Dnaja3 (DnaJ heat shock protein family (Hsp40) member A3) - Rat Genome Database

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Gene: Dnaja3 (DnaJ heat shock protein family (Hsp40) member A3) Rattus norvegicus
Analyze
Symbol: Dnaja3
Name: DnaJ heat shock protein family (Hsp40) member A3
RGD ID: 1306527
Description: Enables Hsp70 protein binding activity. Predicted to be involved in several processes, including negative regulation of signal transduction; protein stabilization; and regulation of apoptotic process. Predicted to act upstream of or within several processes, including activation-induced cell death of T cells; mitochondrial DNA replication; and positive regulation of T cell proliferation. Predicted to be located in several cellular components, including actin filament; mitochondrial nucleoid; and postsynaptic membrane. Predicted to be active in mitochondrion. Orthologous to human DNAJA3 (DnaJ heat shock protein family (Hsp40) member A3); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine; acetamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: DnaJ (Hsp40) homolog, subfamily A, member 3; dnaJ homolog subfamily A member 3, mitochondrial; LOC360481; Tid-1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81011,361,168 - 11,386,599 (-)NCBIGRCr8
mRatBN7.21010,854,732 - 10,880,171 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1010,854,732 - 10,880,161 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1015,563,581 - 15,588,960 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01015,052,404 - 15,077,778 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01010,721,534 - 10,746,679 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01011,059,701 - 11,085,186 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1011,060,313 - 11,085,210 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0109,825,059 - 9,850,531 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41010,984,721 - 11,009,374 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11010,985,703 - 11,009,402 (-)NCBI
Celera109,817,864 - 9,842,384 (-)NCBICelera
Cytogenetic Map10q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-methylcholine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
acetamide  (EXP)
acrolein  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
amphetamine  (EXP)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
cadmium dichloride  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
clozapine  (ISO)
copper(II) sulfate  (ISO)
Cuprizon  (ISO)
cylindrospermopsin  (ISO)
Dibutyl phosphate  (ISO)
diclofenac  (ISO)
diquat  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
fenofibrate  (ISO)
fenthion  (ISO)
flutamide  (EXP,ISO)
furan  (EXP)
gold atom  (ISO)
gold(0)  (ISO)
hydralazine  (ISO)
isotretinoin  (ISO)
ivermectin  (ISO)
lamivudine  (ISO)
lead(0)  (ISO)
methidathion  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
nefazodone  (EXP)
nimesulide  (EXP)
ouabain  (ISO)
oxaliplatin  (EXP)
oxidopamine  (EXP,ISO)
ozone  (ISO)
paracetamol  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phlorizin  (ISO)
pirinixic acid  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
selenium atom  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
thapsigargin  (ISO)
thiram  (ISO)
topotecan  (EXP)
triphenyl phosphate  (ISO)
triptonide  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)
zidovudine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Identification of rTid-1, the rat homologue of the drosophila tumor suppressor l(2)tid gene. Fujita M, etal., Mol Cell Biochem. 2004 Mar;258(1-2):183-9.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10411904   PMID:11116152   PMID:11679576   PMID:11719219   PMID:11927590   PMID:14993262   PMID:15520177   PMID:15572682   PMID:15601829   PMID:15879105   PMID:16327803   PMID:16531398  
PMID:17588722   PMID:18614015   PMID:19038220   PMID:20053669   PMID:21106534   PMID:21231916   PMID:22016808   PMID:28755400   PMID:31081962  


Genomics

Comparative Map Data
Dnaja3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81011,361,168 - 11,386,599 (-)NCBIGRCr8
mRatBN7.21010,854,732 - 10,880,171 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1010,854,732 - 10,880,161 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1015,563,581 - 15,588,960 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01015,052,404 - 15,077,778 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01010,721,534 - 10,746,679 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01011,059,701 - 11,085,186 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1011,060,313 - 11,085,210 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0109,825,059 - 9,850,531 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41010,984,721 - 11,009,374 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11010,985,703 - 11,009,402 (-)NCBI
Celera109,817,864 - 9,842,384 (-)NCBICelera
Cytogenetic Map10q12NCBI
DNAJA3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38164,425,868 - 4,456,775 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl164,425,805 - 4,456,775 (+)EnsemblGRCh38hg38GRCh38
GRCh37164,475,869 - 4,506,776 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36164,415,883 - 4,446,777 (+)NCBINCBI36Build 36hg18NCBI36
Build 34164,415,882 - 4,446,774NCBI
Celera164,684,763 - 4,715,682 (+)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef164,443,030 - 4,474,077 (+)NCBIHuRef
CHM1_1164,475,548 - 4,506,722 (+)NCBICHM1_1
T2T-CHM13v2.0164,455,068 - 4,485,978 (+)NCBIT2T-CHM13v2.0
Dnaja3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39164,501,934 - 4,525,559 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl164,457,853 - 4,525,559 (+)EnsemblGRCm39 Ensembl
GRCm38164,684,070 - 4,707,695 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl164,639,989 - 4,707,695 (+)EnsemblGRCm38mm10GRCm38
MGSCv37164,684,070 - 4,707,695 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36164,599,351 - 4,622,919 (+)NCBIMGSCv36mm8
Celera165,314,744 - 5,338,370 (+)NCBICelera
Cytogenetic Map16A1NCBI
cM Map162.46NCBI
Dnaja3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544212,967,438 - 13,010,943 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544212,971,031 - 13,002,605 (-)NCBIChiLan1.0ChiLan1.0
DNAJA3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2184,956,514 - 4,986,628 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1168,746,188 - 8,776,316 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0163,351,825 - 3,381,914 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1164,519,965 - 4,550,786 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl164,519,965 - 4,550,786 (+)Ensemblpanpan1.1panPan2
DNAJA3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1636,921,941 - 36,967,718 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl636,917,858 - 36,967,689 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha638,249,594 - 38,296,021 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0637,125,733 - 37,171,931 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl637,123,075 - 37,171,919 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1636,919,804 - 36,966,222 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0636,812,985 - 36,859,394 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0637,214,235 - 37,260,679 (-)NCBIUU_Cfam_GSD_1.0
Dnaja3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344106,634,555 - 106,665,565 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493669444,635 - 74,958 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493669443,898 - 74,939 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DNAJA3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl337,883,244 - 37,919,324 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1337,883,233 - 37,919,141 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2338,938,175 - 38,974,053 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DNAJA3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.154,109,612 - 4,139,789 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606826,530,263 - 26,581,063 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dnaja3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248242,214,240 - 2,259,696 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248242,215,337 - 2,259,696 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Dnaja3
158 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:78
Count of miRNA genes:66
Interacting mature miRNAs:68
Transcripts:ENSRNOT00000005479
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634329Pia15Pristane induced arthritis QTL 153.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10124158324Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135225947Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138328221Rat
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142315980Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
1576304Schws7Schwannoma susceptibility QTL 70.0115nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)10476552719816042Rat
631828Alc5Alcohol consumption QTL 52.4consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10514402717245662Rat
737820Alc9Alcohol consumption QTL 92.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10514402719233348Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10538701450387014Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10538701450387014Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10538701450387014Rat
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)10580199062146030Rat
631660Hcar1Hepatocarcinoma resistance QTL 13.40.0001liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)10615418215990232Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10637574651375746Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat

Markers in Region
RH142870  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21010,855,646 - 10,855,802 (+)MAPPERmRatBN7.2
Rnor_6.01011,060,615 - 11,060,770NCBIRnor6.0
Rnor_5.0109,825,973 - 9,826,128UniSTSRnor5.0
RGSC_v3.41010,984,840 - 10,984,995UniSTSRGSC3.4
Celera109,817,983 - 9,818,138UniSTS
Cytogenetic Map10q12UniSTS
RH139067  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21010,855,528 - 10,855,661 (+)MAPPERmRatBN7.2
Rnor_6.01011,060,497 - 11,060,629NCBIRnor6.0
Rnor_5.0109,825,855 - 9,825,987UniSTSRnor5.0
RGSC_v3.41010,984,722 - 10,984,854UniSTSRGSC3.4
Celera109,817,865 - 9,817,997UniSTS
Cytogenetic Map10q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000005479   ⟹   ENSRNOP00000005479
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1010,854,739 - 10,880,155 (-)Ensembl
Rnor_6.0 Ensembl1011,061,492 - 11,085,142 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000081596   ⟹   ENSRNOP00000073217
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1010,854,732 - 10,880,161 (-)Ensembl
Rnor_6.0 Ensembl1011,060,499 - 11,085,142 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000085230   ⟹   ENSRNOP00000073394
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1010,854,739 - 10,880,155 (-)Ensembl
Rnor_6.0 Ensembl1011,060,313 - 11,085,210 (-)Ensembl
RefSeq Acc Id: NM_001038595   ⟹   NP_001033684
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81011,361,168 - 11,386,599 (-)NCBI
mRatBN7.21010,854,732 - 10,880,171 (-)NCBI
Rnor_6.01011,061,492 - 11,085,142 (-)NCBI
Rnor_5.0109,825,059 - 9,850,531 (-)NCBI
RGSC_v3.41010,984,721 - 11,009,374 (-)RGD
Celera109,818,860 - 9,842,384 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001038596   ⟹   NP_001033685
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81011,361,168 - 11,386,599 (-)NCBI
mRatBN7.21010,854,732 - 10,880,171 (-)NCBI
Rnor_6.01011,060,496 - 11,085,142 (-)NCBI
Rnor_5.0109,825,059 - 9,850,531 (-)NCBI
RGSC_v3.41010,984,721 - 11,009,374 (-)RGD
Celera109,817,864 - 9,842,384 (-)RGD
Sequence:
RefSeq Acc Id: NP_001033685   ⟸   NM_001038596
- Peptide Label: isoform 2
- UniProtKB: A0A0G2K4Y1 (UniProtKB/TrEMBL),   A6K4R8 (UniProtKB/TrEMBL),   Q2TVU3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001033684   ⟸   NM_001038595
- Peptide Label: isoform 1
- UniProtKB: A0A0G2K5E4 (UniProtKB/TrEMBL),   A6K4R9 (UniProtKB/TrEMBL),   Q2UZS7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000073394   ⟸   ENSRNOT00000085230
RefSeq Acc Id: ENSRNOP00000073217   ⟸   ENSRNOT00000081596
RefSeq Acc Id: ENSRNOP00000005479   ⟸   ENSRNOT00000005479
Protein Domains
CR-type   J

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K5E4-F1-model_v2 AlphaFold A0A0G2K5E4 1-480 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696978
Promoter ID:EPDNEW_R7499
Type:multiple initiation site
Name:Dnaja3_1
Description:DnaJ heat shock protein family member A3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01011,085,156 - 11,085,216EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306527 AgrOrtholog
BioCyc Gene G2FUF-26035 BioCyc
Ensembl Genes ENSRNOG00000003855 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000005479.6 UniProtKB/TrEMBL
  ENSRNOT00000081596 ENTREZGENE
  ENSRNOT00000081596.2 UniProtKB/TrEMBL
  ENSRNOT00000085230 ENTREZGENE
  ENSRNOT00000085230.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.110 UniProtKB/TrEMBL
  Heat shock protein DnaJ, cysteine-rich domain UniProtKB/TrEMBL
  Urease metallochaperone UreE, N-terminal domain UniProtKB/TrEMBL
InterPro DnaJ UniProtKB/TrEMBL
  DnaJ_C UniProtKB/TrEMBL
  DnaJ_dom_sf UniProtKB/TrEMBL
  DnaJ_N UniProtKB/TrEMBL
  Heat_shock_DnaJ_CS UniProtKB/TrEMBL
  HSP40/DnaJ_pept-bd UniProtKB/TrEMBL
  HSP_DnaJ_Cys-rich_dom UniProtKB/TrEMBL
  HSP_DnaJ_Cys-rich_dom_sf UniProtKB/TrEMBL
KEGG Report rno:360481 UniProtKB/TrEMBL
NCBI Gene 360481 ENTREZGENE
PANTHER DNAJ HOMOLOG SUBFAMILY A MEMBER 3, MITOCHONDRIAL UniProtKB/TrEMBL
  DNAJ HOMOLOG SUBFAMILY A MEMBER 3, MITOCHONDRIAL UniProtKB/TrEMBL
Pfam DnaJ UniProtKB/TrEMBL
  DnaJ_C UniProtKB/TrEMBL
  DnaJ_CXXCXGXG UniProtKB/TrEMBL
PhenoGen Dnaja3 PhenoGen
PRINTS JDOMAIN UniProtKB/TrEMBL
PROSITE DNAJ_1 UniProtKB/TrEMBL
  DNAJ_2 UniProtKB/TrEMBL
  ZF_CR UniProtKB/TrEMBL
RatGTEx ENSRNOG00000003855 RatGTEx
SMART DnaJ UniProtKB/TrEMBL
Superfamily-SCOP DnaJ_N UniProtKB/TrEMBL
  HSP40_DnaJ_pep UniProtKB/TrEMBL
  HSP_DnaJ_cys-rich UniProtKB/TrEMBL
UniProt A0A0G2K4Y1 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2K5E4 ENTREZGENE, UniProtKB/TrEMBL
  A6K4R8 ENTREZGENE, UniProtKB/TrEMBL
  A6K4R9 ENTREZGENE, UniProtKB/TrEMBL
  G3V6I5_RAT UniProtKB/TrEMBL
  Q2TVU3 ENTREZGENE, UniProtKB/TrEMBL
  Q2UZS7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-25 Dnaja3  DnaJ heat shock protein family (Hsp40) member A3  Dnaja3  DnaJ (Hsp40) homolog, subfamily A, member 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Dnaja3  DnaJ (Hsp40) homolog, subfamily A, member 3      Symbol and Name updated 1299863 APPROVED
2006-03-07 Dnaja3  DnaJ (Hsp40) homolog, subfamily A, member 3  Dnaja3_predicted  DnaJ (Hsp40) homolog, subfamily A, member 3 (predicted)  Symbol and Name status set to approved 1299863 APPROVED
2005-01-12 Dnaja3_predicted  DnaJ (Hsp40) homolog, subfamily A, member 3 (predicted)      Symbol and Name status set to approved 70820 APPROVED