Mir3547 (microRNA 3547) - Rat Genome Database

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Gene: Mir3547 (microRNA 3547) Rattus norvegicus
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Symbol: Mir3547
Name: microRNA 3547
RGD ID: 4888561
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq]
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: rno-mir-3547
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81014,766,769 - 14,766,878 (-)NCBIGRCr8
mRatBN7.21014,262,270 - 14,262,379 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1014,262,270 - 14,262,379 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1019,003,009 - 19,003,118 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01018,491,871 - 18,491,980 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01013,991,086 - 13,991,195 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01014,603,134 - 14,603,243 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1014,603,134 - 14,603,243 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01014,420,724 - 14,420,833 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1013,934,695 - 13,934,804 (-)NCBICelera
Cytogenetic Map10q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


PMID:16381832   PMID:20403161  



.

Predicted Targets
Summary Value
Count of predictions:3200
Count of gene targets:2628
Count of transcripts:2842
Interacting mature miRNAs:rno-miR-3547
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 25 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
9589136Insul27Insulin level QTL 2710.460.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)101147401056474010Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10538701450387014Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10538701450387014Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
634329Pia15Pristane induced arthritis QTL 153.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10124158324Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10637574651375746Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135225947Rat
7387235Uae41Urinary albumin excretion QTL 415.260.1874urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)10129497586Rat

1 to 10 of 25 rows



ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
2 5 3 3 3 3 2 10 3


RefSeq Transcripts NR_037321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC094421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000071303
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1014,262,270 - 14,262,379 (-)Ensembl
Rnor_6.0 Ensembl1014,603,134 - 14,603,243 (-)Ensembl
RefSeq Acc Id: NR_037321
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81014,766,769 - 14,766,878 (-)NCBI
mRatBN7.21014,262,270 - 14,262,379 (-)NCBI
Rnor_6.01014,603,134 - 14,603,243 (-)NCBI
Rnor_5.01014,420,724 - 14,420,833 (-)NCBI
Celera1013,934,695 - 13,934,804 (-)NCBI
Sequence:

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



Database
Acc Id
Source(s)
BioCyc Gene G2FUF-25793 BioCyc
Ensembl Genes ENSRNOG00000047763 Ensembl
miRBase MI0015401 ENTREZGENE
NCBI Gene 100526614 ENTREZGENE
PhenoGen Mir3547 PhenoGen
RatGTEx ENSRNOG00000047763 RatGTEx
RNAcentral URS000075A595 RNACentral
  URS000075BDBB RNACentral


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-04-09 Mir3547  microRNA 3547  Mir3547  microRNA mir-3547  Name updated 61478 APPROVED
2010-11-23 Mir3547  microRNA mir-3547      Symbol and Name status set to provisional 70820 PROVISIONAL