Clec16a (C-type lectin domain containing 16A) - Rat Genome Database

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Gene: Clec16a (C-type lectin domain containing 16A) Rattus norvegicus
Analyze
Symbol: Clec16a
Name: C-type lectin domain containing 16A
RGD ID: 1305773
Description: Predicted to be involved in cellular response to starvation; negative regulation of macroautophagy; and positive regulation of TORC1 signaling. Predicted to act upstream of or within negative regulation of mitophagy; negative regulation of proteasomal ubiquitin-dependent protein catabolic process; and positive regulation of autophagosome maturation. Predicted to be located in Golgi apparatus; cytosol; and endolysosome membrane. Human ortholog(s) of this gene implicated in Addison's disease; multiple sclerosis; rheumatoid arthritis; and type 1 diabetes mellitus. Orthologous to human CLEC16A (C-type lectin domain containing 16A); INTERACTS WITH 2,3,7,8-Tetrachlorodibenzofuran; bisphenol A; DDT.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: C-type lectin domain family 16, member A; LOC287044; RGD1305773; similar to CG12753-PA
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2104,927,804 - 5,123,749 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl104,928,030 - 5,123,578 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx109,624,383 - 9,820,126 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0109,145,490 - 9,341,240 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0104,783,769 - 4,979,511 (-)NCBIRnor_WKY
Rnor_6.0105,002,196 - 5,196,914 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl105,009,826 - 5,196,892 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0103,827,156 - 4,020,226 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4104,870,719 - 5,069,691 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1104,873,502 - 5,072,213 (-)NCBI
Celera103,948,821 - 4,141,759 (-)NCBICelera
Cytogenetic Map10q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Chromosomal region 16p13: further evidence of increased predisposition to immune diseases. Martinez A, etal., Ann Rheum Dis. 2010 Jan;69(1):309-11. Epub .
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Comprehensive gene review and curation RGD comprehensive gene curation
5. Polymorphisms in CLEC16A and CIITA at 16p13 are associated with primary adrenal insufficiency. Skinningsrud B, etal., J Clin Endocrinol Metab. 2008 Sep;93(9):3310-7. Epub 2008 Jul 1.
6. Variation within the CLEC16A gene shows consistent disease association with both multiple sclerosis and type 1 diabetes in Sardinia. Zoledziewska M, etal., Genes Immun. 2009 Jan;10(1):15-7. Epub 2008 Oct 23.
7. Interrogating the complex role of chromosome 16p13.13 in multiple sclerosis susceptibility: independent genetic signals in the CIITA-CLEC16A-SOCS1 gene complex. Zuvich RL, etal., Hum Mol Genet. 2011 Sep 1;20(17):3517-24. Epub 2011 Jun 8.
Additional References at PubMed
PMID:24949970   PMID:28223137  


Genomics

Comparative Map Data
Clec16a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2104,927,804 - 5,123,749 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl104,928,030 - 5,123,578 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx109,624,383 - 9,820,126 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0109,145,490 - 9,341,240 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0104,783,769 - 4,979,511 (-)NCBIRnor_WKY
Rnor_6.0105,002,196 - 5,196,914 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl105,009,826 - 5,196,892 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0103,827,156 - 4,020,226 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4104,870,719 - 5,069,691 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1104,873,502 - 5,072,213 (-)NCBI
Celera103,948,821 - 4,141,759 (-)NCBICelera
Cytogenetic Map10q11NCBI
CLEC16A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381610,944,564 - 11,182,186 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1610,944,539 - 11,182,186 (+)EnsemblGRCh38hg38GRCh38
GRCh371611,038,421 - 11,276,043 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361610,945,943 - 11,183,539 (+)NCBINCBI36Build 36hg18NCBI36
Celera1611,207,780 - 11,445,485 (+)NCBICelera
Cytogenetic Map16p13.13NCBI
HuRef1610,955,943 - 11,193,891 (+)NCBIHuRef
CHM1_11611,038,266 - 11,275,979 (+)NCBICHM1_1
T2T-CHM13v2.01610,980,535 - 11,218,466 (+)NCBIT2T-CHM13v2.0
Clec16a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391610,363,173 - 10,562,742 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1610,363,203 - 10,562,742 (+)EnsemblGRCm39 Ensembl
GRCm381610,545,309 - 10,744,878 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1610,545,339 - 10,744,878 (+)EnsemblGRCm38mm10GRCm38
MGSCv371610,545,480 - 10,744,964 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361610,458,965 - 10,658,449 (+)NCBIMGSCv36mm8
Celera1611,178,067 - 11,375,698 (+)NCBICelera
Cytogenetic Map16A1NCBI
Clec16a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554427,368,952 - 7,584,703 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554427,369,616 - 7,584,052 (-)NCBIChiLan1.0ChiLan1.0
CLEC16A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11611,109,639 - 11,346,971 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1611,109,869 - 11,343,512 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0169,887,877 - 10,124,500 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
CLEC16A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1631,560,940 - 31,757,100 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl631,562,834 - 31,757,678 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha632,943,444 - 33,139,557 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0631,743,163 - 31,939,531 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl631,743,173 - 31,939,523 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1631,556,477 - 31,752,772 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0631,430,738 - 31,627,044 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0631,855,194 - 32,051,540 (-)NCBIUU_Cfam_GSD_1.0
Clec16a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344111,244,073 - 111,419,122 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365309,089,476 - 9,264,592 (+)EnsemblSpeTri2.0
SpeTri2.0NW_0049365309,089,478 - 9,264,563 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLEC16A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl331,938,135 - 32,158,320 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1331,938,133 - 32,158,343 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2332,799,756 - 32,868,904 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CLEC16A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1510,420,866 - 10,658,370 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl510,420,931 - 10,658,507 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606819,506,544 - 19,745,864 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Clec16a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248248,174,610 - 8,400,723 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248248,174,653 - 8,400,760 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Clec16a
582 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:153
Count of miRNA genes:123
Interacting mature miRNAs:131
Transcripts:ENSRNOT00000003541, ENSRNOT00000032901, ENSRNOT00000061471
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634329Pia15Pristane induced arthritis QTL 153.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10124158324Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135225947Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138328221Rat
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142315980Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
1549898Neuinf3Neuroinflammation QTL 326.4nervous system integrity trait (VT:0010566)MHC Class II RT1A-positive spinal cord ventral horn area to total spinal cord ventral horn area ratio (CMO:0001980)1034063205387112Rat
1576304Schws7Schwannoma susceptibility QTL 70.0115nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)10476552719816042Rat

Markers in Region
RH129826  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2104,928,083 - 4,928,270 (+)MAPPERmRatBN7.2
Rnor_6.0105,002,474 - 5,002,660NCBIRnor6.0
Rnor_5.0103,827,434 - 3,827,620UniSTSRnor5.0
RGSC_v3.4104,871,004 - 4,871,190UniSTSRGSC3.4
Celera103,949,099 - 3,949,285UniSTS
Cytogenetic Map10q11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 33 30 14 18 14 6 9 74 35 41 11 6
Low 2 10 27 27 1 27 2 2 2
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001398551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039087046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC103514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000083982   ⟹   ENSRNOP00000075216
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl104,935,188 - 5,123,578 (-)Ensembl
Rnor_6.0 Ensembl105,009,826 - 5,196,892 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000098168   ⟹   ENSRNOP00000086460
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl104,941,358 - 5,123,578 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000101220   ⟹   ENSRNOP00000093525
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl104,950,411 - 5,123,578 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000105739   ⟹   ENSRNOP00000083500
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl104,928,030 - 5,123,578 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000110515   ⟹   ENSRNOP00000081967
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl104,928,030 - 5,123,578 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000120301   ⟹   ENSRNOP00000097322
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl104,950,544 - 5,123,578 (-)Ensembl
RefSeq Acc Id: XM_008767505   ⟹   XP_008765727
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2104,927,804 - 5,123,747 (-)NCBI
Rnor_6.0105,002,196 - 5,196,914 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008767506   ⟹   XP_008765728
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2104,927,804 - 5,123,747 (-)NCBI
Rnor_6.0105,002,196 - 5,196,914 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008767507   ⟹   XP_008765729
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2104,930,583 - 5,123,747 (-)NCBI
Rnor_6.0105,002,196 - 5,196,914 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008767508   ⟹   XP_008765730
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2104,930,583 - 5,123,747 (-)NCBI
Rnor_6.0105,002,196 - 5,196,914 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017597573   ⟹   XP_017453062
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2104,965,270 - 5,123,748 (-)NCBI
Rnor_6.0105,038,543 - 5,196,914 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039087037   ⟹   XP_038942965
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2104,927,804 - 5,123,748 (-)NCBI
RefSeq Acc Id: XM_039087038   ⟹   XP_038942966
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2104,927,804 - 5,123,748 (-)NCBI
RefSeq Acc Id: XM_039087039   ⟹   XP_038942967
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2104,930,804 - 5,123,748 (-)NCBI
RefSeq Acc Id: XM_039087040   ⟹   XP_038942968
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2104,927,804 - 5,123,748 (-)NCBI
RefSeq Acc Id: XM_039087041   ⟹   XP_038942969
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2104,949,625 - 5,123,748 (-)NCBI
RefSeq Acc Id: XM_039087042   ⟹   XP_038942970
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2105,005,948 - 5,123,749 (-)NCBI
RefSeq Acc Id: XM_039087043   ⟹   XP_038942971
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2105,005,948 - 5,123,749 (-)NCBI
RefSeq Acc Id: XM_039087044   ⟹   XP_038942972
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2104,986,097 - 5,123,749 (-)NCBI
RefSeq Acc Id: XM_039087045   ⟹   XP_038942973
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2105,016,485 - 5,123,748 (-)NCBI
RefSeq Acc Id: XM_039087046   ⟹   XP_038942974
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2104,927,804 - 5,049,130 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_008765730   ⟸   XM_008767508
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_008765728   ⟸   XM_008767506
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZW58 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008765729   ⟸   XM_008767507
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_008765727   ⟸   XM_008767505
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZW56 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453062   ⟸   XM_017597573
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: ENSRNOP00000075216   ⟸   ENSRNOT00000083982
RefSeq Acc Id: XP_038942968   ⟸   XM_039087040
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038942965   ⟸   XM_039087037
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038942966   ⟸   XM_039087038
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038942974   ⟸   XM_039087046
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038942967   ⟸   XM_039087039
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038942969   ⟸   XM_039087041
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038942972   ⟸   XM_039087044
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038942971   ⟸   XM_039087043
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038942970   ⟸   XM_039087042
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038942973   ⟸   XM_039087045
- Peptide Label: isoform X14
RefSeq Acc Id: ENSRNOP00000083500   ⟸   ENSRNOT00000105739
RefSeq Acc Id: ENSRNOP00000093525   ⟸   ENSRNOT00000101220
RefSeq Acc Id: ENSRNOP00000081967   ⟸   ENSRNOT00000110515
RefSeq Acc Id: ENSRNOP00000086460   ⟸   ENSRNOT00000098168
RefSeq Acc Id: ENSRNOP00000097322   ⟸   ENSRNOT00000120301
Protein Domains
CLEC16A_C   FPL

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2KA14-F1-model_v2 AlphaFold A0A0G2KA14 1-979 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696955
Promoter ID:EPDNEW_R7467
Type:initiation region
Name:Clec16a_1
Description:C-type lectin domain containing 16A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0105,196,870 - 5,196,930EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305773 AgrOrtholog
BioCyc Gene G2FUF-26139 BioCyc
Ensembl Genes ENSRNOG00000057378 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000075216.2 UniProtKB/TrEMBL
  ENSRNOP00000081967 ENTREZGENE
  ENSRNOP00000081967.1 UniProtKB/TrEMBL
  ENSRNOP00000083500 ENTREZGENE
  ENSRNOP00000083500.1 UniProtKB/TrEMBL
  ENSRNOP00000086460 ENTREZGENE
  ENSRNOP00000086460.1 UniProtKB/TrEMBL
  ENSRNOP00000093525 ENTREZGENE
  ENSRNOP00000093525.1 UniProtKB/TrEMBL
  ENSRNOP00000097322.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000083982.2 UniProtKB/TrEMBL
  ENSRNOT00000098168 ENTREZGENE
  ENSRNOT00000098168.1 UniProtKB/TrEMBL
  ENSRNOT00000101220 ENTREZGENE
  ENSRNOT00000101220.1 UniProtKB/TrEMBL
  ENSRNOT00000105739 ENTREZGENE
  ENSRNOT00000105739.1 UniProtKB/TrEMBL
  ENSRNOT00000110515 ENTREZGENE
  ENSRNOT00000110515.1 UniProtKB/TrEMBL
  ENSRNOT00000120301.1 UniProtKB/TrEMBL
InterPro CLEC16A/TT9 UniProtKB/TrEMBL
  CLEC16A_C UniProtKB/TrEMBL
  Uncharacterised_FPL UniProtKB/TrEMBL
NCBI Gene 287044 ENTREZGENE
PANTHER PTHR21481 UniProtKB/TrEMBL
Pfam CLEC16A_C UniProtKB/TrEMBL
  FPL UniProtKB/TrEMBL
PhenoGen Clec16a PhenoGen
UniProt A0A0G2KA14_RAT UniProtKB/TrEMBL
  A0A8I5ZW56 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZW58 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A199_RAT UniProtKB/TrEMBL
  A0A8I6ASQ2_RAT UniProtKB/TrEMBL
  A0A8I6AX58_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-03-29 Clec16a  C-type lectin domain containing 16A  Clec16a  C-type lectin domain family 16, member A  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-06 Clec16a  C-type lectin domain family 16, member A  RGD1305773_predicted  similar to CG12753-PA (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 RGD1305773_predicted  similar to CG12753-PA (predicted)  LOC287044_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC287044_predicted  similar to CG12753-PA (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL