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Gene: Crebrf (CREB3 regulatory factor) Rattus norvegicus

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Symbol:

Crebrf

Name:

CREB3 regulatory factor

RGD ID:

1310862

Description:

Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in several processes, including negative regulation of endoplasmic reticulum unfolded protein response; positive regulation of protein catabolic process; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within maternal behavior and positive regulation of prolactin signaling pathway. Predicted to be located in cytoplasm and nuclear body. Predicted to be active in nucleus. Orthologous to human CREBRF (CREB3 regulatory factor); INTERACTS WITH 1,3-dinitrobenzene; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC303016; RGD1310862; similar to adult retina protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CREBRF (CREB3 regulatory factor)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Crebrf (CREB3 regulatory factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Crebrf (CREB3 regulatory factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CREBRF (CREB3 regulatory factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CREBRF (CREB3 regulatory factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Crebrf (CREB3 regulatory factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CREBRF (CREB3 regulatory factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CREBRF (CREB3 regulatory factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Crebrf (CREB3 regulatory factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Crebrf (CREB3 regulatory factor)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	CREBRF (CREB3 regulatory factor)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	crebrf (creb3 regulatory factor)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	REPTOR	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	crebrf	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	16,903,607 - 16,967,450 (-)	NCBI		GRCr8
mRatBN7.2	10	16,399,170 - 16,479,650 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	16,404,596 - 16,461,999 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	21,154,570 - 21,211,940 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	20,643,143 - 20,700,513 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	16,132,647 - 16,190,144 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	16,693,846 - 16,753,162 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	16,694,792 - 16,752,205 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	16,582,414 - 16,661,883 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	16,665,420 - 16,723,929 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	16,668,717 - 16,724,978 (-)	NCBI
Celera	10	16,064,097 - 16,120,536 (-)	NCBI		Celera
Cytogenetic Map	10	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

atrial heart septal defect 7 (ISO)

Atrial Septal Defect with Atrioventricular Conduction Defects (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

(-)-epigallocatechin 3-gallate (ISO)

1,3-dinitrobenzene (EXP)

17beta-estradiol (EXP,ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-bromohexadecanoic acid (ISO)

2-hydroxypropanoic acid (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

5-aza-2'-deoxycytidine (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP,ISO)

aflatoxin B1 (EXP,ISO)

all-trans-retinoic acid (ISO)

amitrole (EXP)

antimycin A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

avobenzone (ISO)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

beta-lapachone (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

chloroprene (EXP)

chlorpyrifos (ISO)

cisplatin (ISO)

cocaine (EXP)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

crocidolite asbestos (ISO)

crotonaldehyde (ISO)

cyclosporin A (ISO)

DDE (ISO)

deguelin (ISO)

dexamethasone (ISO)

diallyl trisulfide (ISO)

Dibutyl phosphate (ISO)

Didecyldimethylammonium (ISO)

dioxygen (ISO)

dorsomorphin (ISO)

doxorubicin (EXP,ISO)

entinostat (ISO)

epoxiconazole (ISO)

ethyl methanesulfonate (ISO)

fenpyroximate (ISO)

fentin chloride (EXP)

fenvalerate (EXP)

fluoranthene (ISO)

formaldehyde (ISO)

gentamycin (EXP)

hydrogen peroxide (ISO)

indometacin (ISO)

iron dichloride (ISO)

leflunomide (ISO)

metformin (EXP)

methidathion (ISO)

methimazole (EXP)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

methylparaben (ISO)

miconazole (ISO)

nickel atom (ISO)

nickel dichloride (ISO)

niclosamide (ISO)

ozone (ISO)

paracetamol (ISO)

paraquat (ISO)

perfluorononanoic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (EXP)

potassium chromate (ISO)

quinolin-8-ol (ISO)

rac-lactic acid (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sirolimus (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tebufenpyrad (ISO)

testosterone (ISO)

tetrachloroethene (ISO)

tetrachloromethane (ISO)

thalidomide (ISO)

thiram (ISO)

titanium dioxide (ISO)

tremolite asbestos (ISO)

trichloroethene (EXP)

triphenyl phosphate (ISO)

tris(2-butoxyethyl) phosphate (ISO)

troglitazone (ISO)

tunicamycin (ISO)

urethane (ISO)

valproic acid (ISO)

vincristine (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

maternal behavior (ISO)

negative regulation of endoplasmic reticulum unfolded protein response (ISO)

negative regulation of nuclear receptor-mediated glucocorticoid signaling pathway (ISO)

negative regulation of transcription by RNA polymerase II (ISO)

positive regulation of prolactin signaling pathway (ISO)

positive regulation of protein catabolic process (ISO)

positive regulation of transcription by RNA polymerase II (ISO)

regulation of transcription by RNA polymerase II (IBA)

response to endoplasmic reticulum stress (ISO)

response to unfolded protein (IEA)

Cellular Component

cytoplasm (ISO)

nuclear body (ISO)

nucleoplasm (ISO)

nucleus (IBA)

Molecular Function

DNA-binding transcription activator activity, RNA polymerase II-specific (ISO)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

protein binding (ISO)

RNA polymerase II transcription regulatory region sequence-specific DNA binding (IBA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:16940180	PMID:18391022	PMID:23071095

Genomics

Comparative Map Data

Crebrf
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	16,903,607 - 16,967,450 (-)	NCBI		GRCr8
mRatBN7.2	10	16,399,170 - 16,479,650 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	16,404,596 - 16,461,999 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	21,154,570 - 21,211,940 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	20,643,143 - 20,700,513 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	16,132,647 - 16,190,144 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	16,693,846 - 16,753,162 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	16,694,792 - 16,752,205 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	16,582,414 - 16,661,883 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	16,665,420 - 16,723,929 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	16,668,717 - 16,724,978 (-)	NCBI
Celera	10	16,064,097 - 16,120,536 (-)	NCBI		Celera
Cytogenetic Map	10	q12	NCBI

CREBRF
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	173,056,352 - 173,139,284 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	173,056,352 - 173,139,284 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	172,483,355 - 172,566,287 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	172,415,976 - 172,496,576 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	5	168,516,821 - 168,599,691 (+)	NCBI		Celera
Cytogenetic Map	5	q35.1	NCBI
HuRef	5	167,577,727 - 167,660,756 (+)	NCBI		HuRef
CHM1_1	5	171,916,093 - 171,998,823 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	5	173,596,456 - 173,679,391 (+)	NCBI		T2T-CHM13v2.0

Crebrf
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	26,918,716 - 26,995,611 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	26,934,624 - 26,995,609 (+)	Ensembl		GRCm39 Ensembl
GRCm38	17	26,715,594 - 26,776,637 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	26,715,650 - 26,776,635 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	26,852,595 - 26,913,573 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	26,443,240 - 26,500,610 (+)	NCBI		MGSCv36	mm8
Celera	17	27,252,264 - 27,313,223 (+)	NCBI		Celera
Cytogenetic Map	17	A3.3	NCBI
cM Map	17	13.5	NCBI

Crebrf
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955408	25,719,187 - 25,774,555 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955408	25,718,523 - 25,769,551 (+)	NCBI	ChiLan1.0	ChiLan1.0

CREBRF
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	168,194,964 - 168,275,816 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	166,334,506 - 166,415,358 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	168,409,668 - 168,492,678 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	175,318,644 - 175,401,330 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	175,318,674 - 175,403,334 (+)	Ensembl	panpan1.1		panPan2

CREBRF
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	39,308,429 - 39,366,031 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	39,313,512 - 39,365,953 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	39,253,882 - 39,311,481 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	39,679,380 - 39,737,014 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	39,682,441 - 39,736,999 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	39,496,142 - 39,553,778 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	39,685,871 - 39,743,521 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	40,194,925 - 40,252,631 (-)	NCBI		UU_Cfam_GSD_1.0

Crebrf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	93,738,135 - 93,775,972 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936609	2,449,601 - 2,498,661 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936609	2,460,379 - 2,498,614 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CREBRF
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	51,150,560 - 51,226,212 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	16	51,146,015 - 51,210,806 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	16	55,459,289 - 55,523,885 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CREBRF
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	75,219,847 - 75,302,641 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	75,219,873 - 75,297,114 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666034	3,307,959 - 3,391,600 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Crebrf
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624733	16,952,319 - 17,017,396 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Crebrf
306 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	157
Count of miRNA genes:	116
Interacting mature miRNAs:	125
Transcripts:	ENSRNOT00000028186
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
6893352	Bw100	Body weight QTL 100	0.33	0.6	body mass (VT:0001259)	body weight (CMO:0000012)	1	15906665	60906665	Rat
9589136	Insul27	Insulin level QTL 27	10.46	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	10	11474010	56474010	Rat
631564	Apr3	Acute phase response QTL 3	3.9		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	10	15275955	60275955	Rat
8662860	Vetf10	Vascular elastic tissue fragility QTL 10			artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	10	6154182	73453136	Rat
2313066	Bss63	Bone structure and strength QTL 63	1.4	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	10	5387014	50387014	Rat
631554	Bp133	Blood pressure QTL 133		0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	743364	63851208	Rat
2313064	Bmd71	Bone mineral density QTL 71	0.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	10	5387014	50387014	Rat
70223	Bp57	Blood pressure QTL 57	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	1	80676123	Rat
1354587	Kidm21	Kidney mass QTL 21	3.3		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	10	15028513	60430477	Rat
6893350	Bw99	Body weight QTL 99	0.87	0.16	body mass (VT:0001259)	body weight (CMO:0000012)	1	15906665	60906665	Rat
634329	Pia15	Pristane induced arthritis QTL 15	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	1	24158324	Rat
1578761	Stresp21	Stress response QTL 21	3.3		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	6375746	51375746	Rat
2293680	Bss40	Bone structure and strength QTL 40	5.66	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	10	1	35225947	Rat
7387235	Uae41	Urinary albumin excretion QTL 41	5.26	0.1874	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	10	1	29497586	Rat
2298544	Neuinf9	Neuroinflammation QTL 9	4.6		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	10	5801990	62146030	Rat
10401803	Kidm50	Kidney mass QTL 50			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	10	418344	45418344	Rat
737820	Alc9	Alcohol consumption QTL 9	2.2		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	10	5144027	19233348	Rat
2313081	Bss64	Bone structure and strength QTL 64	1.3	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	10	5387014	50387014	Rat
631828	Alc5	Alcohol consumption QTL 5	2.4		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	10	5144027	17245662	Rat
634327	Hc4	Hypercalciuria QTL 4	2.4		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	10	1	38328221	Rat
2313095	Bss62	Bone structure and strength QTL 62	1.5	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	5387014	50387014	Rat
1576304	Schws7	Schwannoma susceptibility QTL 7		0.0115	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	10	4765527	19816042	Rat
7411611	Foco17	Food consumption QTL 17	18.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	10	1	42315980	Rat
2301967	Cm73	Cardiac mass QTL 73	4.55		heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	14487011	89062041	Rat
2303118	Mamtr7	Mammary tumor resistance QTL 7		0.003	mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	10	9658275	104670812	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14487011	104060283	Rat
9590268	Scort13	Serum corticosterone level QTL 13	3.26	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	11474010	56474010	Rat
2313104	Bss61	Bone structure and strength QTL 61	0.9	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	10	5387014	50387014	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6357896	96121100	Rat
9590310	Scort19	Serum corticosterone level QTL 19	6.3	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	11474010	56474010	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14487011	107057807	Rat

Markers in Region

RH128582

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	16,405,401 - 16,405,581 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	16,695,598 - 16,695,777	NCBI	Rnor6.0
Rnor_5.0	10	16,587,336 - 16,587,515	UniSTS	Rnor5.0
RGSC_v3.4	10	16,667,172 - 16,667,351	UniSTS	RGSC3.4
Celera	10	16,064,903 - 16,065,082	UniSTS
Cytogenetic Map	10	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001277157	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597237	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085884	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085886	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085887	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085888	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063268953	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063268954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063268955	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC135526	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ624897	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ210728	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ211771	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212510	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212599	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212659	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212820	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212827	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212856	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212878	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212880	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212974	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213089	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213210	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213225	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213391	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213500	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213595	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213641	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213822	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213893	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214034	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214062	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214076	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214128	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214168	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214175	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214414	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214431	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214435	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214830	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ215830	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ216624	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ216705	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ218259	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ219533	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ221538	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ221671	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ221749	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ222055	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ222208	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ222544	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ223261	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ224291	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ224923	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229394	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229536	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229880	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229956	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ230114	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000028186 ⟹ ENSRNOP00000028186

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	16,416,018 - 16,461,999 (-)	Ensembl
Rnor_6.0 Ensembl	10	16,699,072 - 16,731,898 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000079462 ⟹ ENSRNOP00000073583

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	16,404,596 - 16,461,999 (-)	Ensembl
Rnor_6.0 Ensembl	10	16,694,792 - 16,752,205 (-)	Ensembl

RefSeq Acc Id:

NM_001277157 ⟹ NP_001264086

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	16,909,032 - 16,966,430 (-)	NCBI
mRatBN7.2	10	16,404,596 - 16,461,999 (-)	NCBI
Rnor_6.0	10	16,694,792 - 16,752,205 (-)	NCBI
Rnor_5.0	10	16,582,414 - 16,661,883 (-)	NCBI
Celera	10	16,064,097 - 16,120,536 (-)	NCBI

Sequence:

show sequence

CGGCCGCTGCAACGCGGCCGGACCTAGTGCCTGAACCGCTTTCAGCCTCAGAACCGCACATTTA
TTTTTTTAAAAAAGTGGTGACCCAAGCAGTTGAACTGAAGGTATTCTGGGGAAATCTGCTGTTT
ATTGTGAAAATCATCTTTGATCTTGGAATTAAAAGTAAAGCTGGAAAGGAATTTACAAACAAGA
AAAAGAAGAAGTTTGGAATTGGACTCACAGAATCTGGGCTTGGAAATGCCTCAGCCCAGCGTAA
GCGGAATGGATCCGCCTTTTGGGGATGCCTTTCGAAGCCACACCTTTTCAGAACAGACTCTGAT
GAGCACAGATCTCTTAGCCAACAGTTCTGATCCAGATTTCATGTATGAGCTGGATAGAGAGATG
AATTATCAACAGAATCCTAGAGACAACTTCCTTTCTTTGGAAGACTGCAAAGACATTGAAAATC
TGGAGACTTTCACAGATGTCCTGGACAATGAGGATGCTTTGACTTCAAACTGGGAACAGTGGGA
TACATACTGTGAAGACTTAACTAAGTATACCAAACTAACCAGCTGTGACATCTGGGGGACAAAA
GAAGTGGATTACCTGGGTCTTGATGACTTTTCTAGCCCTTACCAAGATGAAGAGGTCATCAGTA
AAACTCCAACCTTGGCCCAGCTCAATAGTGAGGACTCTCAGTCTGTTTCTGATTCCCTTTATTA
TCCTGATTCACTCTTCAGTGTCAAACAAAACCCCTTGCCCCCCTCTTCTTTTCCTAGTAAAAAG
ATCACAAGTAGAGCAGCTGCCCCTGTGTGCTCTTCAAAGATACTTCAGGCTGAGGTCCCATCGT
CAGACTGTGTCCAAAAAGCAAGCAAACCTACTTCAAGCACACAGATCATGGTGAAGACCAACAT
GTATCATAATGAAAAAGTGAATTTTCATGTCGAATGTAAAGACTATGTAAAAAAAGCAAAAGTC
AAGATCAACCCTGTGCAACAGGGCCGGCCCTTGCTGAGCCAGGTGCACATAGATGCGGCAAAGG
AGAACACCTGCTACTGTGGCGCTGTGGTAAAGAGGCAGGAGAAGAGGGGGGTGGAGCCTCACCA
GGGTCATGGCACTCCTGCTTTGCCTTTCAGAGAAACCCAGGAACTATTACTTAGTCCTCTGCCC
CAGCATGGTCCTGGGTTGGTTGCCACAGCAGAGAGTGGCAGCCTTTCTGCCAGCACTTCTGTTT
CAGATTCGTCCCAGAAAAAAGAAGAGCACAATTATTCTCTTTTTGTCTCTGACAACATGAGAGA
ACAGCCAACCAAATACAGTCCTGAAGATGATGAGGATGATGAAGATGATATTGATGATGAGGAC
CATGATGAAGGGTTTGGCAGTGAGCATGAGCTTTCTGAAAATGAAGAGGAGGAAGAAGAGGAAG
AGGATTATGAGGATGACAGAGATGATGATATCAGCGACACATTCTCTGAACCAGGCTATGAAAA
CGACTCTGTAGAGGACTTGAAGGAGATGACTTCCATATCTTCTCGGAAGAGAGGGAAAAGAAGG
TACTTCTGGGAGTATAGTGAGCAGTTGACGCCATCACAGCAAGAGAGGATTCTGAGGCCATCTG
AGTGGAATCGAGACACCTTGCCAAGTAATATGTACCAGAAAAATGGCTTACATCATGGGAAATA
CGCAGTTAAGAAGTCACGGAGAACTGATGTGGAAGACCTGACTCCAAATCCTAAAAAACTACTC
CAGATTGGTAATGAACTACGGAAACTGAATAAGGTGATCAGTGACCTGACTCCAGTTAGTGAGC
TTCCCTTAACAGCGAGGCCAAGGTCAAGGAAAGAAAAAAATAAGCTGGCTTCCAGAGCTTGTAG
GCTGAAGAAGAAAGCCCAGTATGAAGCCAATAAAGTGAAGCTCTGGGGCCTCAACACTGAATAT
GACAATTTATTATTTGTAATCAACTCCATCAAGCAAGACATTGTAAACCGAGTTCAGAATCCAA
GAGAGGAGAGAGGACCCAGCATGGGGCAGAAGCTTGAAATCCTCATTAAAGACACACTCGGTCT
CCCAGTCGCTGGGCAAACCTCAGAATTTGTTAACCAAGTGTTAGGGAAGACTGCTGAAGGCAAC
CCCACTGGAGGCCTTGTAGGACTAAGGATACCAGCATCAAAAGTGTAATCAGCCTCATTGGACC
ACTGGTCAGAAATGTCTGTTTTTTGTCACGTTATCCATTGTAAATTTTCATTCTGTTTTGCATG
TCAATTAGCATTATGTAAACATTTATAATTAGGTTACATTGTTTTGAGAACTTGTAGCATAAGT
GAAGCATGATCCAAAATACTTGATTATTGCATTTTCAGAGCATAAACCAGTGACCCTGCTGCTG
GCATTAGAAAGAAGCTCACACATTAAGTAAATGTGAGTTACAGATTATAAACATTTGTTGAAGC
AGAATGTTTTGGATGAGTGAATATATTAGTATGATGCTAAGTGTTAAGGTGGGTTTATGCTCTG
AACCACACAAAAATACCGAGGAAGCATTTTTTCAAAGTCCATTAGATTGTTTTTAGAATGACTG
CTTTTTGTTCTAATTTTTTACAGCCATTAATCTCACTTGTACATGGCGCACCCAGCACTCACAT
GTGTACCATGTTTAGATGTTTATTTTCAGAACTCAATATGATATATATAAATACATAGATTATA
TATATATATATATATATATATAATTGTCTGTGCAAGTAAGAAAAAAGCATATTCTTTGTGCCTT
GTATTTTGGGGAAACTCTAAAACTGGTAATATTTTGTATGATGAAAACCCTAATGAGGAAAACC
AAGATATATAGATGAGAAAATTGTGGGGTTTAAATGTCTTTTTGTTCCAACTCTTTTTCAGATT
TTTTGAATGTATATAGGACTATGTTGAAATGTAGATATATGCCACAGAGTCTGTGTATTGTATA
AAAAACAAAACAACAAAAACAAACAAAAAAAGATGGCTCTAGAAAACTCCTATTTCGGTACTTG
ACCGGAAGAAATACTTGCACATTATTACGATTGTTTTATTTTTTCTACCAAAGACAAATGCAAC
TGGTATGGCAGACTGCCAGTCTAAGTAAAGTTTTGCACAGCTTACATGATACTGTATGAATGTA
TGAAAAAAAGAGAAAAAATTAAAAGGTCAGGGTTAGGGATCTTACTCAACTGTGAATTTTATTT
CTGTTTGGGTCCAATTATCTACAGAAGGAGCATCCATACATACAAATATTATTTTGCTGTCCTC
TAGTTTGCTTCCATAGTAGATAAGTTGGTGGCCACTTAGGTGTCTTTTATTTCTGCAGTTATTG
TAGGAAATTTTAATATATTTCATATTAGTAAGCTATTGATAAAATAGTTTTTGACTTTGAAAAT
TAAAGTTTATTTAGCTTATTGTAGTATACTTCCACCAAACAACCAAAATACAGATTATTTTTAT
TGTATTATGTATATATATGTAAAGAAAGAAAAGAGCTAAAAATATCTAATACTTTAGTTGCCAC
TTTTCCAATTGATGTATTATTGTGCATGTAATATTTTCAAAGATCAACACAAGCTTAAACAAAT
TTATAAATTTTATATTTTTGTACAGGTATTTTCTTCAAACGTCCATGTGACTTATCTTCTGTAG
TCTCTAGACTTGAGAACATGAACACGTTTAGTTTTAGGTGCTCTTCTTTGCTCACATAAGCGGC
TTTAGTAGTCAGTTCCTAACTGTGCTCAAGCTTTACCTCTTGATGAGAATTCCTCTGTCAAGGC
AGCATTATAAACCTTTGCCACATATCCTTCCATCCTGTCTTTCTTGACTGTTTTATCTCAAATC
TTGTGTTTGGAACTATGAAAACTGGTGACTTCAAAAGTTAAAAACTATCTAGAAGGAAAGCCTG
ACATGTCAGACATAGTTGCTGTTTCTCCACCACCTTTTGATAGAACTAAGGTAGCTGTTCTTGG
TCTGCACAGGAGTTTCTTTCCTTTTCTTTTTCCTCCCCTTCTGTAAGCTATAGCACATGAAGGT
TCAATTAGAGAACACAGTTACAATCCAAAAATGTGTCTTACTTGCCTCTTTGACATCATGAATC
CTAAGAAACCAAGACTTGTCTTGACACGTTAGCTGAAACTGTGACAAGGTTCCTGTGTGTTTGG
TGGAAATGTACCTGTTAGTTCATTCATCCTAACAGATAATAAGCTCACATGGCTCACAGGGTTA
GTAGAATTCAAGGTTTTACTTTTGAGGTGGGAAAAAGCAAACCATAGGTTCACAAATGGAAGTC
TTGAAGGTGTTCCACAGTCTGGCACTTTTGCAGTCAAGGGCATATCGCTTCATGATAGCGATTC
AGTTGGTAAAGTTTATAAACTTGCCCCTTTCTAGCTATCCTGTTAGGAATTCTGGTTTTTTGAT
ACCCTTTTCTTGTCTGCAAACCAGAATTTGATTTTTTTGGTCTTGCATTTCAAAAAACTTTGAA
TCTGTTTAGTAGATTCCATACCCGTGCATTTCAGTGTTTTATATGTACTCCTTAAGTTAAATAG
TTGAAAGCCTTTAAATAGTTGAGCTTTTTAATGTTGACACTTTATTTTGTACCTATTTATATAT
GTATGTATATCTTAGAAAAGCACTTTGTTATAAAATTGCATTTTATATGATTCCTGCCATTTGC
TGCTAAACCTGGGCTGGTCAGAGCGCCGCAGCGATACTTGATCTAGTCAAACCTGGCAGTGAAA
TGTAGAGTGCAAGTTAATCCTCCTGCTGTTGGAGATGACATAGGCAAGCTGTGCAGCTTTACAT
TTTCACCAGGGGACTCTGTGGCATTTAAAACCGTCTAGAAATGGCTGTACTTTTAATGCCAGTA
ATGAACTGCTTCCTCTATTGTCTTTAAAATACCTGTACCTAGTGTGTCACGACAGTTCTCACAA
GCATGTAAAAACCCAGCACTTGTACATGTTGTGTTTTGTAAAATCGTGGCATGTGTTTTTGGGT
GGAAATCATTAGAGTGAGAGCTGTCTAAAGGTTGTCTGTGTTCATACATGGTATACAGATAGCT
CATGAAGTCCAGAACCTTCCCTCAAGTGAAGGCATTGTGAATTCTCCTCAGATAACCCACTGTT
CCAAAAGCAACCAAAACTGACTATAGTACTACTACAGTAAAAAATAATAATGAACCTTCTGCTT
CCTGGTTTCAGATACACTGGATTCTTGTAGTCTGTGCCCACATGAGAGCATGCTGCTGGGCTGC
TCCTGTTAAGGTCATGTGTGAGTTTTTCAAGTCAGTGTGGTTGCTTGCTGTGCTGTACCACGTA
TGGTTCTTGTCCTTTCCACGTCCTTCATTCGAGATTCGGGTGTGGCTTAATCTTGTGCCTTACT
TGTACACTTAAATGAGACATCTTCATTCCTTCCCAATTCCCAAACCTTAACTTTGTCCTTCTTG
TAAGAGAATCAGAACTATTCCAGAAGCATCATGAAGGATTTCAGATGGGTGTGGTTTCATAGTT
CCCTCTCTCTGTATTGTTTTATACTTCTATGAGAGACCAGTTTTGAATGACCTTTGAGTAATCT
TTGCTACATCCCTTCTCTCTGGCTTTTGTGAGGTTGTCCTGCATCTCTATGATGCTTGGCTTCA
TTCGCACCTTAGCGAGAGTCTGCATTTACAGACAGGTGTGTTCACTTCATCTGCTTGAAAGTGA
TTATTTTGTTTTCCAGAACTTTTTAGGAGAAGAATACCCATTTTGTTTGTTTTTTTACAACCGA
TGACAAGTCTCTTTAAAAGAAACTGAAGTACAGTACTTTTGAAATACAATGCTATTGGTATGAA
TTTCTCTTTTATATATAATATTCATACAATTATCTGATGTTTGCCTTCATTAATAAAGCTGTTA
GTTTATTCACCAAAATGTCAAGAATGGATGTGCTTTTTCTTTATTCCATACATTTAAACAATAT
TTTAGCTGCTAAGATTTAGTTAACTTCCTAAGAAATGAATTCAAGTTGCCTTCAGCAAGAATTA
ACAAAACTCATGTCCCCTTTCTTTATATAGTCTTCCTAAAATTCTGTTTAACTACTTTCTAGTT
AATTATGTGACAGAATGTTAGCATCTCTCTAAATCTTGAAACTTGAATTTTGAGAATGCATTGA
ATTTCAGTGTTAATGGAAAAGGTCTCAACTATGTTTGTAGTGGAGTCTTTTGTGGAATACCATT
TCCCATGGAACTGCGACCACTTGCACAACTTTGCACAGAACTGCAGTCTTGTTCTTCCCTGGAT
CGTGACAAATGAGTCTCACACAGTGCCGTAATACTTGTGGATTCTACCGTGATCTTTGTCATCT
TAAATAAGGGCATTATGAGAAAATGATGCCATGTCTTCTTTGTTAATATTTCAAACACAGTGAG
ATGTAACAACAATGTCAGAAGTAGGATGGTGGTTTTGTTTTAAGGAGTAAGCATGTTGG

hide sequence

RefSeq Acc Id:

XM_017597237 ⟹ XP_017452726

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	16,908,086 - 16,967,450 (-)	NCBI
mRatBN7.2	10	16,403,650 - 16,463,029 (-)	NCBI
Rnor_6.0	10	16,693,846 - 16,753,162 (-)	NCBI

Sequence:

show sequence

CTTTAATCTTCTTTTCCTATGCTTAAGAAAATACATTTTCTGTGTGCAGACCAGTAACCCCACA
CCCAGAAGACTAAGACAGGAAGATCCAGAGATAAAGAGAATCCTGGAAACAGGCTGTGATAATT
AGTTCTGAGTCTACAGACAGACTGAATATGGAAGCCTCTGAAAAGAACATCACGCGCGAACGCT
AGCTCGCTGCTTGCCATCCCCAGCGGCCCACGCCCACGCTCAGCAGCAGTCTCCGAGCCCCCGC
TCCGCCCTCTCTTCCTGGTTTTCCCCAGCAACCCGCCCCTCGGGTGTCACGTGACAGGGCGCCA
GCCGGGCTGAGCCCCTGATTGGCCAGACTTCAGGGCGCCTTGCGATTGGCCTGGGGCGGCGGGC
CCCCGCCTCCCTCCTCCTCCTCGCCGCGGCCCACGTGAGGGGGGCGAGTCACGCGATTTCCGGG
AACCCGTCAGGAAGGACATAAACAAAACAAACCGAGGCAGCATGGAGAGGGGCCGCGGCCGCTG
CAACGCGGCCGGACCTAGTGCCTGAACCGCTTTCAGCCTCAGAACCGCACATTTATTTTTTTAA
AAAAGTGGTGACCCAAGCAGTTGAACTGAAGGTATTCTGGGGAAATCTGCTGTTTATTGTGAAA
ATCATCTTTGATCTTGGAATTAAAAGTAAAGCTGGAAAGGAATTTACAAACAAGAAAAAGAAGA
AGTTTGGAATTGGACTCACAGAATCTGGGCTTGGAAATGCCTCAGCCCAGCGTAAGCGGAATGG
ATCCGCCTTTTGGGGATGCCTTTCGAAGCCACACCTTTTCAGAACAGACTCTGATGAGCACAGA
TCTCTTAGCCAACAGTTCTGATCCAGATTTCATGTATGAGCTGGATAGAGAGATGAATTATCAA
CAGAATCCTAGAGACAACTTCCTTTCTTTGGAAGACTGCAAAGACATTGAAAATCTGGAGACTT
TCACAGATGTCCTGGACAATGAGGATGCTTTGACTTCAAACTGGGAACAGTGGGATACATACTG
TGAAGACTTAACTAAGTATACCAAACTAACCAGCTGTGACATCTGGGGGACAAAAGAAGTGGAT
TACCTGGGTCTTGATGACTTTTCTAGCCCTTACCAAGATGAAGAGGTCATCAGTAAAACTCCAA
CCTTGGCCCAGCTCAATAGTGAGGACTCTCAGTCTGTTTCTGATTCCCTTTATTATCCTGATTC
ACTCTTCAGTGTCAAACAAAACCCCTTGCCCCCCTCTTCTTTTCCTAGTAAAAAGATCACAAGT
AGAGCAGCTGCCCCTGTGTGCTCTTCAAAGATACTTCAGGCTGAGGTCCCATCGTCAGACTGTG
TCCAAAAAGCAAGCAAACCTACTTCAAGCACACAGATCATGGTGAAGACCAACATGTATCATAA
TGAAAAAGTGAATTTTCATGTCGAATGTAAAGACTATGTAAAAAAAGCAAAAGTCAAGATCAAC
CCTGTGCAACAGGGCCGGCCCTTGCTGAGCCAGGTGCACATAGATGCGGCAAAGGAGAACACCT
GCTACTGTGGCGCTGTGGTAAAGAGGCAGGAGAAGAGGGGGGTGGAGCCTCACCAGGGTCATGG
CACTCCTGCTTTGCCTTTCAGAGAAACCCAGGAACTATTACTTAGTCCTCTGCCCCAGCATGGT
CCTGGGTTGGTTGCCACAGCAGAGAGTGGCAGCCTTTCTGCCAGCACTTCTGTTTCAGATTCGT
CCCAGAAAAAAGAAGAGCACAATTATTCTCTTTTTGTCTCTGACAACATGAGAGAACAGCCAAC
CAAATACAGTCCTGAAGATGATGAGGATGATGAAGATGATATTGATGATGAGGACCATGATGAA
GGGTTTGGCAGTGAGCATGAGCTTTCTGAAAATGAAGAGGAGGAAGAAGAGGAAGAGGATTATG
AGGATGACAGAGATGATGATATCAGCGACACATTCTCTGAACCAGGCTATGAAAACGACTCTGT
AGAGGACTTGAAGGAGATGACTTCCATATCTTCTCGGAAGAGAGGGAAAAGAAGGTACTTCTGG
GAGTATAGTGAGCAGTTGACGCCATCACAGCAAGAGAGGATTCTGAGGCCATCTGAGTGGAATC
GAGACACCTTGCCAAGTAATATGTACCAGAAAAATGGCTTACATCATGGGAAATACGCAGTTAA
GAAGTCACGGAGAACTGATGTGGAAGACCTGACTCCAAATCCTAAAAAACTACTCCAGATTGGT
AATGAACTACGGAAACTGAATAAGGTGATCAGTGACCTGACTCCAGTTAGTGAGCTTCCCTTAA
CAGCGAGGCCAAGGTCAAGGAAAGAAAAAAATAAGCTGGCTTCCAGAGCTTGTAGGCTGAAGAA
GAAAGCCCAGTATGAAGCCAATAAAGTGAAGCTCTGGGGCCTCAACACTGAATATGACAATTTA
TTATTTGTAATCAACTCCATCAAGCAAGACATTGTAAACCGAGTTCAGAATCCAAGAGAGGAGA
GAGGACCCAGCATGGGGCAGAAGCTTGAAATCCTCATTAAAGACACACTCGGTCTCCCAGTCGC
TGGGCAAACCTCAGAATTTGTTAACCAAGTGTTAGGGAAGACTGCTGAAGGCAACCCCACTGGA
GGCCTTGTAGGACTAAGGATACCAGCATCAAAAGTGTAATCAGCCTCATTGGACCACTGGTCAG
AAATGTCTGTTTTTTGTCACGTTATCCATTGTAAATTTTCATTCTGTTTTGCATGTCAATTAGC
ATTATGTAAACATTTATAATTAGGTTACATTGTTTTGAGAACTTGTAGCATAAGTGAAGCATGA
TCCAAAATACTTGATTATTGCATTTTCAGAGCATAAACCAGTGACCCTGCTGCTGGCATTAGAA
AGAAGCTCACACATTAAGTAAATGTGAGTTACAGATTATAAACATTTGTTGAAGCAGAATGTTT
TGGATGAGTGAATATATTAGTATGATGCTAAGTGTTAAGGTGGGTTTATGCTCTGAACCACACA
AAAATACCGAGGAAGCATTTTTTCAAAGTCCATTAGATTGTTTTTAGAATGACTGCTTTTTGTT
CTAATTTTTTACAGCCATTAATCTCACTTGTACATGGCGCACCCAGCACTCACATGTGTACCAT
GTTTAGATGTTTATTTTCAGAACTCAATATGATATATATAAATACATAGATTATATATATATAT
ATATATATATATAATTGTCTGTGCAAGTAAGAAAAAAGCATATTCTTTGTGCCTTGTATTTTGG
GGAAACTCTAAAACTGGTAATATTTTGTATGATGAAAACCCTAATGAGGAAAACCAAGATATAT
AGATGAGAAAATTGTGGGGTTTAAATGTCTTTTTGTTCCAACTCTTTTTCAGATTTTTTGAATG
TATATAGGACTATGTTGAAATGTAGATATATGCCACAGAGTCTGTGTATTGTATAAAAAACAAA
ACAACAAAAACAAACAAAAAAAGATGGCTCTAGAAAACTCCTATTTCGGTACTTGACCGGAAGA
AATACTTGCACATTATTACGATTGTTTTATTTTTTCTACCAAAGACAAATGCAACTGGTATGGC
AGACTGCCAGTCTAAGTAAAGTTTTGCACAGCTTACATGATACTGTATGAATGTATGAAAAAAA
GAGAAAAAATTAAAAGGTCAGGGTTAGGGATCTTACTCAACTGTGAATTTTATTTCTGTTTGGG
TCCAATTATCTACAGAAGGAGCATCCATACATACAAATATTATTTTGCTGTCCTCTAGTTTGCT
TCCATAGTAGATAAGTTGGTGGCCACTTAGGTGTCTTTTATTTCTGCAGTTATTGTAGGAAATT
TTAATATATTTCATATTAGTAAGCTATTGATAAAATAGTTTTTGACTTTGAAAATTAAAGTTTA
TTTAGCTTATTGTAGTATACTTCCACCAAACAACCAAAATACAGATTATTTTTATTGTATTATG
TATATATATGTAAAGAAAGAAAAGAGCTAAAAATATCTAATACTTTAGTTGCCACTTTTCCAAT
TGATGTATTATTGTGCATGTAATATTTTCAAAGATCAACACAAGCTTAAACAAATTTATAAATT
TTATATTTTTGTACAGGTATTTTCTTCAAACGTCCATGTGACTTATCTTCTGTAGTCTCTAGAC
TTGAGAACATGAACACGTTTAGTTTTAGGTGCTCTTCTTTGCTCACATAAGCGGCTTTAGTAGT
CAGTTCCTAACTGTGCTCAAGCTTTACCTCTTGATGAGAATTCCTCTGTCAAGGCAGCATTATA
AACCTTTGCCACATATCCTTCCATCCTGTCTTTCTTGACTGTTTTATCTCAAATCTTGTGTTTG
GAACTATGAAAACTGGTGACTTCAAAAGTTAAAAACTATCTAGAAGGAAAGCCTGACATGTCAG
ACATAGTTGCTGTTTCTCCACCACCTTTTGATAGAACTAAGGTAGCTGTTCTTGGTCTGCACAG
GAGTTTCTTTCCTTTTCTTTTTCCTCCCCTTCTGTAAGCTATAGCACATGAAGGTTCAATTAGA
GAACACAGTTACAATCCAAAAATGTGTCTTACTTGCCTCTTTGACATCATGAATCCTAAGAAAC
CAAGACTTGTCTTGACACGTTAGCTGAAACTGTGACAAGGTTCCTGTGTGTTTGGTGGAAATGT
ACCTGTTAGTTCATTCATCCTAACAGATAATAAGCTCACATGGCTCACAGGGTTAGTAGAATTC
AAGGTTTTACTTTTGAGGTGGGAAAAAGCAAACCATAGGTTCACAAATGGAAGTCTTGAAGGTG
TTCCACAGTCTGGCACTTTTGCAGTCAAGGGCATATCGCTTCATGATAGCGATTCAGTTGGTAA
AGTTTATAAACTTGCCCCTTTCTAGCTATCCTGTTAGGAATTCTGGTTTTTTGATACCCTTTTC
TTGTCTGCAAACCAGAATTTGATTTTTTTGGTCTTGCATTTCAAAAAACTTTGAATCTGTTTAG
TAGATTCCATACCCGTGCATTTCAGTGTTTTATATGTACTCCTTAAGTTAAATAGTTGAAAGCC
TTTAAATAGTTGAGCTTTTTAATGTTGACACTTTATTTTGTACCTATTTATATATGTATGTATA
TCTTAGAAAAGCACTTTGTTATAAAATTGCATTTTATATGATTCCTGCCATTTGCTGCTAAACC
TGGGCTGGTCAGAGCGCCGCAGCGATACTTGATCTAGTCAAACCTGGCAGTGAAATGTAGAGTG
CAAGTTAATCCTCCTGCTGTTGGAGATGACATAGGCAAGCTGTGCAGCTTTACATTTTCACCAG
GGGACTCTGTGGCATTTAAAACCGTCTAGAAATGGCTGTACTTTTAATGCCAGTAATGAACTGC
TTCCTCTATTGTCTTTAAAATACCTGTACCTAGTGTGTCACGACAGTTCTCACAAGCATGTAAA
AACCCAGCACTTGTACATGTTGTGTTTTGTAAAATCGTGGCATGTGTTTTTGGGTGGAAATCAT
TAGAGTGAGAGCTGTCTAAAGGTTGTCTGTGTTCATACATGGTATACAGATAGCTCATGAAGTC
CAGAACCTTCCCTCAAGTGAAGGCATTGTGAATTCTCCTCAGATAACCCACTGTTCCAAAAGCA
ACCAAAACTGACTATAGTACTACTACAGTAAAAAATAATAATGAACCTTCTGCTTCCTGGTTTC
AGATACACTGGATTCTTGTAGTCTGTGCCCACATGAGAGCATGCTGCTGGGCTGCTCCTGTTAA
GGTCATGTGTGAGTTTTTCAAGTCAGTGTGGTTGCTTGCTGTGCTGTACCACGTATGGTTCTTG
TCCTTTCCACGTCCTTCATTCGAGATTCGGGTGTGGCTTAATCTTGTGCCTTACTTGTACACTT
AAATGAGACATCTTCATTCCTTCCCAATTCCCAAACCTTAACTTTGTCCTTCTTGTAAGAGAAT
CAGAACTATTCCAGAAGCATCATGAAGGATTTCAGATGGGTGTGGTTTCATAGTTCCCTCTCTC
TGTATTGTTTTATACTTCTATGAGAGACCAGTTTTGAATGACCTTTGAGTAATCTTTGCTACAT
CCCTTCTCTCTGGCTTTTGTGAGGTTGTCCTGCATCTCTATGATGCTTGGCTTCATTCGCACCT
TAGCGAGAGTCTGCATTTACAGACAGGTGTGTTCACTTCATCTGCTTGAAAGTGATTATTTTGT
TTTCCAGAACTTTTTAGGAGAAGAATACCCATTTTGTTTGTTTTTTTACAACCGATGACAAGTC
TCTTTAAAAGAAACTGAAGTACAGTACTTTTGAAATACAATGCTATTGGTATGAATTTCTCTTT
TATATATAATATTCATACAATTATCTGATGTTTGCCTTCATTAATAAAGCTGTTAGTTTATTCA
CCAAAATGTCAAGAATGGATGTGCTTTTTCTTTATTCCATACATTTAAACAATATTTTAGCTGC
TAAGATTTAGTTAACTTCCTAAGAAATGAATTCAAGTTGCCTTCAGCAAGAATTAACAAAACTC
ATGTCCCCTTTCTTTATATAGTCTTCCTAAAATTCTGTTTAACTACTTTCTAGTTAATTATGTG
ACAGAATGTTAGCATCTCTCTAAATCTTGAAACTTGAATTTTGAGAATGCATTGAATTTCAGTG
TTAATGGAAAAGGTCTCAACTATGTTTGTAGTGGAGTCTTTTGTGGAATACCATTTCCCATGGA
ACTGCGACCACTTGCACAACTTTGCACAGAACTGCAGTCTTGTTCTTCCCTGGATCGTGACAAA
TGAGTCTCACACAGTGCCGTAATACTTGTGGATTCTACCGTGATCTTTGTCATCTTAAATAAGG
GCATTATGAGAAAATGATGCCATGTCTTCTTTGTTAATATTTCAAACACAGTGAGATGTAACAA
CAATGTCAGAAGTAGGATGGTGGTTTTGTTTTAAGGAGTAAGCATGTTGGAGGAATGTGATGAA
AATGTACTACTGAGAGCTACACACTTCCACAGGCAAGTGGGATTATGTGTTGAAGCATAGTTCC
CATGCTTAGGAAACTGACTGAAATAGAATTTCACCTAGGAGCTGCACTATGCCAAATTGCCATT
TTGTTTGGAAGAGACTTTTGGAGGTGGTAACAAGGCGATGGAACCTCACAGCTACTTCCAAATA
GTATTTTGGAGTTGAAGACTTTGCGGCTAGTAAAGAGCACCCAGGTTTATGTCTCAGTGTGCCA
AGTGTGAACTGGGCTTGCCTCTTTAGTAACAGTGTAAACACCTAGTATAGTTAATCAGTTCCGG
TGCCAGGAGTGGGGCTGATTCTGTGTCTGGCCCTTTGTCCTTTGGGATTTTTGTTGTTGTTGTT
GTTTGTTTGTTTGTTTTCAGAACTAAATAACAAAACTGTATGTGTACTGTATCTGCTTCTCCAC
ATGTTTTACAACACTGTACTCCCACTGCCTGCTATTGTCTTCTTGCCCTAGAGTCTGTCCTATG
GCGTAGCATTTGTGGTTAACAATGACTCCGGAGCTGCCAACACGGAAGGGCAAGAATAAAACAC
ATGTTCCTATGGTTTGGCAGCCTCTTCGAACAGTTGCGCTTAGGATCCTGTATGTGATATGATC
ATAAATACTCCATACTTTTGTTTAGTCCCTGCCCCCAGCTGGAGCTGTGACACGCTATTGGATT
CAGTCTTGTCTCTTGTCTAGAAAGAATTGTTATTTTGTTCACGCATGAGCTGTTTCAAAATGAC
TCAATGTTGGTTAATAGCCGTGCAGTTTTCCTTTTAGGAGAAGGCCATGCACAGGTTACTTTGT
TTTCTGTCACCCTCTACCTGTCAGCACTTGTAGTCAGACACAGAATCATCAGTGTATGCAGCAC
CCTTTGTAATTTAAAATAAAAAATATGAAAAGAAAA

hide sequence

RefSeq Acc Id:

XM_039085884 ⟹ XP_038941812

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	16,908,086 - 16,966,639 (-)	NCBI
mRatBN7.2	10	16,403,650 - 16,462,437 (-)	NCBI

RefSeq Acc Id:

XM_039085886 ⟹ XP_038941814

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	16,913,453 - 16,966,654 (-)	NCBI
mRatBN7.2	10	16,414,735 - 16,479,650 (-)	NCBI

RefSeq Acc Id:

XM_039085887 ⟹ XP_038941815

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	16,908,086 - 16,966,648 (-)	NCBI
mRatBN7.2	10	16,403,650 - 16,462,451 (-)	NCBI

RefSeq Acc Id:

XM_039085888 ⟹ XP_038941816

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	16,903,607 - 16,966,650 (-)	NCBI
mRatBN7.2	10	16,399,170 - 16,462,455 (-)	NCBI

RefSeq Acc Id:

XM_063268953 ⟹ XP_063125023

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	16,908,086 - 16,966,639 (-)	NCBI

RefSeq Acc Id:

XM_063268954 ⟹ XP_063125024

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	16,908,086 - 16,965,696 (-)	NCBI

RefSeq Acc Id:

XM_063268955 ⟹ XP_063125025

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	16,908,086 - 16,966,639 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001264086	(Get FASTA)	NCBI Sequence Viewer
	XP_017452726	(Get FASTA)	NCBI Sequence Viewer
	XP_038941812	(Get FASTA)	NCBI Sequence Viewer
	XP_038941814	(Get FASTA)	NCBI Sequence Viewer
	XP_038941815	(Get FASTA)	NCBI Sequence Viewer
	XP_038941816	(Get FASTA)	NCBI Sequence Viewer
	XP_063125023	(Get FASTA)	NCBI Sequence Viewer
	XP_063125024	(Get FASTA)	NCBI Sequence Viewer
	XP_063125025	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM04043	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000028186.6
	ENSRNOP00000073583.1

RefSeq Acc Id:

NP_001264086 ⟸ NM_001277157

- UniProtKB:

A0A0G2K5W4 (UniProtKB/TrEMBL), A6HDD8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPQPSVSGMDPPFGDAFRSHTFSEQTLMSTDLLANSSDPDFMYELDREMNYQQNPRDNFLSLED
CKDIENLETFTDVLDNEDALTSNWEQWDTYCEDLTKYTKLTSCDIWGTKEVDYLGLDDFSSPYQ
DEEVISKTPTLAQLNSEDSQSVSDSLYYPDSLFSVKQNPLPPSSFPSKKITSRAAAPVCSSKIL
QAEVPSSDCVQKASKPTSSTQIMVKTNMYHNEKVNFHVECKDYVKKAKVKINPVQQGRPLLSQV
HIDAAKENTCYCGAVVKRQEKRGVEPHQGHGTPALPFRETQELLLSPLPQHGPGLVATAESGSL
SASTSVSDSSQKKEEHNYSLFVSDNMREQPTKYSPEDDEDDEDDIDDEDHDEGFGSEHELSENE
EEEEEEEDYEDDRDDDISDTFSEPGYENDSVEDLKEMTSISSRKRGKRRYFWEYSEQLTPSQQE
RILRPSEWNRDTLPSNMYQKNGLHHGKYAVKKSRRTDVEDLTPNPKKLLQIGNELRKLNKVISD
LTPVSELPLTARPRSRKEKNKLASRACRLKKKAQYEANKVKLWGLNTEYDNLLFVINSIKQDIV
NRVQNPREERGPSMGQKLEILIKDTLGLPVAGQTSEFVNQVLGKTAEGNPTGGLVGLRIPASKV

hide sequence

RefSeq Acc Id:	XP_017452726 ⟸ XM_017597237
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K5W4 (UniProtKB/TrEMBL), A6HDD8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPQPSVSGMDPPFGDAFRSHTFSEQTLMSTDLLANSSDPDFMYELDREMNYQQNPRDNFLSLED CKDIENLETFTDVLDNEDALTSNWEQWDTYCEDLTKYTKLTSCDIWGTKEVDYLGLDDFSSPYQ DEEVISKTPTLAQLNSEDSQSVSDSLYYPDSLFSVKQNPLPPSSFPSKKITSRAAAPVCSSKIL QAEVPSSDCVQKASKPTSSTQIMVKTNMYHNEKVNFHVECKDYVKKAKVKINPVQQGRPLLSQV HIDAAKENTCYCGAVVKRQEKRGVEPHQGHGTPALPFRETQELLLSPLPQHGPGLVATAESGSL SASTSVSDSSQKKEEHNYSLFVSDNMREQPTKYSPEDDEDDEDDIDDEDHDEGFGSEHELSENE EEEEEEEDYEDDRDDDISDTFSEPGYENDSVEDLKEMTSISSRKRGKRRYFWEYSEQLTPSQQE RILRPSEWNRDTLPSNMYQKNGLHHGKYAVKKSRRTDVEDLTPNPKKLLQIGNELRKLNKVISD LTPVSELPLTARPRSRKEKNKLASRACRLKKKAQYEANKVKLWGLNTEYDNLLFVINSIKQDIV NRVQNPREERGPSMGQKLEILIKDTLGLPVAGQTSEFVNQVLGKTAEGNPTGGLVGLRIPASKV hide sequence

Ensembl Acc Id:

ENSRNOP00000028186 ⟸ ENSRNOT00000028186

Ensembl Acc Id:

ENSRNOP00000073583 ⟸ ENSRNOT00000079462

RefSeq Acc Id:	XP_038941816 ⟸ XM_039085888
- Peptide Label:	isoform X4
- UniProtKB:	D4A811 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038941815 ⟸ XM_039085887
- Peptide Label:	isoform X3
- UniProtKB:	A6HDD8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038941812 ⟸ XM_039085884
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K5W4 (UniProtKB/TrEMBL), A6HDD8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038941814 ⟸ XM_039085886
- Peptide Label:	isoform X2
- UniProtKB:	D4A811 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125023 ⟸ XM_063268953
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K5W4 (UniProtKB/TrEMBL), A6HDD8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125025 ⟸ XM_063268955
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K5W4 (UniProtKB/TrEMBL), A6HDD8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125024 ⟸ XM_063268954
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K5W4 (UniProtKB/TrEMBL), A6HDD8 (UniProtKB/TrEMBL)

Protein Domains

bZIP

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A811-F1-model_v2	AlphaFold	D4A811	1-640	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13697088

Promoter ID:

EPDNEW_R7612

Type:

initiation region

Name:

Crebrf_1

Description:

CREB3 regulatory factor

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	16,752,274 - 16,752,334	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310862	AgrOrtholog
BioCyc Gene	G2FUF-25649	BioCyc
Ensembl Genes	ENSRNOG00000020769	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000028186.8	UniProtKB/TrEMBL
	ENSRNOT00000079462.2	UniProtKB/TrEMBL
InterPro	bZIP_sf	UniProtKB/TrEMBL
	CREBRF	UniProtKB/TrEMBL
	TF_bZIP	UniProtKB/TrEMBL
KEGG Report	rno:303016	UniProtKB/TrEMBL
NCBI Gene	303016	ENTREZGENE
PANTHER	CREB3 REGULATORY FACTOR	UniProtKB/TrEMBL
	PTHR21552	UniProtKB/TrEMBL
PhenoGen	Crebrf	PhenoGen
PROSITE	BZIP_BASIC	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000020769	RatGTEx
Superfamily-SCOP	SSF57959	UniProtKB/TrEMBL
UniProt	A0A0G2K5W4	ENTREZGENE, UniProtKB/TrEMBL
	A6HDD8	ENTREZGENE, UniProtKB/TrEMBL
	D4A811	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-10-10	Crebrf	CREB3 regulatory factor	RGD1310862	similar to adult retina protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1310862	similar to adult retina protein	RGD1310862_predicted	similar to adult retina protein (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-20	RGD1310862_predicted	similar to adult retina protein (predicted)	LOC303016_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC303016_predicted	similar to adult retina protein (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar