:

F1LPN6 (UniProtKB/TrEMBL), A6HDN1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDEPWWEGRVASDVHCTLREKELKLPTFRAHSPLLKSRRFFVDILTLLSRHCHLCPSARHLAIY
LLDHFMDQYNVTTSKQLYTVAVSCLLLASKFEDREDRVPKLDQINSTRILSSHNFSLTKKELLT
TELLLLEAFSWDLCLPTPAHFLDYYLLASISQKDHHCHTWPTTCLRKTKECLKEYAHYFLEVTL
QDHIFYKFQPSVVAAACVGASRICLQLSPYWTRDLQRVSNYSLEHLSTCIEILLVAYDNVLKDA
VAVKSQALAMVPSSSSAPTQVLFQPPTYPSLSQPPPTTLAQFQSPAQDLCLAYRDSLQAHRSGT
LLSGDTGPSLHTPYPTLQPLDMCPVPVPASLSMQMAIAAEPRHCLTATYGSSYFSGSHMFPTGC
FDS

hide sequence

RefSeq Acc Id:	XP_006246195 ⟸ XM_006246133
- Peptide Label:	isoform X1
- UniProtKB:	F1LPN6 (UniProtKB/TrEMBL), A6HDN1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDEPWWEGRVASDVHCTLREKELKLPTFRAHSPLLKSRRFFVDILTLLSRHCHLCPSARHLAIY LLDHFMDQYNVTTSKQLYTVAVSCLLLASKFEDREDRVPKLDQINSTRILSSHNFSLTKKELLT TELLLLEAFSWDLCLPTPAHFLDYYLLASISQKDHHCHTWPTTCLRKTKECLKEYAHYFLEVTL QDHIFYKFQPSVVAAACVGASRICLQLSPYWTRDLQRVSNYSLEHLSTCIEILLVAYDNVLKDA VAVKSQALAMVPSSSSAPTQVLFQPPTYPSLSQPPPTTLAQFQSPAQDLCLAYRDSLQAHRSGT LLSGDTGPSLHTPYPTLQPLDMCPVPVPASLSMQMAIAAEPRHCLTATYGSSYFSGSHMFPTGC FDS hide sequence

Ensembl Acc Id:

ENSRNOP00000005171 ⟸ ENSRNOT00000005171

Ensembl Acc Id:

ENSRNOP00000069867 ⟸ ENSRNOT00000078415

RefSeq Acc Id:	XP_063125034 ⟸ XM_063268964
- Peptide Label:	isoform X2

Protein Domains

Cyclin C-terminal Cyclin-like

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1LPN6-F1-model_v2	AlphaFold	F1LPN6	1-387	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1561384	AgrOrtholog
BioCyc Gene	G2FUF-25446	BioCyc
Ensembl Genes	ENSRNOG00000003893	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000005171.7	UniProtKB/TrEMBL
	ENSRNOT00000078415.2	UniProtKB/TrEMBL
Gene3D-CATH	Cyclin-like	UniProtKB/TrEMBL
InterPro	Cyclin	UniProtKB/TrEMBL
	Cyclin-like	UniProtKB/TrEMBL
	Cyclin-like_sf	UniProtKB/TrEMBL
	Cyclin_C	UniProtKB/TrEMBL
	Cyclin_N	UniProtKB/TrEMBL
KEGG Report	rno:303059	UniProtKB/TrEMBL
NCBI Gene	303059	ENTREZGENE
PANTHER	CYCLIN-J-LIKE PROTEIN	UniProtKB/TrEMBL
	PTHR10177	UniProtKB/TrEMBL
Pfam	Cyclin_C	UniProtKB/TrEMBL
	Cyclin_N	UniProtKB/TrEMBL
PhenoGen	Ccnjl	PhenoGen
RatGTEx	ENSRNOG00000003893	RatGTEx
SMART	CYCLIN	UniProtKB/TrEMBL
	Cyclin_C	UniProtKB/TrEMBL
Superfamily-SCOP	Cyclin_like	UniProtKB/TrEMBL
UniProt	A6HDN1	ENTREZGENE, UniProtKB/TrEMBL
	F1LPN6	ENTREZGENE, UniProtKB/TrEMBL
	Q4KLM3_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-09-15	Ccnjl	cyclin J-like	LOC303059	similar to novel protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-02-09	LOC303059	similar to novel protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar