| 61441 | Btemp1 | Thermal response to stress QTL 1 | 4 | | body temperature trait (VT:0005535) | core body temperature (CMO:0001036) | 10 | 35392457 | 63642539 | Rat |
| 9589136 | Insul27 | Insulin level QTL 27 | 10.46 | 0.001 | blood insulin amount (VT:0001560) | plasma insulin level (CMO:0000342) | 10 | 11474010 | 56474010 | Rat |
| 152025229 | Scl83 | Serum cholesterol level QTL 83 | 4.33 | | blood cholesterol amount (VT:0000180) | | 10 | 35710580 | 68663659 | Rat |
| 1578779 | Tcas10 | Tongue tumor susceptibility QTL 10 | 3.12 | | tongue integrity trait (VT:0010553) | number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950) | 10 | 31297439 | 76297439 | Rat |
| 631564 | Apr3 | Acute phase response QTL 3 | 3.9 | | blood interleukin-6 amount (VT:0008595) | plasma interleukin-6 level (CMO:0001927) | 10 | 15275955 | 60275955 | Rat |
| 1298069 | Bp168 | Blood pressure QTL 168 | 5.5 | | blood pressure trait (VT:0000183) | systolic blood pressure (CMO:0000004) | 10 | 26521957 | 98003205 | Rat |
| 631554 | Bp133 | Blood pressure QTL 133 | | 0.005 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 10 | 743364 | 63851208 | Rat |
| 631557 | Bp136 | Blood pressure QTL 136 | | 0.003 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 10 | 30632053 | 75632053 | Rat |
| 61325 | Aia5 | Adjuvant induced arthritis QTL 5 | | 0.01 | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 23444813 | 104060283 | Rat |
| 1578761 | Stresp21 | Stress response QTL 21 | 3.3 | | thymus mass (VT:0004954) | thymus wet weight (CMO:0000855) | 10 | 6375746 | 51375746 | Rat |
| 2298544 | Neuinf9 | Neuroinflammation QTL 9 | 4.6 | | nervous system integrity trait (VT:0010566) | spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126) | 10 | 5801990 | 62146030 | Rat |
| 61332 | Eau3 | Experimental allergic uveoretinitis QTL 3 | | 0.004 | uvea integrity trait (VT:0010551) | experimental autoimmune uveitis score (CMO:0001504) | 10 | 34490559 | 45579777 | Rat |
| 10401803 | Kidm50 | Kidney mass QTL 50 | | | kidney mass (VT:0002707) | both kidneys wet weight (CMO:0000085) | 10 | 418344 | 45418344 | Rat |
| 1554317 | Bmd4 | Bone mineral density QTL 4 | 9.4 | 0.0001 | lumbar vertebra mineral mass (VT:0010511) | volumetric bone mineral density (CMO:0001553) | 10 | 19816042 | 99406971 | Rat |
| 1598852 | Anxrr19 | Anxiety related response QTL 19 | 5.07 | | body movement coordination trait (VT:0005424) | number of rearing movements in an experimental apparatus (CMO:0001752) | 10 | 18167841 | 63167841 | Rat |
| 1581497 | Esta1 | Estrogen-induced thymic atrophy QTL 1 | | | thymus mass (VT:0004954) | thymus wet weight (CMO:0000855) | 10 | 21329805 | 61345413 | Rat |
| 2313095 | Bss62 | Bone structure and strength QTL 62 | 1.5 | 0.0001 | tibia size trait (VT:0100001) | tibia midshaft cross-sectional area (CMO:0001717) | 10 | 5387014 | 50387014 | Rat |
| 724527 | Bp148 | Blood pressure QTL 148 | | 0.0001 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 10 | 28453136 | 73453136 | Rat |
| 1358897 | Stresp6 | Stress response QTL 6 | 4.17 | 0.022 | blood norepinephrine amount (VT:0005663) | plasma norepinephrine level (CMO:0001010) | 10 | 35392267 | 64155584 | Rat |
| 1331762 | Rf40 | Renal function QTL 40 | 3.873 | | kidney blood vessel physiology trait (VT:0100012) | absolute change in renal vascular resistance (CMO:0001900) | 10 | 29299504 | 64155584 | Rat |
| 2300171 | Bmd58 | Bone mineral density QTL 58 | 4.9 | 0.0001 | lumbar vertebra mineral mass (VT:0010511) | volumetric bone mineral density (CMO:0001553) | 10 | 26944628 | 71944628 | Rat |
| 61354 | Pia10 | Pristane induced arthritis QTL 10 | | 0.01 | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 23444813 | 104060283 | Rat |
| 2301967 | Cm73 | Cardiac mass QTL 73 | 4.55 | | heart left ventricle mass (VT:0007031) | heart left ventricle weight to body weight ratio (CMO:0000530) | 10 | 14487011 | 89062041 | Rat |
| 2303118 | Mamtr7 | Mammary tumor resistance QTL 7 | | 0.003 | mammary gland integrity trait (VT:0010552) | mammary tumor growth rate (CMO:0000344) | 10 | 9658275 | 104670812 | Rat |
| 2313104 | Bss61 | Bone structure and strength QTL 61 | 0.9 | 0.0001 | tibia area (VT:1000281) | tibia midshaft cross-sectional area (CMO:0001717) | 10 | 5387014 | 50387014 | Rat |
| 9590310 | Scort19 | Serum corticosterone level QTL 19 | 6.3 | 0.001 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 10 | 11474010 | 56474010 | Rat |
| 10402859 | Bp381 | Blood pressure QTL 381 | | 0.002 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 10 | 27606468 | 72606468 | Rat |
| 2316949 | Gluco60 | Glucose level QTL 60 | 3.7 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 10 | 14487011 | 107057807 | Rat |
| 6893352 | Bw100 | Body weight QTL 100 | 0.33 | 0.6 | body mass (VT:0001259) | body weight (CMO:0000012) | 1 | 15906665 | 60906665 | Rat |
| 724556 | Pur2 | Proteinuria QTL 2 | 5.5 | | urine protein amount (VT:0005160) | urine protein level (CMO:0000591) | 10 | 22427500 | 90627625 | Rat |
| 8662860 | Vetf10 | Vascular elastic tissue fragility QTL 10 | | | artery integrity trait (VT:0010639) | number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562) | 10 | 6154182 | 73453136 | Rat |
| 2313066 | Bss63 | Bone structure and strength QTL 63 | 1.4 | 0.0001 | tibia strength trait (VT:1000284) | bone polar moment of inertia (CMO:0001558) | 10 | 5387014 | 50387014 | Rat |
| 2313064 | Bmd71 | Bone mineral density QTL 71 | 0.9 | 0.0001 | tibia mineral mass (VT:1000283) | compact volumetric bone mineral density (CMO:0001730) | 10 | 5387014 | 50387014 | Rat |
| 70223 | Bp57 | Blood pressure QTL 57 | 5 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 10 | 1 | 80676123 | Rat |
| 1354587 | Kidm21 | Kidney mass QTL 21 | 3.3 | | kidney mass (VT:0002707) | right kidney wet weight (CMO:0000082) | 10 | 15028513 | 60430477 | Rat |
| 6893350 | Bw99 | Body weight QTL 99 | 0.87 | 0.16 | body mass (VT:0001259) | body weight (CMO:0000012) | 1 | 15906665 | 60906665 | Rat |
| 70224 | Eae3 | Experimental allergic encephalomyelitis QTL 3 | 4.1 | | nervous system integrity trait (VT:0010566) | experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046) | 10 | 26521957 | 61345413 | Rat |
| 2313081 | Bss64 | Bone structure and strength QTL 64 | 1.3 | 0.0001 | tibia strength trait (VT:1000284) | tibia total energy absorbed before break (CMO:0001736) | 10 | 5387014 | 50387014 | Rat |
| 1331791 | Cm31 | Cardiac mass QTL 31 | 3.84606 | | heart mass (VT:0007028) | heart wet weight (CMO:0000069) | 10 | 29299504 | 107211142 | Rat |
| 2313087 | Bmd80 | Bone mineral density QTL 80 | 3.2 | 0.0001 | tibia mineral mass (VT:1000283) | total volumetric bone mineral density (CMO:0001728) | 10 | 19606483 | 64606483 | Rat |
| 634327 | Hc4 | Hypercalciuria QTL 4 | 2.4 | | urine calcium amount (VT:0002985) | urine calcium excretion rate (CMO:0000763) | 10 | 1 | 38328221 | Rat |
| 1354614 | Hpcl1 | Hepatic cholesterol level QTL 1 | 3.3 | | liver cholesterol amount (VT:0010498) | liver cholesterol level (CMO:0001597) | 10 | 35392267 | 51793994 | Rat |
| 631532 | Cm50 | Cardiac mass QTL 50 | 6.6 | | heart mass (VT:0007028) | calculated heart weight (CMO:0000073) | 10 | 17907113 | 51786432 | Rat |
| 1576319 | Cia29 | Collagen induced arthritis QTL 29 | | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 33973921 | 78973921 | Rat |
| 7411611 | Foco17 | Food consumption QTL 17 | 18.7 | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 10 | 1 | 42315980 | Rat |
| 631267 | Cia20 | Collagen induced arthritis QTL 20 | 3.2 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 23444813 | 104060283 | Rat |
| 1600371 | Mcs21 | Mammary carcinoma susceptibility QTL 21 | 3 | | mammary gland integrity trait (VT:0010552) | mammary tumor growth rate (CMO:0000344) | 10 | 28875650 | 52200160 | Rat |
| 631268 | Cia21 | Collagen induced arthritis QTL 21 | 3.1 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 14487011 | 104060283 | Rat |
| 9590268 | Scort13 | Serum corticosterone level QTL 13 | 3.26 | 0.001 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 10 | 11474010 | 56474010 | Rat |
| 1576311 | Pia26 | Pristane induced arthritis QTL 26 | | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 31224026 | 75632053 | Rat |
| 61427 | Cia16 | Collagen induced arthritis QTL 16 | 3.2 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 6357896 | 96121100 | Rat |
| 2292441 | Bp308 | Blood pressure QTL 308 | | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 10 | 27606468 | 72606468 | Rat |
| 2313055 | Bw96 | Body weight QTL 96 | 3.6 | 0.0001 | body mass (VT:0001259) | body weight (CMO:0000012) | 10 | 19606483 | 64606483 | Rat |
| 631542 | Bp82 | Blood pressure QTL 82 | 6.8 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 10 | 26521957 | 98952741 | Rat |
