Tfap4 (transcription factor AP-4)

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Gene: Tfap4 (transcription factor AP-4) Rattus norvegicus

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Symbol:

Tfap4

Name:

transcription factor AP-4

RGD ID:

1308357

Description:

Predicted to enable several functions, including DNA-binding transcription activator activity, RNA polymerase II-specific; E-box binding activity; and histone deacetylase binding activity. Predicted to be involved in several processes, including DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator; negative regulation of macromolecule metabolic process; and regulation of DNA-templated transcription. Predicted to act upstream of or within positive regulation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway and positive regulation of transcription by RNA polymerase II. Predicted to be located in mitochondrion and nucleoplasm. Predicted to be part of transcription repressor complex. Predicted to be active in nucleus. Orthologous to human TFAP4 (transcription factor AP-4); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; alpha-Zearalanol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC360482; Tcfap4; transcription factor AP-4 (activating enhancer binding protein 4); transcription factor AP4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TFAP4 (transcription factor AP-4)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Tfap4 (transcription factor AP4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tfap4 (transcription factor AP-4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TFAP4 (transcription factor AP-4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TFAP4 (transcription factor AP-4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tfap4 (transcription factor AP-4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TFAP4 (transcription factor AP-4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TFAP4 (transcription factor AP-4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tfap4 (transcription factor AP-4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	TFAP4 (transcription factor AP-4)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Mus musculus (house mouse):	Tfap4 (transcription factor AP4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tfap4 (transcription factor AP-4 (activating enhancer binding protein 4))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	hlh-11	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	crp	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	tfap4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	11,507,242 - 11,525,794 (+)	NCBI		GRCr8
mRatBN7.2	10	11,001,338 - 11,019,386 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	11,002,911 - 11,019,386 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	15,711,539 - 15,727,556 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	15,200,351 - 15,216,367 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	10,869,709 - 10,885,786 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	11,204,616 - 11,222,975 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	11,206,226 - 11,223,370 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	9,968,255 - 9,986,048 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	11,144,057 - 11,159,763 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	11,144,056 - 11,159,763 (+)	NCBI
Celera	10	9,964,931 - 9,979,711 (+)	NCBI		Celera
Cytogenetic Map	10	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

epilepsy (ISO)

idiopathic generalized epilepsy (ISO)

intellectual disability (ISO)

Kohlschutter-Tonz syndrome (ISO)

Rubinstein-Taybi syndrome (ISO)

short-rib thoracic dysplasia 9 with or without polydactyly (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-alpha-phellandrene (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

6-propyl-2-thiouracil (EXP)

afimoxifene (ISO)

all-trans-retinoic acid (ISO)

alpha-phellandrene (ISO)

alpha-Zearalanol (EXP)

amitrole (EXP)

amphetamine (EXP)

Aroclor 1254 (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

caffeine (ISO)

calcitriol (ISO)

chlorpyrifos (ISO)

choline (ISO)

cocaine (ISO)

coumarin (ISO)

Cuprizon (EXP)

DDE (ISO)

deoxynivalenol (ISO)

dexamethasone (ISO)

Dibutyl phosphate (ISO)

endosulfan (EXP)

folic acid (ISO)

FR900359 (ISO)

furan (EXP)

gentamycin (EXP)

L-methionine (ISO)

methimazole (EXP)

paracetamol (EXP,ISO)

PCB138 (EXP)

perfluorooctanoic acid (EXP)

potassium chromate (ISO)

propiconazole (ISO)

resveratrol (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

sunitinib (ISO)

Tanshinone I (ISO)

temozolomide (ISO)

testosterone (ISO)

tetrachloroethene (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trichostatin A (ISO)

troglitazone (ISO)

urethane (ISO)

valproic acid (ISO)

zearalenone (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator (ISO)

negative regulation by host of viral transcription (IEA)

negative regulation of cell population proliferation (ISO)

negative regulation of cyclin-dependent protein serine/threonine kinase activity (ISO)

negative regulation of DNA-templated transcription (ISO)

positive regulation by host of viral transcription (IEA)

positive regulation of apoptotic process (ISO)

positive regulation of cysteine-type endopeptidase activity (ISO)

positive regulation of DNA-templated transcription (ISO)

positive regulation of transcription by RNA polymerase II (ISO)

protein-containing complex assembly (ISO)

regulation of mitotic cell cycle phase transition (ISO)

regulation of transcription by RNA polymerase II (IBA)

Cellular Component

mitochondrion (IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (IBA,ISO)

Molecular Function

DNA binding (ISO)

DNA-binding transcription activator activity, RNA polymerase II-specific (ISO)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA,ISO)

E-box binding (ISO)

histone deacetylase binding (ISO)

protein binding (ISO)

protein homodimerization activity (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA,ISO)

sequence-specific DNA binding (ISO)

sequence-specific double-stranded DNA binding (ISO)

transcription cis-regulatory region binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:2123466	PMID:2833704	PMID:7933101	PMID:9931457	PMID:11171123	PMID:12663744	PMID:14645924	PMID:15944155	PMID:16540471	PMID:16924111	PMID:18818310	PMID:19505873

Genomics

Comparative Map Data

Tfap4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	11,507,242 - 11,525,794 (+)	NCBI		GRCr8
mRatBN7.2	10	11,001,338 - 11,019,386 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	11,002,911 - 11,019,386 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	15,711,539 - 15,727,556 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	15,200,351 - 15,216,367 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	10,869,709 - 10,885,786 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	11,204,616 - 11,222,975 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	11,206,226 - 11,223,370 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	9,968,255 - 9,986,048 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	11,144,057 - 11,159,763 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	11,144,056 - 11,159,763 (+)	NCBI
Celera	10	9,964,931 - 9,979,711 (+)	NCBI		Celera
Cytogenetic Map	10	q12	NCBI

TFAP4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	4,257,186 - 4,273,023 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	4,257,186 - 4,273,075 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	4,307,187 - 4,323,024 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	4,247,188 - 4,263,002 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	16	4,247,188 - 4,262,999	NCBI
Celera	16	4,514,186 - 4,529,994 (-)	NCBI		Celera
Cytogenetic Map	16	p13.3	NCBI
HuRef	16	4,274,201 - 4,289,950 (-)	NCBI		HuRef
CHM1_1	16	4,306,776 - 4,322,587 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	16	4,284,515 - 4,300,348 (-)	NCBI		T2T-CHM13v2.0

Tfap4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	4,362,525 - 4,378,625 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	4,362,525 - 4,377,718 (-)	Ensembl		GRCm39 Ensembl
GRCm38	16	4,544,661 - 4,560,762 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	4,544,661 - 4,559,854 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	4,544,661 - 4,559,720 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	16	4,459,889 - 4,474,948 (-)	NCBI		MGSCv36	mm8
Celera	16	5,172,967 - 5,188,068 (-)	NCBI		Celera
Cytogenetic Map	16	A1	NCBI
cM Map	16	2.45	NCBI

Tfap4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955442	13,160,450 - 13,175,057 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955442	13,160,467 - 13,174,288 (+)	NCBI	ChiLan1.0	ChiLan1.0

TFAP4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	4,780,566 - 4,830,819 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	8,564,889 - 8,615,240 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	3,176,129 - 3,226,404 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	4,348,066 - 4,394,809 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	4,348,929 - 4,368,525 (-)	Ensembl	panpan1.1		panPan2

