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Imported Disease Annotations - ClinVarTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | MHC class II deficiency | | ISO | RGD:1604037 | 8554872 | ClinVar Annotator: match by term: MHC class II deficiency | ClinVar | PMID:28492532 | |
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Imported Disease Annotations - ClinVarTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | MHC class II deficiency | | ISO | RGD:1604037 | 8554872 | ClinVar Annotator: match by term: MHC class II deficiency | ClinVar | PMID:28492532 | |
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# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | Chromosomal region 16p13: further evidence of increased predisposition to immune diseases. | Martinez A, etal., Ann Rheum Dis. 2010 Jan;69(1):309-11. Epub . |
3. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
4. | Comprehensive gene review and curation | RGD comprehensive gene curation |
5. | Polymorphisms in CLEC16A and CIITA at 16p13 are associated with primary adrenal insufficiency. | Skinningsrud B, etal., J Clin Endocrinol Metab. 2008 Sep;93(9):3310-7. Epub 2008 Jul 1. |
6. | Variation within the CLEC16A gene shows consistent disease association with both multiple sclerosis and type 1 diabetes in Sardinia. | Zoledziewska M, etal., Genes Immun. 2009 Jan;10(1):15-7. Epub 2008 Oct 23. |
7. | Interrogating the complex role of chromosome 16p13.13 in multiple sclerosis susceptibility: independent genetic signals in the CIITA-CLEC16A-SOCS1 gene complex. | Zuvich RL, etal., Hum Mol Genet. 2011 Sep 1;20(17):3517-24. Epub 2011 Jun 8. |
Clec16a (Rattus norvegicus - Norway rat) |
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CLEC16A (Homo sapiens - human) |
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Clec16a (Mus musculus - house mouse) |
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Clec16a (Chinchilla lanigera - long-tailed chinchilla) |
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CLEC16A (Pan paniscus - bonobo/pygmy chimpanzee) |
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CLEC16A (Canis lupus familiaris - dog) |
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Clec16a (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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CLEC16A (Sus scrofa - pig) |
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CLEC16A (Chlorocebus sabaeus - green monkey) |
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Clec16a (Heterocephalus glaber - naked mole-rat) |
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Variants in Clec16a
582 total Variants ![]() |
The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
RH129826 |
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alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | |||||||||||||
Medium | 1 | 33 | 30 | 14 | 18 | 14 | 6 | 9 | 74 | 35 | 41 | 11 | 6 |
Low | 2 | 10 | 27 | 27 | 1 | 27 | 2 | 2 | 2 | ||||
Below cutoff |
RefSeq Transcripts | NM_001398551 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_008767505 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_008767506 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_008767507 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_008767508 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017597573 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017603952 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039087037 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039087038 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039087039 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039087040 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039087041 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039087042 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039087043 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039087044 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039087045 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039087046 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AC103514 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
CH474017 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JACYVU010000217 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSRNOT00000083982 ⟹ ENSRNOP00000075216 | ||||||||||||
RefSeq Status: | |||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000098168 ⟹ ENSRNOP00000086460 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000101220 ⟹ ENSRNOP00000093525 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000105739 ⟹ ENSRNOP00000083500 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000110515 ⟹ ENSRNOP00000081967 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000120301 ⟹ ENSRNOP00000097322 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_008767505 ⟹ XP_008765727 | ||||||||||||
RefSeq Status: | |||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_008767506 ⟹ XP_008765728 | ||||||||||||
RefSeq Status: | |||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_008767507 ⟹ XP_008765729 | ||||||||||||
RefSeq Status: | |||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_008767508 ⟹ XP_008765730 | ||||||||||||
RefSeq Status: | |||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_017597573 ⟹ XP_017453062 | ||||||||||||
RefSeq Status: | |||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_039087037 ⟹ XP_038942965 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_039087038 ⟹ XP_038942966 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_039087039 ⟹ XP_038942967 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_039087040 ⟹ XP_038942968 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_039087041 ⟹ XP_038942969 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_039087042 ⟹ XP_038942970 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_039087043 ⟹ XP_038942971 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_039087044 ⟹ XP_038942972 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_039087045 ⟹ XP_038942973 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_039087046 ⟹ XP_038942974 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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Protein RefSeqs | NP_001385480 | (Get FASTA) | NCBI Sequence Viewer |
XP_008765727 | (Get FASTA) | NCBI Sequence Viewer | |
XP_008765728 | (Get FASTA) | NCBI Sequence Viewer | |
XP_008765729 | (Get FASTA) | NCBI Sequence Viewer | |
XP_008765730 | (Get FASTA) | NCBI Sequence Viewer | |
XP_017453062 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038942965 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038942966 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038942967 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038942968 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038942969 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038942970 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038942971 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038942972 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038942973 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038942974 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | EDL96212 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | XP_008765730 ⟸ XM_008767508 |
- Peptide Label: | isoform X4 |
- Sequence: |
RefSeq Acc Id: | XP_008765728 ⟸ XM_008767506 |
- Peptide Label: | isoform X2 |
- UniProtKB: | A0A8I5ZW58 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_008765729 ⟸ XM_008767507 |
- Peptide Label: | isoform X3 |
- Sequence: |
RefSeq Acc Id: | XP_008765727 ⟸ XM_008767505 |
- Peptide Label: | isoform X1 |
- UniProtKB: | A0A8I5ZW56 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_017453062 ⟸ XM_017597573 |
- Peptide Label: | isoform X10 |
- Sequence: |
RefSeq Acc Id: | ENSRNOP00000075216 ⟸ ENSRNOT00000083982 |
RefSeq Acc Id: | XP_038942968 ⟸ XM_039087040 |
- Peptide Label: | isoform X8 |
RefSeq Acc Id: | XP_038942965 ⟸ XM_039087037 |
- Peptide Label: | isoform X5 |
RefSeq Acc Id: | XP_038942966 ⟸ XM_039087038 |
- Peptide Label: | isoform X6 |
RefSeq Acc Id: | XP_038942974 ⟸ XM_039087046 |
- Peptide Label: | isoform X15 |
RefSeq Acc Id: | XP_038942967 ⟸ XM_039087039 |
- Peptide Label: | isoform X7 |
RefSeq Acc Id: | XP_038942969 ⟸ XM_039087041 |
- Peptide Label: | isoform X9 |
RefSeq Acc Id: | XP_038942972 ⟸ XM_039087044 |
- Peptide Label: | isoform X13 |
RefSeq Acc Id: | XP_038942971 ⟸ XM_039087043 |
- Peptide Label: | isoform X12 |
RefSeq Acc Id: | XP_038942970 ⟸ XM_039087042 |
- Peptide Label: | isoform X11 |
RefSeq Acc Id: | XP_038942973 ⟸ XM_039087045 |
- Peptide Label: | isoform X14 |
RefSeq Acc Id: | ENSRNOP00000083500 ⟸ ENSRNOT00000105739 |
RefSeq Acc Id: | ENSRNOP00000093525 ⟸ ENSRNOT00000101220 |
RefSeq Acc Id: | ENSRNOP00000081967 ⟸ ENSRNOT00000110515 |
RefSeq Acc Id: | ENSRNOP00000086460 ⟸ ENSRNOT00000098168 |
RefSeq Acc Id: | ENSRNOP00000097322 ⟸ ENSRNOT00000120301 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-A0A0G2KA14-F1-model_v2 | AlphaFold | A0A0G2KA14 | 1-979 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
RGD ID: | 13696955 | ||||||||
Promoter ID: | EPDNEW_R7467 | ||||||||
Type: | initiation region | ||||||||
Name: | Clec16a_1 | ||||||||
Description: | C-type lectin domain containing 16A | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | RGD:1305773 | AgrOrtholog |
BioCyc Gene | G2FUF-26139 | BioCyc |
Ensembl Genes | ENSRNOG00000057378 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Protein | ENSRNOP00000075216.2 | UniProtKB/TrEMBL |
ENSRNOP00000081967 | ENTREZGENE | |
ENSRNOP00000081967.1 | UniProtKB/TrEMBL | |
ENSRNOP00000083500 | ENTREZGENE | |
ENSRNOP00000083500.1 | UniProtKB/TrEMBL | |
ENSRNOP00000086460 | ENTREZGENE | |
ENSRNOP00000086460.1 | UniProtKB/TrEMBL | |
ENSRNOP00000093525 | ENTREZGENE | |
ENSRNOP00000093525.1 | UniProtKB/TrEMBL | |
ENSRNOP00000097322.1 | UniProtKB/TrEMBL | |
Ensembl Transcript | ENSRNOT00000083982.2 | UniProtKB/TrEMBL |
ENSRNOT00000098168 | ENTREZGENE | |
ENSRNOT00000098168.1 | UniProtKB/TrEMBL | |
ENSRNOT00000101220 | ENTREZGENE | |
ENSRNOT00000101220.1 | UniProtKB/TrEMBL | |
ENSRNOT00000105739 | ENTREZGENE | |
ENSRNOT00000105739.1 | UniProtKB/TrEMBL | |
ENSRNOT00000110515 | ENTREZGENE | |
ENSRNOT00000110515.1 | UniProtKB/TrEMBL | |
ENSRNOT00000120301.1 | UniProtKB/TrEMBL | |
InterPro | CLEC16A/TT9 | UniProtKB/TrEMBL |
CLEC16A_C | UniProtKB/TrEMBL | |
Uncharacterised_FPL | UniProtKB/TrEMBL | |
NCBI Gene | 287044 | ENTREZGENE |
PANTHER | PTHR21481 | UniProtKB/TrEMBL |
Pfam | CLEC16A_C | UniProtKB/TrEMBL |
FPL | UniProtKB/TrEMBL | |
PhenoGen | Clec16a | PhenoGen |
UniProt | A0A0G2KA14_RAT | UniProtKB/TrEMBL |
A0A8I5ZW56 | ENTREZGENE, UniProtKB/TrEMBL | |
A0A8I5ZW58 | ENTREZGENE, UniProtKB/TrEMBL | |
A0A8I6A199_RAT | UniProtKB/TrEMBL | |
A0A8I6ASQ2_RAT | UniProtKB/TrEMBL | |
A0A8I6AX58_RAT | UniProtKB/TrEMBL |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2017-03-29 | Clec16a | C-type lectin domain containing 16A | Clec16a | C-type lectin domain family 16, member A | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2008-03-06 | Clec16a | C-type lectin domain family 16, member A | RGD1305773_predicted | similar to CG12753-PA (predicted) | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2005-01-20 | RGD1305773_predicted | similar to CG12753-PA (predicted) | LOC287044_predicted | Symbol and Name status set to approved | 1331353 | APPROVED | |
2005-01-12 | LOC287044_predicted | similar to CG12753-PA (predicted) | Symbol and Name status set to provisional | 70820 | PROVISIONAL |