Il9r (interleukin 9 receptor) - Rat Genome Database

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Gene: Il9r (interleukin 9 receptor) Rattus norvegicus
Analyze
Symbol: Il9r
Name: interleukin 9 receptor
RGD ID: 2907
Description: Enables interleukin-9 binding activity and interleukin-9 receptor activity. Involved in positive regulation of cell growth. Predicted to be located in cell surface. Predicted to be active in external side of plasma membrane. Orthologous to human IL9R (interleukin 9 receptor); PARTICIPATES IN cytokine mediated signaling pathway; Jak-Stat signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; ammonium chloride; amphetamine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: interleukin-9 receptor
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Candidate Gene For: Eau7
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81015,936,156 - 15,947,613 (+)NCBIGRCr8
mRatBN7.21015,431,706 - 15,444,144 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1015,431,706 - 15,441,990 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1020,177,738 - 20,189,747 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01019,666,631 - 19,678,640 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01015,159,450 - 15,171,460 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01015,697,216 - 15,708,684 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1015,696,824 - 15,710,423 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01015,592,041 - 15,642,799 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41015,678,793 - 15,690,250 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11015,679,841 - 15,691,299 (+)NCBI
Celera1015,099,236 - 15,110,693 (+)NCBICelera
Cytogenetic Map10q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Replacement of interleukin-2 (IL-2)-generated mitogenic signals by a mink cell focus-forming (MCF) or xenotropic virus-induced IL-9-dependent autocrine loop: implications for MCF virus-induced leukemogenesis. Flubacher MM, etal., J Virol 1994 Dec;68(12):7709-16.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Increased expression of interleukin-9, interleukin-9 receptor, and the calcium-activated chloride channel hCLCA1 in the upper airways of patients with cystic fibrosis. Hauber HP, etal., Laryngoscope. 2003 Jun;113(6):1037-42.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Comprehensive gene review and curation RGD comprehensive gene curation
10. IL-9 and its receptor in allergic and nonallergic lung disease: increased expression in asthma. Shimbara A, etal., J Allergy Clin Immunol. 2000 Jan;105(1 Pt 1):108-15.
Additional References at PubMed
PMID:24270810  


Genomics

Comparative Map Data
Il9r
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81015,936,156 - 15,947,613 (+)NCBIGRCr8
mRatBN7.21015,431,706 - 15,444,144 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1015,431,706 - 15,441,990 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1020,177,738 - 20,189,747 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01019,666,631 - 19,678,640 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01015,159,450 - 15,171,460 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01015,697,216 - 15,708,684 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1015,696,824 - 15,710,423 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01015,592,041 - 15,642,799 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41015,678,793 - 15,690,250 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11015,679,841 - 15,691,299 (+)NCBI
Celera1015,099,236 - 15,110,693 (+)NCBICelera
Cytogenetic Map10q12NCBI
IL9R
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38Y57,184,072 - 57,197,869 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38X155,997,696 - 156,013,020 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX155,997,696 - 156,013,017 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p14 EnsemblY57,184,216 - 57,199,537 (+)EnsemblGRCh38hg38GRCh38
GRCh37Y59,330,367 - 59,343,488 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh37X155,227,361 - 155,240,482 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X154,880,440 - 154,893,676 (+)NCBINCBI36Build 36hg18NCBI36
Build 36Y57,739,640 - 57,752,876 (+)NCBINCBI36Build 36hg18NCBI36
Build 34Y57,668,376 - 57,681,613NCBI
CeleraX155,383,904 - 155,397,137 (+)NCBICelera
Cytogenetic MapXq28 and Yq12NCBI
HuRefX143,710,176 - 143,723,407 (+)NCBIHuRef
CHM1_1X155,138,863 - 155,152,089 (+)NCBICHM1_1
T2T-CHM13v2.0Y62,422,543 - 62,435,805 (+)NCBIT2T-CHM13v2.0
T2T-CHM13v2.0X154,225,556 - 154,239,352 (+)NCBIT2T-CHM13v2.0
Il9r
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391132,137,544 - 32,155,283 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1132,137,541 - 32,150,279 (-)EnsemblGRCm39 Ensembl
GRCm381132,187,544 - 32,205,283 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1132,187,541 - 32,200,279 (-)EnsemblGRCm38mm10GRCm38
MGSCv371132,088,997 - 32,100,279 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361132,088,997 - 32,100,222 (-)NCBIMGSCv36mm8
Celera1134,604,567 - 34,617,169 (-)NCBICelera
Cytogenetic Map11A4NCBI
cM Map1118.82NCBI
Il9r
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544217,117,429 - 17,127,451 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544217,115,207 - 17,128,899 (+)NCBIChiLan1.0ChiLan1.0
LOC100991889
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2111,195,615 - 1,206,056 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan191,197,948 - 1,208,389 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09109,268,011 - 109,277,418 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X155,373,324 - 155,386,631 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX155,373,324 - 155,386,631 (+)Ensemblpanpan1.1panPan2
LOC611642
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1640,425,072 - 40,437,917 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
ROS_Cfam_1.0640,768,164 - 40,780,987 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1640,455,718 - 40,468,536 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0640,416,646 - 40,429,464 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0640,895,831 - 40,908,650 (+)NCBIUU_Cfam_GSD_1.0
Il9r
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344112,731,632 - 112,742,605 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936501829,236 - 840,048 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936501829,236 - 840,130 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IL9R
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl341,583,693 - 41,594,867 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1341,581,253 - 41,590,485 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2340,846,400 - 40,855,571 (-)NCBISscrofa10.2Sscrofa10.2susScr3
IL9R
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X130,006,399 - 130,019,191 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX130,006,899 - 130,020,894 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606568,115,543 - 68,123,772 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Il9r
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624913908,644 - 920,658 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624913906,953 - 918,906 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Il9r
100 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:270
Count of miRNA genes:191
Interacting mature miRNAs:210
Transcripts:ENSRNOT00000028008
Prediction methods:Microtar, Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9589136Insul27Insulin level QTL 2710.460.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)101147401056474010Rat
631564Apr3Acute phase response QTL 33.9blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)101527595560275955Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10538701450387014Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10538701450387014Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
1354587Kidm21Kidney mass QTL 213.3kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)101502851360430477Rat
634329Pia15Pristane induced arthritis QTL 153.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10124158324Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10637574651375746Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135225947Rat
7387235Uae41Urinary albumin excretion QTL 415.260.1874urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)10129497586Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)10580199062146030Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat
737820Alc9Alcohol consumption QTL 92.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10514402719233348Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10538701450387014Rat
631828Alc5Alcohol consumption QTL 52.4consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10514402717245662Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138328221Rat
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
631660Hcar1Hepatocarcinoma resistance QTL 13.40.0001liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)10615418215990232Rat
1576304Schws7Schwannoma susceptibility QTL 70.0115nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)10476552719816042Rat
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142315980Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101448701189062041Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
9590268Scort13Serum corticosterone level QTL 133.260.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
9590310Scort19Serum corticosterone level QTL 196.30.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000028008   ⟹   ENSRNOP00000028008
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1015,431,706 - 15,441,990 (+)Ensembl
Rnor_6.0 Ensembl1015,697,227 - 15,708,684 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000079290   ⟹   ENSRNOP00000070372
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1015,696,824 - 15,710,423 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000109551   ⟹   ENSRNOP00000092931
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1015,436,356 - 15,441,990 (+)Ensembl
RefSeq Acc Id: NM_017021   ⟹   NP_058717
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81015,936,156 - 15,947,613 (+)NCBI
mRatBN7.21015,431,706 - 15,443,163 (+)NCBI
Rnor_6.01015,697,227 - 15,708,684 (+)NCBI
Rnor_5.01015,592,041 - 15,642,799 (+)NCBI
RGSC_v3.41015,678,793 - 15,690,250 (+)RGD
Celera1015,099,236 - 15,110,693 (+)RGD
Sequence:
RefSeq Acc Id: NP_058717   ⟸   NM_017021
- UniProtKB: G3V8S1 (UniProtKB/TrEMBL),   A6HDB7 (UniProtKB/TrEMBL),   Q63216 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000070372   ⟸   ENSRNOT00000079290
Ensembl Acc Id: ENSRNOP00000028008   ⟸   ENSRNOT00000028008
Ensembl Acc Id: ENSRNOP00000092931   ⟸   ENSRNOT00000109551
Protein Domains
Fibronectin type-III

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JXR2-F1-model_v2 AlphaFold A0A0G2JXR2 1-501 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13697082
Promoter ID:EPDNEW_R7606
Type:single initiation site
Name:Il9r_1
Description:interleukin 9 receptor
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01015,697,176 - 15,697,236EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2907 AgrOrtholog
BioCyc Gene G2FUF-25695 BioCyc
Ensembl Genes ENSRNOG00000020630 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000028008 ENTREZGENE
  ENSRNOT00000028008.6 UniProtKB/TrEMBL
  ENSRNOT00000109551.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Fibronectin_type3 UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Hempt_rcpt_S_F1_CS UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
KEGG Report rno:24500 UniProtKB/TrEMBL
NCBI Gene 24500 ENTREZGENE
PANTHER CYTOKINE RECEPTOR UniProtKB/TrEMBL
  INTERLEUKIN-9 RECEPTOR UniProtKB/TrEMBL
PhenoGen Il9r PhenoGen
PROSITE FN3 UniProtKB/TrEMBL
  HEMATOPO_REC_S_F1 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000020630 RatGTEx
Superfamily-SCOP FN_III-like UniProtKB/TrEMBL
UniProt A0A8I6AHK3_RAT UniProtKB/TrEMBL
  A6HDB7 ENTREZGENE, UniProtKB/TrEMBL
  A6HDB8_RAT UniProtKB/TrEMBL
  G3V8S1 ENTREZGENE, UniProtKB/TrEMBL
  Q63216 ENTREZGENE, UniProtKB/TrEMBL
  Q8CH44_RAT UniProtKB/TrEMBL
  Q8CH45_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Il9r  Interleukin 9 receptor      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_regulation expression induced by murine retroviruses 633086