TFAP4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	37,075,462 - 37,111,039 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	37,097,786 - 37,111,072 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	38,403,673 - 38,439,255 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	37,279,975 - 37,315,672 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	37,302,967 - 37,315,669 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	37,073,932 - 37,109,475 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	36,967,095 - 37,002,646 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	37,368,408 - 37,404,234 (+)	NCBI		UU_Cfam_GSD_1.0

Tfap4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	106,486,934 - 106,527,375 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936694	210,672 - 222,619 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936694	210,863 - 222,531 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TFAP4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	38,050,308 - 38,060,817 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	38,043,735 - 38,060,820 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

TFAP4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	3,931,288 - 3,960,039 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	3,932,149 - 3,954,486 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666068	26,695,606 - 26,761,798 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tfap4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624824	2,044,235 - 2,058,662 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624824	2,044,322 - 2,105,571 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Tfap4
82 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	158
Count of miRNA genes:	99
Interacting mature miRNAs:	119
Transcripts:	ENSRNOT00000006979
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2313095	Bss62	Bone structure and strength QTL 62	1.5	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	5387014	50387014	Rat
631660	Hcar1	Hepatocarcinoma resistance QTL 1	3.4	0.0001	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	10	6154182	15990232	Rat
1576304	Schws7	Schwannoma susceptibility QTL 7		0.0115	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	10	4765527	19816042	Rat
8662860	Vetf10	Vascular elastic tissue fragility QTL 10			artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	10	6154182	73453136	Rat
2313066	Bss63	Bone structure and strength QTL 63	1.4	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	10	5387014	50387014	Rat
7411611	Foco17	Food consumption QTL 17	18.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	10	1	42315980	Rat
631554	Bp133	Blood pressure QTL 133		0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	743364	63851208	Rat
2313064	Bmd71	Bone mineral density QTL 71	0.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	10	5387014	50387014	Rat
2303118	Mamtr7	Mammary tumor resistance QTL 7		0.003	mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	10	9658275	104670812	Rat
70223	Bp57	Blood pressure QTL 57	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	1	80676123	Rat
634329	Pia15	Pristane induced arthritis QTL 15	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	1	24158324	Rat
1578761	Stresp21	Stress response QTL 21	3.3		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	6375746	51375746	Rat
2293680	Bss40	Bone structure and strength QTL 40	5.66	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	10	1	35225947	Rat
7387235	Uae41	Urinary albumin excretion QTL 41	5.26	0.1874	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	10	1	29497586	Rat
2313104	Bss61	Bone structure and strength QTL 61	0.9	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	10	5387014	50387014	Rat
2298544	Neuinf9	Neuroinflammation QTL 9	4.6		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	10	5801990	62146030	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6357896	96121100	Rat
10401803	Kidm50	Kidney mass QTL 50			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	10	418344	45418344	Rat
737820	Alc9	Alcohol consumption QTL 9	2.2		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	10	5144027	19233348	Rat
2313081	Bss64	Bone structure and strength QTL 64	1.3	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	10	5387014	50387014	Rat
631828	Alc5	Alcohol consumption QTL 5	2.4		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	10	5144027	17245662	Rat
634327	Hc4	Hypercalciuria QTL 4	2.4		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	10	1	38328221	Rat

Markers in Region

AI101186

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	11,019,125 - 11,019,359 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	11,222,715 - 11,222,948	NCBI	Rnor6.0
Rnor_5.0	10	9,985,788 - 9,986,021	UniSTS	Rnor5.0
RGSC_v3.4	10	11,159,503 - 11,159,736	UniSTS	RGSC3.4
Celera	10	9,979,450 - 9,979,684	UniSTS
RH 3.4 Map	9	675.6	UniSTS
Cytogenetic Map	10	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108267	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245819	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245820	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245822	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245823	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597365	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086267	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086268	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000006979 ⟹ ENSRNOP00000006979

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	11,002,911 - 11,019,386 (+)	Ensembl
Rnor_6.0 Ensembl	10	11,206,226 - 11,223,370 (+)	Ensembl

RefSeq Acc Id:

NM_001108267 ⟹ NP_001101737

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	11,509,321 - 11,525,794 (+)	NCBI
mRatBN7.2	10	11,002,911 - 11,019,386 (+)	NCBI
Rnor_6.0	10	11,206,104 - 11,222,975 (+)	NCBI
Rnor_5.0	10	9,968,255 - 9,986,048 (+)	NCBI
RGSC_v3.4	10	11,144,057 - 11,159,763 (+)	RGD
Celera	10	9,964,931 - 9,979,711 (+)	RGD

Sequence:

show sequence

GCCCGGGGAGGCAGGCTGGAGAGACCTCCCTCCCGCCCCTCCCGCCCGCCTCCCTCCCCTCGCC
GCTGCTGCTGCCGCCAGCATCTGGGACCGGCCGATTCTGCACCTCCGTCCGGCGCTGCCCTTTG
ATTCGGATTTCCATCTTGCATTCTCCGGCTGACCGCGAGACCTGGCTCGTGCACAGAAGGGGGG
CCTATCGCTATGGAGTATTTCATGGTGCCCACTCAGAAGGTGCCCTCTTTGCAACATTTCAGGA
AAACAGAGAAAGAAGTGATAGGAGGGCTCTGTAGCCTAGCCAACATTCCACTGACTCCTGAGAC
CCAGAGGGACCAGGAAAGGCGGATTCGACGGGAAATTGCCAATAGCAACGAGCGGAGGCGCATG
CAGAGTATCAACGCGGGCTTCCAGTCCCTCAAGACCCTTATTCCCCACACAGACGGAGAGAAGC
TCAGCAAGGCAGCCATTCTCCAGCAGACAGCAGAATACATCTTCTCTCTTGAGCAGGAGAAGAC
TAGACTCCTGCAGCAGAACACGCAGCTCAAGCGTTTTATCCAGGAGCTGAGTGGCTCATCCCCG
AAGCGGCGGCGGGCAGAAGACAAGGACGAGGGCATTGGCTCACCCGACATCTGGGAGGATGAGA
AAGCTGAGGACCTTAGGAGAGAGATGATCGAGCTGCGGCAACAACTGGACAAGGAGCGCTCCGT
GCGGATGATGCTGGAAGAGCAGGTGCGCTCTCTGGAGGCCCACATGTACCCGGAAAAACTCAAG
GTGATTGCCCAGCAGGTGCAGCTGCAACAGCAGCAGGAGCAGGTGCGGCTGCTGCACCAGGAGA
AGCTGGAGCGGGAACAGCAGCACCTGCGGACCCAGCTCCTGCCTCCTCCAGCCCCCACCCACCA
CCCCACCGTGATTGTGCCTGCACCAGCCCCGCCTTCCTCCCACCACATCAATGTTGTCACTATG
GGTCCTTCCTCAGTCATCAACTCTGTCTCTACATCCCGGCAAAATCTGGACACCATCGTGCAGG
CCATCCAGCACATTGAGGGCACCCAGGACAGACAGGAGCTGGAAGAGGAACAGAGGCGAGCAGT
TATCGTGAAGTCTGTCCGCAGCTGCCCGGAGGCCCACACCTCTGATACTGCCTCGGACTCCGAG
GCCTCGGACAGCGACGCCATGGACCAGAGCCGGGAGGAGCCTTTGGGGGACGGGGAGCTTCCCT
GACCACCCCCCAGCCCTCCTCTCCCTTCTGGGGGTTAGAGGGGGCCGGGGCAACAACAGGGAGA
AACATGGGTGAATGAGGAATTTTTACAAAATTATGATGTCATTTGGGTCTCTTTTATGACCTCC
TTTTCAATACTGTAAGTCGACCTTTGATCGAAGCCACCGGAGCCCAGGTCCCGGGGTTGTGGTG
GTGCATAGCACGCGTGGGAGCATGGGGCTCCAGGGCTGGGCCTCGGCCCTGGGGCCGAGGAAGC
TGACACTGAGGTGCCTGGCCTCTCTCGCCAAAAAGCTTTTTTATTTTTTGTTTTTGTTTTGTTT
TTGTTTTTTCCTTCCATTTAAACGTGTTTTTAAGAACAGGGAAAATCAAACAAAACCCCAAGTT
TTTTGCTTCCTCCCCAGAGCCAGCCCGAGGCCGTCTGTCTCCACCTCTTCCCTCTATTGGGTTG
TCTTTTTCTCTTTTAAGCACTTACATGGGTTGGGGGTCAGGCTGGGTTGGGGCTTTCTGGGGAT
CCGGACCCGGGAACAGGGGGACCCGGGAATCCGGGATCAACATTGCTTCTCGGTTGGGGTTTGC
TGCTGCCATTGTCCCCTCCCCCTCCCCACCTCAGCAACAGAATTGGCCACTCTCTGCCTCCACC
TTCCACCTTCCCCTGCAGGGTTCCTGTCATTGATCCCAAAAATGTCTTTGTCTCTCTTTTTGTT
TTGTTTGTTGTTGGTTTTATTTTGGTTTTGGTTTTGTATTTTTTTTTTTTAATTTTAAATTTTC
TTTTTTTCTTTCTTTTTTTACAATTTTGAGGTCTTTGTGTCCAAGGAGAAGCTATTATATTTTG
TTAAGAAAATGGGGGTAGGGAACAAAATACCAAGAGGCCATTGTGCCTTTGTAAAGAAACAAAA
TAAAATTTGTACTTTGTTTTTTAG

