Trim11 (tripartite motif-containing 11) - Rat Genome Database

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Gene: Trim11 (tripartite motif-containing 11) Rattus norvegicus
Analyze
Symbol: Trim11
Name: tripartite motif-containing 11
RGD ID: 1305448
Description: Predicted to enable protein domain specific binding activity; protein-macromolecule adaptor activity; and ubiquitin protein ligase activity. Predicted to be involved in several processes, including defense response to symbiont; negative regulation of AIM2 inflammasome complex assembly; and regulation of viral entry into host cell. Predicted to be located in nucleoplasm. Predicted to be active in cytosol. Orthologous to human TRIM11 (tripartite motif containing 11); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: E3 ubiquitin-protein ligase TRIM11; LOC360534; RING-type E3 ubiquitin transferase TRIM11; tripartite motif protein 11; tripartite motif-containing protein 11
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81044,255,019 - 44,270,711 (+)NCBIGRCr8
mRatBN7.21043,758,299 - 43,771,138 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1043,758,354 - 43,771,138 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1048,453,764 - 48,466,602 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01047,944,106 - 47,956,944 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01043,447,705 - 43,460,544 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01045,322,199 - 45,335,030 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1045,322,248 - 45,335,030 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01045,078,796 - 45,091,446 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41045,270,583 - 45,283,954 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11045,284,255 - 45,294,925 (+)NCBI
Celera1043,024,655 - 43,037,489 (+)NCBICelera
Cytogenetic Map10q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,ISO)
cytosol  (IBA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:11331580   PMID:12477932   PMID:16098226   PMID:18248090   PMID:18574153   PMID:18628401  


Genomics

Comparative Map Data
Trim11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81044,255,019 - 44,270,711 (+)NCBIGRCr8
mRatBN7.21043,758,299 - 43,771,138 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1043,758,354 - 43,771,138 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1048,453,764 - 48,466,602 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01047,944,106 - 47,956,944 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01043,447,705 - 43,460,544 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01045,322,199 - 45,335,030 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1045,322,248 - 45,335,030 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01045,078,796 - 45,091,446 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41045,270,583 - 45,283,954 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11045,284,255 - 45,294,925 (+)NCBI
Celera1043,024,655 - 43,037,489 (+)NCBICelera
Cytogenetic Map10q22NCBI
TRIM11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381228,393,676 - 228,406,835 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1228,393,673 - 228,406,835 (-)EnsemblGRCh38hg38GRCh38
GRCh371228,581,377 - 228,594,536 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361226,648,000 - 226,661,140 (-)NCBINCBI36Build 36hg18NCBI36
Build 341224,888,113 - 224,901,252NCBI
Celera1201,771,344 - 201,784,479 (-)NCBICelera
Cytogenetic Map1q42.13NCBI
HuRef1199,095,985 - 199,109,126 (-)NCBIHuRef
CHM1_11229,853,700 - 229,866,840 (-)NCBICHM1_1
T2T-CHM13v2.01227,582,208 - 227,595,361 (-)NCBIT2T-CHM13v2.0
Trim11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391158,865,054 - 58,882,288 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1158,868,919 - 58,882,284 (+)EnsemblGRCm39 Ensembl
GRCm381158,973,726 - 58,991,462 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1158,978,093 - 58,991,458 (+)EnsemblGRCm38mm10GRCm38
MGSCv371158,791,618 - 58,804,960 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361158,794,311 - 58,807,653 (+)NCBIMGSCv36mm8
Celera1163,744,428 - 63,757,877 (+)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1136.4NCBI
Trim11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955581114,750 - 125,143 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955581114,750 - 123,410 (+)NCBIChiLan1.0ChiLan1.0
TRIM11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2121,199,280 - 21,212,698 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1121,137,294 - 21,150,898 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01203,795,924 - 203,809,703 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11209,006,979 - 209,019,994 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1209,006,979 - 209,019,994 (-)Ensemblpanpan1.1panPan2
TRIM11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.114640,375 - 647,427 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha14511,392 - 518,438 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.014356,380 - 363,429 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.114543,563 - 550,609 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.014304,219 - 311,263 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.014313,608 - 320,656 (+)NCBIUU_Cfam_GSD_1.0
Trim11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721387,076,008 - 87,085,815 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049371358,990 - 21,913 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493713511,350 - 21,235 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRIM11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl251,733,181 - 51,743,254 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1251,729,333 - 51,743,256 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TRIM11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1251,322,817 - 1,336,535 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl251,323,528 - 1,335,504 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660551,201,555 - 1,215,589 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trim11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249371,100,297 - 1,109,027 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249371,100,297 - 1,109,017 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Trim11
73 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:135
Count of miRNA genes:97
Interacting mature miRNAs:120
Transcripts:ENSRNOT00000047268
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61441Btemp1Thermal response to stress QTL 14body temperature trait (VT:0005535)core body temperature (CMO:0001036)103539245763642539Rat
9589136Insul27Insulin level QTL 2710.460.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)101147401056474010Rat
1578779Tcas10Tongue tumor susceptibility QTL 103.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)103129743976297439Rat
631564Apr3Acute phase response QTL 33.9blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)101527595560275955Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
631552Vetf2Vascular elastic tissue fragility QTL 24.50.0002aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)104114263386142633Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
631557Bp136Blood pressure QTL 1360.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)103063205375632053Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042045676104670812Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10637574651375746Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)10580199062146030Rat
61332Eau3Experimental allergic uveoretinitis QTL 30.004uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)103449055945579777Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat
61463Bp12Blood pressure QTL 126.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104133325886333258Rat
1554317Bmd4Bone mineral density QTL 49.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)101981604299406971Rat
1598852Anxrr19Anxiety related response QTL 195.07body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)101816784163167841Rat
1581497Esta1Estrogen-induced thymic atrophy QTL 1thymus mass (VT:0004954)thymus wet weight (CMO:0000855)102132980561345413Rat
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
724527Bp148Blood pressure QTL 1480.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102845313673453136Rat
1358897Stresp6Stress response QTL 64.170.022blood norepinephrine amount (VT:0005663)plasma norepinephrine level (CMO:0001010)103539226764155584Rat
1331762Rf40Renal function QTL 403.873kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)102929950464155584Rat
2300171Bmd58Bone mineral density QTL 584.90.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)102694462871944628Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101448701189062041Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)14232313287323132Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
9590310Scort19Serum corticosterone level QTL 196.30.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
10402859Bp381Blood pressure QTL 3810.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102760646872606468Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
70198BpQTLcluster9Blood pressure QTL cluster 92.94arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)104232313287323132Rat
6893352Bw100Body weight QTL 1000.330.6body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
724556Pur2Proteinuria QTL 25.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)102242750090627625Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10538701450387014Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10538701450387014Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
1354587Kidm21Kidney mass QTL 213.3kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)101502851360430477Rat
6893350Bw99Body weight QTL 990.870.16body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
2317043Aia7Adjuvant induced arthritis QTL 73.82joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)103756507982565079Rat
70224Eae3Experimental allergic encephalomyelitis QTL 34.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)102652195761345413Rat
2317042Aia20Adjuvant induced arthritis QTL 203.38joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)103756507982565079Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10538701450387014Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)1029299504107211142Rat
2313087Bmd80Bone mineral density QTL 803.20.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)101960648364606483Rat
1354614Hpcl1Hepatic cholesterol level QTL 13.3liver cholesterol amount (VT:0010498)liver cholesterol level (CMO:0001597)103539226751793994Rat
631532Cm50Cardiac mass QTL 506.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)101790711351786432Rat
1576319Cia29Collagen induced arthritis QTL 29joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103397392178973921Rat
8552805Bw145Body weight QTL 1452.2body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)104194452678307017Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1600371Mcs21Mammary carcinoma susceptibility QTL 213mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)102887565052200160Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1040035094102359817Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
9590268Scort13Serum corticosterone level QTL 133.260.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
1576311Pia26Pristane induced arthritis QTL 26joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103122402675632053Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
6893342Cm78Cardiac mass QTL 780.10.88heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)104287676679813922Rat
2292441Bp308Blood pressure QTL 308arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102760646872606468Rat
2313055Bw96Body weight QTL 963.60.0001body mass (VT:0001259)body weight (CMO:0000012)101960648364606483Rat
631542Bp82Blood pressure QTL 826.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102652195798952741Rat

Markers in Region
RH137147  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21043,770,875 - 43,771,056 (+)MAPPERmRatBN7.2
Rnor_6.01045,334,768 - 45,334,948NCBIRnor6.0
Rnor_5.01045,091,182 - 45,091,362UniSTSRnor5.0
RGSC_v3.41045,283,692 - 45,283,872UniSTSRGSC3.4
Celera1043,037,227 - 43,037,407UniSTS
RH 3.4 Map10493.4UniSTS
Cytogenetic Map10q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000047268   ⟹   ENSRNOP00000039974
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1043,758,354 - 43,771,138 (+)Ensembl
Rnor_6.0 Ensembl1045,322,248 - 45,335,030 (+)Ensembl
RefSeq Acc Id: NM_001399546   ⟹   NP_001386475
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81044,257,874 - 44,270,711 (+)NCBI
mRatBN7.21043,758,299 - 43,771,138 (+)NCBI
RefSeq Acc Id: XM_039086305   ⟹   XP_038942233
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81044,255,019 - 44,266,936 (+)NCBI
mRatBN7.21043,758,361 - 43,763,174 (+)NCBI
Ensembl Acc Id: ENSRNOP00000039974   ⟸   ENSRNOT00000047268
RefSeq Acc Id: XP_038942233   ⟸   XM_039086305
- Peptide Label: isoform X1
RefSeq Acc Id: NP_001386475   ⟸   NM_001399546
- UniProtKB: B1H278 (UniProtKB/Swiss-Prot)
Protein Domains
B30.2/SPRY

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B1H278-F1-model_v2 AlphaFold B1H278 1-467 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13697229
Promoter ID:EPDNEW_R7753
Type:multiple initiation site
Name:Trim11_1
Description:tripartite motif-containing 11
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01045,322,209 - 45,322,269EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305448 AgrOrtholog
BioCyc Gene G2FUF-24916 BioCyc
Ensembl Genes ENSRNOG00000002915 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00055029897 UniProtKB/Swiss-Prot
  ENSRNOG00060031055 UniProtKB/Swiss-Prot
  ENSRNOG00065008272 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000047268.6 UniProtKB/Swiss-Prot
  ENSRNOT00055051810 UniProtKB/Swiss-Prot
  ENSRNOT00060053923 UniProtKB/Swiss-Prot
  ENSRNOT00065013114 UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.120.920 UniProtKB/Swiss-Prot
  3.30.40.10 UniProtKB/Swiss-Prot
  Classic Zinc Finger UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7446534 IMAGE-MGC_LOAD
InterPro B30.2/SPRY UniProtKB/Swiss-Prot
  B30.2/SPRY_sf UniProtKB/Swiss-Prot
  Butyrophylin_SPRY UniProtKB/Swiss-Prot
  ConA-like_dom_sf UniProtKB/Swiss-Prot
  PRY UniProtKB/Swiss-Prot
  SPRY_dom UniProtKB/Swiss-Prot
  TRIM/RBCC UniProtKB/Swiss-Prot
  Znf_B-box UniProtKB/Swiss-Prot
  Znf_RING UniProtKB/Swiss-Prot
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot
  Znf_RING_CS UniProtKB/Swiss-Prot
MGC_CLONE MGC:188334 IMAGE-MGC_LOAD
NCBI Gene 360534 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIM UniProtKB/Swiss-Prot
  E3 UBIQUITIN-PROTEIN LIGASE TRIM11-RELATED UniProtKB/Swiss-Prot
Pfam PRY UniProtKB/Swiss-Prot
  SPRY UniProtKB/Swiss-Prot
  zf-B_box UniProtKB/Swiss-Prot
  zf-C3HC4_4 UniProtKB/Swiss-Prot
PhenoGen Trim11 PhenoGen
PRINTS BUTYPHLNCDUF UniProtKB/Swiss-Prot
PROSITE B302_SPRY UniProtKB/Swiss-Prot
  ZF_BBOX UniProtKB/Swiss-Prot
  ZF_RING_1 UniProtKB/Swiss-Prot
  ZF_RING_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000002915 RatGTEx
  ENSRNOG00055029897 RatGTEx
  ENSRNOG00060031055 RatGTEx
  ENSRNOG00065008272 RatGTEx
SMART BBOX UniProtKB/Swiss-Prot
  PRY UniProtKB/Swiss-Prot
  RING UniProtKB/Swiss-Prot
  SPRY UniProtKB/Swiss-Prot
Superfamily-SCOP B-box zinc-binding domain UniProtKB/Swiss-Prot
  RING/U-box UniProtKB/Swiss-Prot
  SSF49899 UniProtKB/Swiss-Prot
UniProt B1H278 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-31 Trim11  tripartite motif-containing 11  Trim11_predicted  tripartite motif protein 11 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-12 Trim11_predicted  tripartite motif protein 11 (predicted)      Symbol and Name status set to approved 70820 APPROVED