hide sequence

RefSeq Acc Id:

XM_006245819 ⟹ XP_006245881

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	11,507,242 - 11,525,793 (+)	NCBI
mRatBN7.2	10	11,001,338 - 11,019,385 (+)	NCBI
Rnor_6.0	10	11,204,616 - 11,222,974 (+)	NCBI
Rnor_5.0	10	9,968,255 - 9,986,048 (+)	NCBI

Sequence:

show sequence

CTAGGAAGTGCTGCTTTTCAAGTCTCCCTGAGAATTAGGTGCTAACTGATCTGGGATCTAAGAT
TAGAGAAATTGCTTATCAGGTTGATCTGAAGATTGACCAATATGAGCGCAAAACTAACTAGCCA
TGCTCTGGATGTTGGTAGTATCAAACAATGTTTTCTAATAATACCTAACAATTGTTATTAATAG
AAGTATTTCAACTAAGAGGCGCGATTTGGGTGGAGCCTTGGAAGGCGACTGATGGCGCAGGGAA
AGGAGCTGAGCTGGAGTGAGGACATTCCAAGGCAGGCGTGGGCTTCCTGAGCCTGGGGCCAAGC
CCTCCAGGAGTCTGGGGAGGGCCGGGACCGGAAGGTGGAGGCGTGGCAGAGGACGGAAGCTCAC
CCCTAAAATGTCCCCTCCCTCGCCCCAGACCACGACTCCCCCATTGTAGAGAGCGCCCTCTGGC
GGTGGAGCAAGTTCCAACTCGCCTTCCCCATGAATGAGAAGCTGCAGCCCGCTGCGCGCGAATC
CGGAAAATAAGCCTAGCCAACATTCCACTGACTCCTGAGACCCAGAGGGACCAGGAAAGGCGGA
TTCGACGGGAAATTGCCAATAGCAACGAGCGGAGGCGCATGCAGAGTATCAACGCGGGCTTCCA
GTCCCTCAAGACCCTTATTCCCCACACAGACGGAGAGAAGCTCAGCAAGGCAGCCATTCTCCAG
CAGACAGCAGAATACATCTTCTCTCTTGAGCAGGAGAAGACTAGACTCCTGCAGCAGAACACGC
AGCTCAAGCGTTTTATCCAGGAGCTGAGTGGCTCATCCCCGAAGCGGCGGCGGGCAGAAGACAA
GGACGAGGGCATTGGCTCACCCGACATCTGGGAGGATGAGAAAGCTGAGGACCTTAGGAGAGAG
ATGATCGAGCTGCGGCAACAACTGGACAAGGAGCGCTCCGTGCGGATGATGCTGGAAGAGCAGG
TGCGCTCTCTGGAGGCCCACATGTACCCGGAAAAACTCAAGGTGATTGCCCAGCAGGTGCAGCT
GCAACAGCAGCAGGAGCAGGTGCGGCTGCTGCACCAGGAGAAGCTGGAGCGGGAACAGCAGCAC
CTGCGGACCCAGCTCCTGCCTCCTCCAGCCCCCACCCACCACCCCACCGTGATTGTGCCTGCAC
CAGCCCCGCCTTCCTCCCACCACATCAATGTTGTCACTATGGGTCCTTCCTCAGTCATCAACTC
TGTCTCTACATCCCGGCAAAATCTGGACACCATCGTGCAGGCCATCCAGCACATTGAGGGCACC
CAGGACAGACAGGAGCTGGAAGAGGAACAGAGGCGAGCAGTTATCGTGAAGTCTGTCCGCAGCT
GCCCGGAGGCCCACACCTCTGATACTGCCTCGGACTCCGAGGCCTCGGACAGCGACGCCATGGA
CCAGAGCCGGGAGGAGCCTTTGGGGGACGGGGAGCTTCCCTGACCACCCCCCAGCCCTCCTCTC
CCTTCTGGGGGTTAGAGGGGGCCGGGGCAACAACAGGGAGAAACATGGGTGAATGAGGAATTTT
TACAAAATTATGATGTCATTTGGGTCTCTTTTATGACCTCCTTTTCAATACTGTAAGTCGACCT
TTGATCGAAGCCACCGGAGCCCAGGTCCCGGGGTTGTGGTGGTGCATAGCACGCGTGGGAGCAT
GGGGCTCCAGGGCTGGGCCTCGGCCCTGGGGCCGAGGAAGCTGACACTGAGGTGCCTGGCCTCT
CTCGCCAAAAAGCTTTTTTATTTTTTGTTTTTGTTTTGTTTTTGTTTTTTCCTTCCATTTAAAC
GTGTTTTTAAGAACAGGGAAAATCAAACAAAACCCCAAGTTTTTTGCTTCCTCCCCAGAGCCAG
CCCGAGGCCGTCTGTCTCCACCTCTTCCCTCTATTGGGTTGTCTTTTTCTCTTTTAAGCACTTA
CATGGGTTGGGGGTCAGGCTGGGTTGGGGCTTTCTGGGGATCCGGACCCGGGAACAGGGGGACC
CGGGAATCCGGGATCAACATTGCTTCTCGGTTGGGGTTTGCTGCTGCCATTGTCCCCTCCCCCT
CCCCACCTCAGCAACAGAATTGGCCACTCTCTGCCTCCACCTTCCACCTTCCCCTGCAGGGTTC
CTGTCATTGATCCCAAAAATGTCTTTGTCTCTCTTTTTGTTTTGTTTGTTGTTGGTTTTATTTT
GGTTTTGGTTTTGTATTTTTTTTTTTAATTTTAAATTTTCTTTTTTTCTTTCTTTTTTTACAAT
TTTGAGGTCTTTGTGTCCAAGGAGAAGCTATTATATTTTGTTAAGAAAATGGGGGTAGGGAACA
AAATACCAAGAGGCCATTGTGCCTTTGTAAAGAAACAAAATAAAATTTGTACTTTGTTTTTTA

hide sequence

RefSeq Acc Id:

XM_006245822 ⟹ XP_006245884

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	11,510,384 - 11,525,793 (+)	NCBI
mRatBN7.2	10	11,003,972 - 11,019,385 (+)	NCBI
Rnor_6.0	10	11,207,157 - 11,222,974 (+)	NCBI
Rnor_5.0	10	9,968,255 - 9,986,048 (+)	NCBI

Sequence:

show sequence

GCTGCATTGTGGGACTTGTAGGCGCTTCGGGGCCACGCTTTACTTGCACAAAGCTTGGTCGTAG
CCAACTGGGTGGGCTAAGCAAGCCAGGTGGGGAGGCCTTTTGGGGAGAGTGCATCTTAGGTTGC
TTCTAGGCTCAAGTCTGCTCCCTGTTGCCTGTGGTTCTCTGCAAACTTTGCTGTCCCACGTCTG
TACCCCAGTCATAAACGCAAAGCGTTGAATCTCCTGGCCGGGTGGGTGGTCGGAGGTCTGCAAG
CTCTCTTGAGACACCCCTTAGTGAACTTGGACCTACTTAGGTTGCCCCAGATCCCCCCTCTATT
AAATCGCGACCGACCAGTGGCCGAATCTCCCTAAACCCTTGTTAAATGGTCCTGTCTGGAATTA
CTGTTGCCGGCCGTGGTATCTGTTCATTGAACCCTACGAGCCGGCTGGGTCGGGGCGGGGATGG
TGGTGGTGCACGCAAGGAGAGGTTTCTCCAGCGCGCTTAAGTTTGAAACCGACGATCCCTTTTC
TGCCTGCCGCGCTACTCTAGGAGCGTAATGGCTCCCCAGGGCTGGGGCCACGTGCTCCGACACC
CCAGCCAGGCAAGGCTGGGATTGAAGGAGGAGGAGGAGCCCGCTGAGTGGCACGGCTGGTTGGT
AGACAGCAACGCCTGTGGGGCAGGTTGCTGCATAGGTATAAAACCCAGGCAGGGATCACACTTT
ACTTTCAAGTTGAGAGCCAATACCTAGGGCCTGTTGATAGATGTAGCAGCTGGCAACAACCCCC
CCCTCCATCCCCCATCCTCCTTCCCCTCCCTCCGCTGGCACTAAGGTCCACCTGAGGGCCCAGC
AGGTACAAAACAGCAATCTACAAAACTCTTGGACTCTTGCTATGAGTTCATTTGTTTTCTGGTT
TCTTTGTAAAGATGGATACAGAAGCTAAGAAAGGCACCAGTCAGAGCAAGTGTACAGTTGGACT
TGACTCCTAAGTTTGCTGTTGTGCTGGATCTTCTGAGCTGGCTTGGGTAGTGGGAAGTGAGGCT
TGATTTGCTTCATGTTCTGGAGAGGTCATTCTGGACCCGATCCTGCATAGGCTTTGACAGTAGG
AACCTCAGTTTGCTATCCCTGGGCCTTTTGGTACTCCCGCTTCAATGGCTTCACTCTGTTCCTT
TCTCCAGACCTGTGTTGCTGGAGGGCAATACCCTTGGGTGTTGTCAGACCTAGTGATTGAGGAA
CCATAACCTGCCTACGGCACACAGGTCCTCAGCCTGTCTTGCTAGGAGACAGTTGGTGGTACTC
GGGGTATGGAGGAACACGGCCTCTAGGTGTGTTCATTTTCAGCTGGAGCTACAGCTGGGAGGGC
CGTGGTGGCTGGAGTGTGGGCTGGGCAGGAGCTTATGGTGGATGGACTCTGGTTTGTTTCAGGC
TATTGGACTTTGCTCCACCCCTCCCTGCTTAGCTGGGTCCTCTCTGTCTGACTCCTATGCCTCT
CGGGCTAACCAGAAAGAGCCCGGCAGAATGGCACACTCTGATGTCTTGCTTGAAGTTTTGGACC
TAATGGTTCTGTGAGACTTGGAGATATATATTATAGGCAGTACAAGACTCTGGAAAGCAGGTGC
ATGGAAGTTTCCATCCTTGTAAGTGCATGTGCATGCATGTATGTGCATGTGCATAGGTGACTTC
CGCAGTTGCTCCCAGGTACAGTTGAGGAGGTTTATTGTAGACATGGAAAGAAAGCAGCCGGAGG
GATCTGGAAGGGTCCAGACTGAACATGGCCATGAGAGGAGAGAGAGAGCAAAGAGAGGGAGTAC
CTGGGTACCCGAATGCCAAGAGGACAGTAGCTAATAGGGATCAGAGGTTGGGGGATGGGAAGCT
CATTCTAGTCCCTGGGCTGGAAGAGTTTAGGGTAGGAAGTGGGGTGTGCCAGCCATGACTCTGT
AACAGGTGCTGAGAGATGTTGGGAGAGCCTGGTGGCCAGCATCCCCTTTGATACATTAGGTAGC
ACCTCAGCCATCTATCCTGAACTTGATCCCTAACATTCTTCCACCTTATTTGTTTGCTTATATT
TTTATTTAATTTTTCTTAATCTCAGGTTTTTAAATGCGCGTGGGTGTTTTGCCTGTATGCGTAT
CTGCGTTACCACACATGTGCCCTCAGTGGCCAGAAGAGGGCAACAGATCCCCTGGAGTAGTTGT
GTGCTGCTGTGTGGGTGCTGGGAACTGAACTTGGGTCCTCTGGAGTAGAAAAAGTCAGTTCTCT
CAGCTTTTCAACTGCCTGCTCTCCGCCATCTCTTCAGCTCAGATGGAGGGACCCAGGCCGGCTT
CAAACTTGGGATCCTTTTTCCTCTTTAGCATTTCCTACTGAGGTAAAATTCCACAGCCAGCGTC
TGCTCCTTGTTTGTAGACCTTTAGACCTAGTCCTAAGCAAGTAAGGTGGGGGAATGTTAGATCT
CAAGGCCTCATATTTTCAGAAGAGGTCTTGAACTGAACCGGAGCTCACCGTTGCATCTGTGCTG
GCCGGCTTCACAGATCCACCTATCTCTGCGCCCCCTCCCCCACCCTCCAGCCCCTGAGTTTTGA
AGTAGCAGATGCGCAGTGCCCAGCTTTTGTGTGGATGCAGGAGCTCTGAATTCAGGTCCCCACG
GTTATGTGGCTCAGCTAACTCCTTAGTGCACCCCTCCCCCACAAAAAAGATAGGTTCTCATTTA
GCCCAGGCTGGCCTCCAACTTGACTTGTAAGTTAAGATGACCTCGAACTCCCAATCCTGCTGCT
TTCTACCAAGTTGCTGGAGGGTCTAGCATGTACTGTCATCCTGGGTATCGTACAAACTCTTTAA
TAAAAAGTTCCTTTAAGGGCCGGCAAGATGGCTCAGTAGATAAGGTCCAGGTCCCTGTGAACAA
GCCGAATTATCTGATTTATCCCCGTGTCCTGCAGGTGGATCTCTAAGAGCTCAAGGCAAGCCTG
GTTTACATAGCAAGTTCCAGGACAACCAGGGCTACACTGAGAGATCCTGTCTTAAAAGAAGGAG
AGAGGAAGAGAGGGAGAGAGGTGTCATTAGAGAGTATTAAGAATTTTGGCATGAGAGTTGGGGA
TTTAGCTCAGTGGTAGAGCCCTTGCCTAGTAAGTGCAAGGCCCTGGGTTCGGTCCCCAGCTCCG
AAAAAAAGAAAAAAAGAAAAAAAAAAAAGAAGAAGAAGAACTTTGGCATGTTTGTTGTCTCTGG
CCATGTATTTATGAAGAGTCAGCTTGACGCTGGCTAAGGATACAGACTGTGTGAAGTCCCGACC
GCCGCCGTCCTCGGCAGGTCACCGACTTGTGATGATGAAGGGTTGGTCTGTTCCCTTAGAGGTT
GTCTTGGATAGATAGCTGGATGAAAACTTCAGGGGAAGTGGGCCATTCTTTCCTCCTCTTCTTA
CACCGCCCAGCCTTCCTCTGACTTCCATCCAACTTCACCATGACCCAGTGTAAGGCAGTGTAAC
CTCTGTGTGGAAGCGAGGAGAGCCGAAATGGAGAGATTTCAGCCGCTCGGCTTCCATAGCTAGC
GAGTGTCCGGGCAGGTGTGGGCGTCTGCGCCTGCGCGGGCTTTCTGTGATGGGCAGAAGTTGCT
GGGGAAGAGATGTCTCAAGGAGAGGTGATCAGGGCCTGCCAGGGCTGTAGAGGGAGTGGCCTCT
ACAGGAGAAAGAGGGCTGAACTTCTATCGCTCCTTCTCCGGGTATGGGAGAAAATACCATGTGG
CCTTCCCCTGCTTCGATTGCAAATGCTGGGTGTTTTAGGCATGCCAAGTGGGTTCGGGCCATGA
GAAAAGAGAGTTGGTGGTGGCCAGTTAGAGGGCGTGGCCAGGCAAATGAGTGGACGGTGATGGG
GCTCTTTTGGGCTTAAGCTGGGCAGGAGGATCCGGTACTAGTCAGGGATGGAGATGTGAACAAC
CAGCCTGCATCCTGCTCCCGGGCATCTGGCTGGAGGGCTGCCATCCTTCAGTAGGGGTAGTGAT
GACCCCGCTCTTAGGCTGGGTGGCCTAGTTCTGTTTCTTTACCATCGGCCCAGTTCTGTATTCC
TGAAGCCAGGCAGTGGCAGTCAGCAGCAGTCTGGCTGTCATCACAGACTAGCGCCACCCCATGC
CGGAGGTCCGTTCCCGCAGTGTTCATTAGGGGAATCCGAAGTTTTGAGGGTGTGGGGCTTTTTC
TTTTTTTTGTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTGTTTTTTTTGTTTTGTAACTGTCCC
AAAGGGCACACAATTTATTTGTGGGGCTTTTTCATATGATTACTTACCGTGAGTTGGAATTTAT
AGGCATGTATGTAAGGAAATCTACTTTCTCTAGTGTAATGTCACCTGGAGGTGACAGTGAGGCT
AGTCAGCAGGCAGGATCAGCGTTCCACCAGGGGTAATTCGCAGTTAGTCACACTACCCGCTAGG
GCACACACTAGCTTACCTGCAGTCCACCAGGACCAGCATATAGTGTGTTAGTTCTGTCGCCTGG
AGCTTCCCAGGCTGTTTGAATGAGTAGTTGAGTCAAACCGAGTCCCCAGGCAGAGCTGCGGCTT
TATGAGGTCAGAGACTGTCCTGACAACTAGGTCCAGGGGCGACCATGTTAACTAGCACCTGGTT
CTTAAGCACAGAGGCTGGGTGGAATGTTTGGGAAGGATCAGGCCTGCTCGCTCTCTGAGACTCA
AGGTGTTTACCATCTGGGAGTTCTGTGATAGAACCTTTCAGACCTGGGACTCTGAGGTTCCCCA
GATAGTGCATCTTCCGGGGAATGGGGAGAGAGCTGACGTTGGCTCCAGGGCTGCATTTCTTTTC
AAGGATAGCTGAGCTAGTGGGACCTGCAGGCGTGAGGCCTAGCCAACATTCCACTGACTCCTGA
GACCCAGAGGGACCAGGAAAGGCGGATTCGACGGGAAATTGCCAATAGCAACGAGCGGAGGCGC
ATGCAGAGTATCAACGCGGGCTTCCAGTCCCTCAAGACCCTTATTCCCCACACAGACGGAGAGA
AGCTCAGCAAGGCAGCCATTCTCCAGCAGACAGCAGAATACATCTTCTCTCTTGAGCAGGAGAA
GACTAGACTCCTGCAGCAGAACACGCAGCTCAAGCGTTTTATCCAGGAGCTGAGTGGCTCATCC
CCGAAGCGGCGGCGGGCAGAAGACAAGGACGAGGGCATTGGCTCACCCGACATCTGGGAGGATG
AGAAAGCTGAGGACCTTAGGAGAGAGATGATCGAGCTGCGGCAACAACTGGACAAGGAGCGCTC
CGTGCGGATGATGCTGGAAGAGCAGGTGCGCTCTCTGGAGGCCCACATGTACCCGGAAAAACTC
AAGGTGATTGCCCAGCAGGTGCAGCTGCAACAGCAGCAGGAGCAGGTGCGGCTGCTGCACCAGG
AGAAGCTGGAGCGGGAACAGCAGCACCTGCGGACCCAGCTCCTGCCTCCTCCAGCCCCCACCCA
CCACCCCACCGTGATTGTGCCTGCACCAGCCCCGCCTTCCTCCCACCACATCAATGTTGTCACT
ATGGGTCCTTCCTCAGTCATCAACTCTGTCTCTACATCCCGGCAAAATCTGGACACCATCGTGC
AGGCCATCCAGCACATTGAGGGCACCCAGGACAGACAGGAGCTGGAAGAGGAACAGAGGCGAGC
AGTTATCGTGAAGTCTGTCCGCAGCTGCCCGGAGGCCCACACCTCTGATACTGCCTCGGACTCC
GAGGCCTCGGACAGCGACGCCATGGACCAGAGCCGGGAGGAGCCTTTGGGGGACGGGGAGCTTC
CCTGACCACCCCCCAGCCCTCCTCTCCCTTCTGGGGGTTAGAGGGGGCCGGGGCAACAACAGGG
AGAAACATGGGTGAATGAGGAATTTTTACAAAATTATGATGTCATTTGGGTCTCTTTTATGACC
TCCTTTTCAATACTGTAAGTCGACCTTTGATCGAAGCCACCGGAGCCCAGGTCCCGGGGTTGTG
GTGGTGCATAGCACGCGTGGGAGCATGGGGCTCCAGGGCTGGGCCTCGGCCCTGGGGCCGAGGA
AGCTGACACTGAGGTGCCTGGCCTCTCTCGCCAAAAAGCTTTTTTATTTTTTGTTTTTGTTTTG
TTTTTGTTTTTTCCTTCCATTTAAACGTGTTTTTAAGAACAGGGAAAATCAAACAAAACCCCAA
GTTTTTTGCTTCCTCCCCAGAGCCAGCCCGAGGCCGTCTGTCTCCACCTCTTCCCTCTATTGGG
TTGTCTTTTTCTCTTTTAAGCACTTACATGGGTTGGGGGTCAGGCTGGGTTGGGGCTTTCTGGG
GATCCGGACCCGGGAACAGGGGGACCCGGGAATCCGGGATCAACATTGCTTCTCGGTTGGGGTT
TGCTGCTGCCATTGTCCCCTCCCCCTCCCCACCTCAGCAACAGAATTGGCCACTCTCTGCCTCC
ACCTTCCACCTTCCCCTGCAGGGTTCCTGTCATTGATCCCAAAAATGTCTTTGTCTCTCTTTTT
GTTTTGTTTGTTGTTGGTTTTATTTTGGTTTTGGTTTTGTATTTTTTTTTTTAATTTTAAATTT
TCTTTTTTTCTTTCTTTTTTTACAATTTTGAGGTCTTTGTGTCCAAGGAGAAGCTATTATATTT
TGTTAAGAAAATGGGGGTAGGGAACAAAATACCAAGAGGCCATTGTGCCTTTGTAAAGAAACAA
AATAAAATTTGTACTTTGTTTTTTA

hide sequence

RefSeq Acc Id:

XM_006245823 ⟹ XP_006245885

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	11,515,230 - 11,525,793 (+)	NCBI
mRatBN7.2	10	11,009,542 - 11,019,385 (+)	NCBI
Rnor_6.0	10	11,213,107 - 11,222,974 (+)	NCBI
Rnor_5.0	10	9,968,255 - 9,986,048 (+)	NCBI

Sequence:

show sequence

CCAGGGCCTTGCGCTTCCTAAGCAATCGCTCTACCATTGAGCTAAATCCCCAACCCCTAGGGTA
GCTCTTGAAGTAGCCTAAGGGTGGTTACAAGGCTTTCTCTTGAGACCCAGTCTTCGGTCAGTTT
TAGCCTTTGGGGCACCATAAGCAGGGGCTCAGAGACTGGTGTTGTAGGGGAAACTCCCACAACA
AACCTAGGGTGGGGTAGGGGTTATAATCACTGGGAAACTTGCTTTCTGTTACCTCTCTCTCTTT
CTTTCTCTATGTATATATGTATGAATGAATATATATGTATGTATATATATATATATTTATATTG
TTTATATGTATGAGTGCCTACAGAGCCCAGAAGGTGTTGGTTTCCTCAGGTTGTAGTTACAGGT
AGTTTTGAGCCACTGAACTCAAGTCCTCTAGAAGGACTGGAAAGACTCTTAATGGTTTAACTAT
CTCTTCAGCCTTCCCACACACACTTTTTTTTAAATTTTGAGACAGGGTCTTATGTAGCATGGAG
CTCAGGCTTACTTTGAACTTGCTATGTGGTTGAGGATGGTCTTGAACTTGTCTCCCAAGTGCCG
GTGTTCCTGGCGTGTTGCCACCATGCCCATCACCTCATCTTTTTCTTACTTGTTTTTGAGACCG
GAGTCTTCCTATGTAGCCCAGGCTGGCCTCAAAACTCTCACTCATGTAGCATCAGTCTGCTCAG
TGCTGAAGCTACAGCCTAGCCAACATTCCACTGACTCCTGAGACCCAGAGGGACCAGGAAAGGC
GGATTCGACGGGAAATTGCCAATAGCAACGAGCGGAGGCGCATGCAGAGTATCAACGCGGGCTT
CCAGTCCCTCAAGACCCTTATTCCCCACACAGACGGAGAGAAGCTCAGCAAGGCAGCCATTCTC
CAGCAGACAGCAGAATACATCTTCTCTCTTGAGCAGGAGAAGACTAGACTCCTGCAGCAGAACA
CGCAGCTCAAGCGTTTTATCCAGGAGCTGAGTGGCTCATCCCCGAAGCGGCGGCGGGCAGAAGA
CAAGGACGAGGGCATTGGCTCACCCGACATCTGGGAGGATGAGAAAGCTGAGGACCTTAGGAGA
GAGATGATCGAGCTGCGGCAACAACTGGACAAGGAGCGCTCCGTGCGGATGATGCTGGAAGAGC
AGGTGCGCTCTCTGGAGGCCCACATGTACCCGGAAAAACTCAAGGTGATTGCCCAGCAGGTGCA
GCTGCAACAGCAGCAGGAGCAGGTGCGGCTGCTGCACCAGGAGAAGCTGGAGCGGGAACAGCAG
CACCTGCGGACCCAGCTCCTGCCTCCTCCAGCCCCCACCCACCACCCCACCGTGATTGTGCCTG
CACCAGCCCCGCCTTCCTCCCACCACATCAATGTTGTCACTATGGGTCCTTCCTCAGTCATCAA
CTCTGTCTCTACATCCCGGCAAAATCTGGACACCATCGTGCAGGCCATCCAGCACATTGAGGGC
ACCCAGGACAGACAGGAGCTGGAAGAGGAACAGAGGCGAGCAGTTATCGTGAAGTCTGTCCGCA
GCTGCCCGGAGGCCCACACCTCTGATACTGCCTCGGACTCCGAGGCCTCGGACAGCGACGCCAT
GGACCAGAGCCGGGAGGAGCCTTTGGGGGACGGGGAGCTTCCCTGACCACCCCCCAGCCCTCCT
CTCCCTTCTGGGGGTTAGAGGGGGCCGGGGCAACAACAGGGAGAAACATGGGTGAATGAGGAAT
TTTTACAAAATTATGATGTCATTTGGGTCTCTTTTATGACCTCCTTTTCAATACTGTAAGTCGA
CCTTTGATCGAAGCCACCGGAGCCCAGGTCCCGGGGTTGTGGTGGTGCATAGCACGCGTGGGAG
CATGGGGCTCCAGGGCTGGGCCTCGGCCCTGGGGCCGAGGAAGCTGACACTGAGGTGCCTGGCC
TCTCTCGCCAAAAAGCTTTTTTATTTTTTGTTTTTGTTTTGTTTTTGTTTTTTCCTTCCATTTA
AACGTGTTTTTAAGAACAGGGAAAATCAAACAAAACCCCAAGTTTTTTGCTTCCTCCCCAGAGC
CAGCCCGAGGCCGTCTGTCTCCACCTCTTCCCTCTATTGGGTTGTCTTTTTCTCTTTTAAGCAC
TTACATGGGTTGGGGGTCAGGCTGGGTTGGGGCTTTCTGGGGATCCGGACCCGGGAACAGGGGG
ACCCGGGAATCCGGGATCAACATTGCTTCTCGGTTGGGGTTTGCTGCTGCCATTGTCCCCTCCC
CCTCCCCACCTCAGCAACAGAATTGGCCACTCTCTGCCTCCACCTTCCACCTTCCCCTGCAGGG
TTCCTGTCATTGATCCCAAAAATGTCTTTGTCTCTCTTTTTGTTTTGTTTGTTGTTGGTTTTAT
TTTGGTTTTGGTTTTGTATTTTTTTTTTTAATTTTAAATTTTCTTTTTTTCTTTCTTTTTTTAC
AATTTTGAGGTCTTTGTGTCCAAGGAGAAGCTATTATATTTTGTTAAGAAAATGGGGGTAGGGA
ACAAAATACCAAGAGGCCATTGTGCCTTTGTAAAGAAACAAAATAAAATTTGTACTTTGTTTTT
TA

hide sequence

RefSeq Acc Id:

XM_017597365 ⟹ XP_017452854

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	11,510,084 - 11,525,793 (+)	NCBI
mRatBN7.2	10	11,003,239 - 11,019,385 (+)	NCBI
Rnor_6.0	10	11,206,448 - 11,222,974 (+)	NCBI

Sequence:

show sequence

GCCCGGGCGGGTGCGCGTGTGCGCACGCATGGCTCGCGCCTCCGACCTCGCTCGCCTTTCTTAG
CCACCGGGTCCGCCGCAGTCTTATGTGCCCTGCTTGCGCTGCCTAGGGACTCTCTTCCCTTGGA
ACGGGGAGACCCCGTGAGGCTCTGGCCACTTTTGTCCGCTGCAGGCGGGCGAGTCGCGACGTTT
GTAAATTGCAAACAGACCCACGTGGTGCTGCAGCAGTCCCGGCCATGCTTGCTGCTGGTGGCTT
TCACCCAACGCTTCCTCCTCCCCCCGCCAGCTTTTGCTTCCTTCCTTTTCCTTGCTTCCTCGCG
CTTTCTGGGAACCCTCTTCTAAGGAGGTTTTTGGGGGGTCCGGGGCGTGCGAGAGGACAGCTAC
AATGCTGCCATGCCGTCGCTCCTGGCTGCGGGGTTGGGGGGGGCGGGGAGCCGGGTGGTGTGAA
CGTTTGCAGAGAACAGAGCTGCAGCAGGGTTGGGGGCGTGCTCGCTTGAGGCTGCGAGGCGTAC
GTGGACCCTTAGTCGCCATGCTTCGAGCAGGGAAGTCGCGGTTCCCCACGCGTTGGCAGTCACT
AGTCGCACGTTCGCCGCCCGCGCCCGGGTGCTGTTTACTAGCGAGGCCTGGACGTGACTCTGCA
GCCCTCTTGGAGTAGGCGGACCTCTGCGCGCGGCCTCGCGGGAGCTGTAGTTTTCTATGCCGGC
CTAGCCAACATTCCACTGACTCCTGAGACCCAGAGGGACCAGGAAAGGCGGATTCGACGGGAAA
TTGCCAATAGCAACGAGCGGAGGCGCATGCAGAGTATCAACGCGGGCTTCCAGTCCCTCAAGAC
CCTTATTCCCCACACAGACGGAGAGAAGCTCAGCAAGGCAGCCATTCTCCAGCAGACAGCAGAA
TACATCTTCTCTCTTGAGCAGGAGAAGACTAGACTCCTGCAGCAGAACACGCAGCTCAAGCGTT
TTATCCAGGAGCTGAGTGGCTCATCCCCGAAGCGGCGGCGGGCAGAAGACAAGGACGAGGGCAT
TGGCTCACCCGACATCTGGGAGGATGAGAAAGCTGAGGACCTTAGGAGAGAGATGATCGAGCTG
CGGCAACAACTGGACAAGGAGCGCTCCGTGCGGATGATGCTGGAAGAGCAGGTGCGCTCTCTGG
AGGCCCACATGTACCCGGAAAAACTCAAGGTGATTGCCCAGCAGGTGCAGCTGCAACAGCAGCA
GGAGCAGGTGCGGCTGCTGCACCAGGAGAAGCTGGAGCGGGAACAGCAGCACCTGCGGACCCAG
CTCCTGCCTCCTCCAGCCCCCACCCACCACCCCACCGTGATTGTGCCTGCACCAGCCCCGCCTT
CCTCCCACCACATCAATGTTGTCACTATGGGTCCTTCCTCAGTCATCAACTCTGTCTCTACATC
CCGGCAAAATCTGGACACCATCGTGCAGGCCATCCAGCACATTGAGGGCACCCAGGACAGACAG
GAGCTGGAAGAGGAACAGAGGCGAGCAGTTATCGTGAAGTCTGTCCGCAGCTGCCCGGAGGCCC
ACACCTCTGATACTGCCTCGGACTCCGAGGCCTCGGACAGCGACGCCATGGACCAGAGCCGGGA
GGAGCCTTTGGGGGACGGGGAGCTTCCCTGACCACCCCCCAGCCCTCCTCTCCCTTCTGGGGGT
TAGAGGGGGCCGGGGCAACAACAGGGAGAAACATGGGTGAATGAGGAATTTTTACAAAATTATG
ATGTCATTTGGGTCTCTTTTATGACCTCCTTTTCAATACTGTAAGTCGACCTTTGATCGAAGCC
ACCGGAGCCCAGGTCCCGGGGTTGTGGTGGTGCATAGCACGCGTGGGAGCATGGGGCTCCAGGG
CTGGGCCTCGGCCCTGGGGCCGAGGAAGCTGACACTGAGGTGCCTGGCCTCTCTCGCCAAAAAG
CTTTTTTATTTTTTGTTTTTGTTTTGTTTTTGTTTTTTCCTTCCATTTAAACGTGTTTTTAAGA
ACAGGGAAAATCAAACAAAACCCCAAGTTTTTTGCTTCCTCCCCAGAGCCAGCCCGAGGCCGTC
TGTCTCCACCTCTTCCCTCTATTGGGTTGTCTTTTTCTCTTTTAAGCACTTACATGGGTTGGGG
GTCAGGCTGGGTTGGGGCTTTCTGGGGATCCGGACCCGGGAACAGGGGGACCCGGGAATCCGGG
ATCAACATTGCTTCTCGGTTGGGGTTTGCTGCTGCCATTGTCCCCTCCCCCTCCCCACCTCAGC
AACAGAATTGGCCACTCTCTGCCTCCACCTTCCACCTTCCCCTGCAGGGTTCCTGTCATTGATC
CCAAAAATGTCTTTGTCTCTCTTTTTGTTTTGTTTGTTGTTGGTTTTATTTTGGTTTTGGTTTT
GTATTTTTTTTTTTAATTTTAAATTTTCTTTTTTTCTTTCTTTTTTTACAATTTTGAGGTCTTT
GTGTCCAAGGAGAAGCTATTATATTTTGTTAAGAAAATGGGGGTAGGGAACAAAATACCAAGAG
GCCATTGTGCCTTTGTAAAGAAACAAAATAAAATTTGTACTTTGTTTTTTA

hide sequence

RefSeq Acc Id:

XM_039086267 ⟹ XP_038942195

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	11,507,242 - 11,525,793 (+)	NCBI
mRatBN7.2	10	11,001,979 - 11,019,385 (+)	NCBI

RefSeq Acc Id:

XM_039086268 ⟹ XP_038942196

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	11,515,230 - 11,525,793 (+)	NCBI
mRatBN7.2	10	11,009,543 - 11,019,385 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101737	(Get FASTA)	NCBI Sequence Viewer
	XP_006245881	(Get FASTA)	NCBI Sequence Viewer
	XP_006245884	(Get FASTA)	NCBI Sequence Viewer
	XP_006245885	(Get FASTA)	NCBI Sequence Viewer
	XP_017452854	(Get FASTA)	NCBI Sequence Viewer
	XP_038942195	(Get FASTA)	NCBI Sequence Viewer
	XP_038942196	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL96299	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000006979.5

RefSeq Acc Id:

NP_001101737 ⟸ NM_001108267

- UniProtKB:

D3ZJT6 (UniProtKB/TrEMBL), A6K4S7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEYFMVPTQKVPSLQHFRKTEKEVIGGLCSLANIPLTPETQRDQERRIRREIANSNERRRMQSI
NAGFQSLKTLIPHTDGEKLSKAAILQQTAEYIFSLEQEKTRLLQQNTQLKRFIQELSGSSPKRR
RAEDKDEGIGSPDIWEDEKAEDLRREMIELRQQLDKERSVRMMLEEQVRSLEAHMYPEKLKVIA
QQVQLQQQQEQVRLLHQEKLEREQQHLRTQLLPPPAPTHHPTVIVPAPAPPSSHHINVVTMGPS
SVINSVSTSRQNLDTIVQAIQHIEGTQDRQELEEEQRRAVIVKSVRSCPEAHTSDTASDSEASD
SDAMDQSREEPLGDGELP

hide sequence

RefSeq Acc Id:

XP_006245881 ⟸ XM_006245819

- Peptide Label:

isoform X2

- Sequence:

show sequence

MQSINAGFQSLKTLIPHTDGEKLSKAAILQQTAEYIFSLEQEKTRLLQQNTQLKRFIQELSGSS
PKRRRAEDKDEGIGSPDIWEDEKAEDLRREMIELRQQLDKERSVRMMLEEQVRSLEAHMYPEKL
KVIAQQVQLQQQQEQVRLLHQEKLEREQQHLRTQLLPPPAPTHHPTVIVPAPAPPSSHHINVVT
MGPSSVINSVSTSRQNLDTIVQAIQHIEGTQDRQELEEEQRRAVIVKSVRSCPEAHTSDTASDS
EASDSDAMDQSREEPLGDGELP

hide sequence

RefSeq Acc Id:

XP_006245884 ⟸ XM_006245822

- Peptide Label:

isoform X2

- Sequence:

show sequence

MQSINAGFQSLKTLIPHTDGEKLSKAAILQQTAEYIFSLEQEKTRLLQQNTQLKRFIQELSGSS
PKRRRAEDKDEGIGSPDIWEDEKAEDLRREMIELRQQLDKERSVRMMLEEQVRSLEAHMYPEKL
KVIAQQVQLQQQQEQVRLLHQEKLEREQQHLRTQLLPPPAPTHHPTVIVPAPAPPSSHHINVVT
MGPSSVINSVSTSRQNLDTIVQAIQHIEGTQDRQELEEEQRRAVIVKSVRSCPEAHTSDTASDS
EASDSDAMDQSREEPLGDGELP

hide sequence

RefSeq Acc Id:

XP_006245885 ⟸ XM_006245823

- Peptide Label:

isoform X2

- Sequence:

show sequence

MQSINAGFQSLKTLIPHTDGEKLSKAAILQQTAEYIFSLEQEKTRLLQQNTQLKRFIQELSGSS
PKRRRAEDKDEGIGSPDIWEDEKAEDLRREMIELRQQLDKERSVRMMLEEQVRSLEAHMYPEKL
KVIAQQVQLQQQQEQVRLLHQEKLEREQQHLRTQLLPPPAPTHHPTVIVPAPAPPSSHHINVVT
MGPSSVINSVSTSRQNLDTIVQAIQHIEGTQDRQELEEEQRRAVIVKSVRSCPEAHTSDTASDS
EASDSDAMDQSREEPLGDGELP

hide sequence

RefSeq Acc Id:

XP_017452854 ⟸ XM_017597365

- Peptide Label:

isoform X2

- Sequence:

show sequence

MQSINAGFQSLKTLIPHTDGEKLSKAAILQQTAEYIFSLEQEKTRLLQQNTQLKRFIQELSGSS
PKRRRAEDKDEGIGSPDIWEDEKAEDLRREMIELRQQLDKERSVRMMLEEQVRSLEAHMYPEKL
KVIAQQVQLQQQQEQVRLLHQEKLEREQQHLRTQLLPPPAPTHHPTVIVPAPAPPSSHHINVVT
MGPSSVINSVSTSRQNLDTIVQAIQHIEGTQDRQELEEEQRRAVIVKSVRSCPEAHTSDTASDS
EASDSDAMDQSREEPLGDGELP

hide sequence

Ensembl Acc Id:

ENSRNOP00000006979 ⟸ ENSRNOT00000006979

RefSeq Acc Id:	XP_038942195 ⟸ XM_039086267
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038942196 ⟸ XM_039086268
- Peptide Label:	isoform X2

Protein Domains

bHLH

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZJT6-F1-model_v2	AlphaFold	D3ZJT6	1-338	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308357	AgrOrtholog
BioCyc Gene	G2FUF-26028	BioCyc
Ensembl Genes	ENSRNOG00000005227	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000006979.8	UniProtKB/TrEMBL
Gene3D-CATH	4.10.280.10	UniProtKB/TrEMBL
InterPro	HLH_DNA-bd	UniProtKB/TrEMBL
	HLH_DNA-bd_sf	UniProtKB/TrEMBL
	Max-like/E-box_TFs	UniProtKB/TrEMBL
KEGG Report	rno:360482	UniProtKB/TrEMBL
NCBI Gene	360482	ENTREZGENE
PANTHER	BASIC HELIX-LOOP-HELIX ZIP TRANSCRIPTION FACTOR	UniProtKB/TrEMBL
	TRANSCRIPTION FACTOR AP-4	UniProtKB/TrEMBL
Pfam	HLH	UniProtKB/TrEMBL
PhenoGen	Tfap4	PhenoGen
PROSITE	HLH	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000005227	RatGTEx
SMART	HLH	UniProtKB/TrEMBL
Superfamily-SCOP	HLH_basic	UniProtKB/TrEMBL
UniProt	A6K4S7	ENTREZGENE, UniProtKB/TrEMBL
	D3ZJT6	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-06-09	Tfap4	transcription factor AP-4	Tcfap4	transcription factor AP4	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Tcfap4	transcription factor AP4	Tcfap4_predicted	transcription factor AP4 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Tcfap4_predicted	transcription factor AP4 (predicted)	Tfap4_predicted	transcription factor AP-4 (activating enhancer binding protein 4) (predicted)	Symbol and Name updated	1299863	APPROVED
2005-01-12	Tfap4_predicted	transcription factor AP-4 (activating enhancer binding protein 4) (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar