Rab26 (RAB26, member RAS oncogene family) - Rat Genome Database

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Gene: Rab26 (RAB26, member RAS oncogene family) Rattus norvegicus
Analyze
Symbol: Rab26
Name: RAB26, member RAS oncogene family
RGD ID: 620890
Description: Enables GTP binding activity. Involved in exocrine system development and regulation of exocytosis. Is intrinsic component of plasma membrane. Orthologous to human RAB26 (RAB26, member RAS oncogene family); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: ras-related protein Rab-26
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21013,553,395 - 13,558,063 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1013,553,395 - 13,558,030 (-)Ensembl
Rnor_6.01013,894,271 - 13,898,578 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1013,893,290 - 13,898,855 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01013,711,256 - 13,715,563 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41013,780,502 - 13,784,809 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11013,780,501 - 13,783,719 (-)NCBI
Celera1013,233,628 - 13,237,935 (-)NCBICelera
Cytogenetic Map10q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function
GMP binding  (ISO,ISS)
GTP binding  (IDA,ISO,TAS)
GTPase activity  (TAS)
protein binding  (ISO)

References

Additional References at PubMed
PMID:15489334   PMID:20038531   PMID:23105096   PMID:25643395   PMID:29084947  


Genomics

Comparative Map Data
Rab26
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21013,553,395 - 13,558,063 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1013,553,395 - 13,558,030 (-)Ensembl
Rnor_6.01013,894,271 - 13,898,578 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1013,893,290 - 13,898,855 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01013,711,256 - 13,715,563 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41013,780,502 - 13,784,809 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11013,780,501 - 13,783,719 (-)NCBI
Celera1013,233,628 - 13,237,935 (-)NCBICelera
Cytogenetic Map10q12NCBI
RAB26
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl162,140,803 - 2,154,165 (+)EnsemblGRCh38hg38GRCh38
GRCh38162,148,144 - 2,154,165 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37162,198,145 - 2,204,166 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36162,138,652 - 2,144,142 (+)NCBINCBI36hg18NCBI36
Build 34162,138,651 - 2,144,141NCBI
Celera162,413,043 - 2,418,558 (+)NCBI
Cytogenetic Map16p13.3NCBI
HuRef162,124,981 - 2,130,406 (+)NCBIHuRef
CHM1_1162,198,600 - 2,204,114 (+)NCBICHM1_1
Rab26
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391724,748,028 - 24,752,721 (-)NCBIGRCm39mm39
GRCm39 Ensembl1724,746,215 - 24,753,184 (-)Ensembl
GRCm381724,529,054 - 24,533,747 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1724,527,241 - 24,534,210 (-)EnsemblGRCm38mm10GRCm38
MGSCv371724,665,999 - 24,670,692 (-)NCBIGRCm37mm9NCBIm37
MGSCv361724,256,654 - 24,261,489 (-)NCBImm8
Celera1725,045,266 - 25,049,953 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
Rab26
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544215,114,333 - 15,120,123 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544215,114,333 - 15,119,481 (-)NCBIChiLan1.0ChiLan1.0
LOC100977490
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1162,250,286 - 2,254,513 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0161,006,847 - 1,012,263 (+)NCBIMhudiblu_PPA_v0panPan3
RAB26
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1638,806,750 - 38,812,541 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl638,807,487 - 38,812,379 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha640,045,910 - 40,051,589 (-)NCBI
ROS_Cfam_1.0639,115,273 - 39,120,961 (-)NCBI
UMICH_Zoey_3.1638,800,104 - 38,805,782 (-)NCBI
UNSW_CanFamBas_1.0638,772,414 - 38,778,087 (-)NCBI
UU_Cfam_GSD_1.0639,251,172 - 39,256,854 (-)NCBI
Rab26
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344104,807,158 - 104,813,110 (+)NCBI
SpeTri2.0NW_0049366941,896,360 - 1,902,272 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB26
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl339,831,982 - 39,837,440 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1339,831,981 - 39,837,510 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2342,344,040 - 42,349,574 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RAB26
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.152,041,871 - 2,049,623 (+)NCBI
ChlSab1.1 Ensembl52,043,829 - 2,049,836 (+)Ensembl
Vero_WHO_p1.0NW_02366606829,012,370 - 29,018,651 (-)NCBI
Rab26
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624913101,788 - 107,267 (-)NCBI

Position Markers
RH130595  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21013,553,457 - 13,553,669 (+)MAPPERmRatBN7.2
Rnor_6.01013,894,331 - 13,894,542NCBIRnor6.0
Rnor_5.01013,711,316 - 13,711,527UniSTSRnor5.0
RGSC_v3.41013,780,562 - 13,780,773UniSTSRGSC3.4
Celera1013,233,688 - 13,233,899UniSTS
Cytogenetic Map10q12UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634329Pia15Pristane induced arthritis QTL 153.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10124158324Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135225947Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138328221Rat
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142315980Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
1576304Schws7Schwannoma susceptibility QTL 70.0115nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)10476552719816042Rat
631828Alc5Alcohol consumption QTL 52.4consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10514402717245662Rat
737820Alc9Alcohol consumption QTL 92.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10514402719233348Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)cortical volumetric bone mineral density (CMO:0001730)10538701450387014Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10538701450387014Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10538701450387014Rat
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)10580199062146030Rat
631660Hcar1Hepatocarcinoma resistance QTL 13.40.0001liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)10615418215990232Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10637574651375746Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
9590310Scort19Serum corticosterone level QTL 196.30.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
9590268Scort13Serum corticosterone level QTL 133.260.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
9589136Insul27Insulin level QTL 2710.460.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)101147401056474010Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:205
Count of miRNA genes:153
Interacting mature miRNAs:173
Transcripts:ENSRNOT00000004249
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 1 39
Low 3 40 43 28 18 28 5 5 35 35 41 11 5
Below cutoff 3 13 13 13 3 6 3

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_133580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005489681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005489682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005489683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005489684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005489685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC093937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC103090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC061984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U18771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000004249   ⟹   ENSRNOP00000004249
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1013,553,395 - 13,558,030 (-)Ensembl
Rnor_6.0 Ensembl1013,893,290 - 13,898,855 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000097378   ⟹   ENSRNOP00000083203
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1013,553,395 - 13,558,030 (-)Ensembl
RefSeq Acc Id: NM_133580   ⟹   NP_598264
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21013,553,395 - 13,558,030 (-)NCBI
Rnor_6.01013,894,271 - 13,898,578 (-)NCBI
Rnor_5.01013,711,256 - 13,715,563 (-)NCBI
RGSC_v3.41013,780,502 - 13,784,809 (-)RGD
Celera1013,233,628 - 13,237,935 (-)RGD
Sequence:
RefSeq Acc Id: XM_039085122   ⟹   XP_038941050
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21013,553,395 - 13,558,062 (-)NCBI
RefSeq Acc Id: XM_039085123   ⟹   XP_038941051
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21013,553,395 - 13,558,063 (-)NCBI
RefSeq Acc Id: XM_039085124   ⟹   XP_038941052
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21013,553,395 - 13,558,062 (-)NCBI
RefSeq Acc Id: XM_039085125   ⟹   XP_038941053
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21013,553,395 - 13,558,062 (-)NCBI
RefSeq Acc Id: XM_039085126   ⟹   XP_038941054
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21013,553,395 - 13,558,063 (-)NCBI
RefSeq Acc Id: XM_039085127   ⟹   XP_038941055
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21013,553,395 - 13,558,063 (-)NCBI
RefSeq Acc Id: XM_039085128   ⟹   XP_038941056
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21013,553,395 - 13,558,062 (-)NCBI
RefSeq Acc Id: XM_039085129   ⟹   XP_038941057
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21013,553,395 - 13,558,062 (-)NCBI
RefSeq Acc Id: XM_039085130   ⟹   XP_038941058
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21013,553,395 - 13,558,059 (-)NCBI
RefSeq Acc Id: XM_039085131   ⟹   XP_038941059
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21013,553,395 - 13,558,063 (-)NCBI
RefSeq Acc Id: XM_039085132   ⟹   XP_038941060
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21013,553,395 - 13,558,062 (-)NCBI
RefSeq Acc Id: XM_039085133   ⟹   XP_038941061
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21013,553,395 - 13,558,062 (-)NCBI
RefSeq Acc Id: XM_039085134   ⟹   XP_038941062
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21013,553,395 - 13,558,060 (-)NCBI
RefSeq Acc Id: XM_039085135   ⟹   XP_038941063
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21013,553,395 - 13,558,062 (-)NCBI
RefSeq Acc Id: XM_039085136   ⟹   XP_038941064
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21013,553,395 - 13,558,059 (-)NCBI
RefSeq Acc Id: XM_039085137   ⟹   XP_038941065
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21013,553,395 - 13,558,059 (-)NCBI
RefSeq Acc Id: XM_039085138   ⟹   XP_038941066
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21013,553,395 - 13,558,058 (-)NCBI
RefSeq Acc Id: XM_039085139   ⟹   XP_038941067
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21013,553,395 - 13,558,061 (-)NCBI
RefSeq Acc Id: XM_039085140   ⟹   XP_038941068
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21013,553,395 - 13,558,061 (-)NCBI
RefSeq Acc Id: XM_039085141   ⟹   XP_038941069
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21013,554,164 - 13,558,063 (-)NCBI
RefSeq Acc Id: XM_039085142   ⟹   XP_038941070
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21013,553,395 - 13,558,062 (-)NCBI
RefSeq Acc Id: XM_039085143   ⟹   XP_038941071
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21013,554,167 - 13,558,060 (-)NCBI
RefSeq Acc Id: XM_039085144   ⟹   XP_038941072
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21013,554,166 - 13,558,058 (-)NCBI
RefSeq Acc Id: XM_039085145   ⟹   XP_038941073
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21013,554,187 - 13,558,060 (-)NCBI
RefSeq Acc Id: XM_039085146   ⟹   XP_038941074
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21013,553,395 - 13,558,057 (-)NCBI
RefSeq Acc Id: XM_039085147   ⟹   XP_038941075
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21013,553,834 - 13,558,060 (-)NCBI
RefSeq Acc Id: XR_005489681
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21013,554,074 - 13,558,063 (-)NCBI
RefSeq Acc Id: XR_005489682
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21013,554,072 - 13,558,060 (-)NCBI
RefSeq Acc Id: XR_005489683
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21013,554,093 - 13,558,060 (-)NCBI
RefSeq Acc Id: XR_005489684
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21013,554,106 - 13,558,060 (-)NCBI
RefSeq Acc Id: XR_005489685
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21013,554,074 - 13,558,060 (-)NCBI
Protein Sequences
Protein RefSeqs NP_598264 (Get FASTA)   NCBI Sequence Viewer  
  XP_038941050 (Get FASTA)   NCBI Sequence Viewer  
  XP_038941051 (Get FASTA)   NCBI Sequence Viewer  
  XP_038941052 (Get FASTA)   NCBI Sequence Viewer  
  XP_038941053 (Get FASTA)   NCBI Sequence Viewer  
  XP_038941054 (Get FASTA)   NCBI Sequence Viewer  
  XP_038941055 (Get FASTA)   NCBI Sequence Viewer  
  XP_038941056 (Get FASTA)   NCBI Sequence Viewer  
  XP_038941057 (Get FASTA)   NCBI Sequence Viewer  
  XP_038941058 (Get FASTA)   NCBI Sequence Viewer  
  XP_038941059 (Get FASTA)   NCBI Sequence Viewer  
  XP_038941060 (Get FASTA)   NCBI Sequence Viewer  
  XP_038941061 (Get FASTA)   NCBI Sequence Viewer  
  XP_038941062 (Get FASTA)   NCBI Sequence Viewer  
  XP_038941063 (Get FASTA)   NCBI Sequence Viewer  
  XP_038941064 (Get FASTA)   NCBI Sequence Viewer  
  XP_038941065 (Get FASTA)   NCBI Sequence Viewer  
  XP_038941066 (Get FASTA)   NCBI Sequence Viewer  
  XP_038941067 (Get FASTA)   NCBI Sequence Viewer  
  XP_038941068 (Get FASTA)   NCBI Sequence Viewer  
  XP_038941069 (Get FASTA)   NCBI Sequence Viewer  
  XP_038941070 (Get FASTA)   NCBI Sequence Viewer  
  XP_038941071 (Get FASTA)   NCBI Sequence Viewer  
  XP_038941072 (Get FASTA)   NCBI Sequence Viewer  
  XP_038941073 (Get FASTA)   NCBI Sequence Viewer  
  XP_038941074 (Get FASTA)   NCBI Sequence Viewer  
  XP_038941075 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA69955 (Get FASTA)   NCBI Sequence Viewer  
  AAH61984 (Get FASTA)   NCBI Sequence Viewer  
  EDM03844 (Get FASTA)   NCBI Sequence Viewer  
  P51156 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_598264   ⟸   NM_133580
- Sequence:
RefSeq Acc Id: ENSRNOP00000004249   ⟸   ENSRNOT00000004249
RefSeq Acc Id: XP_038941059   ⟸   XM_039085131
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038941054   ⟸   XM_039085126
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038941055   ⟸   XM_039085127
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038941051   ⟸   XM_039085123
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038941056   ⟸   XM_039085128
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038941053   ⟸   XM_039085125
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038941050   ⟸   XM_039085122
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038941060   ⟸   XM_039085132
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038941052   ⟸   XM_039085124
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038941070   ⟸   XM_039085142
- Peptide Label: isoform X21
RefSeq Acc Id: XP_038941063   ⟸   XM_039085135
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038941061   ⟸   XM_039085133
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038941057   ⟸   XM_039085129
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038941068   ⟸   XM_039085140
- Peptide Label: isoform X19
RefSeq Acc Id: XP_038941067   ⟸   XM_039085139
- Peptide Label: isoform X18
RefSeq Acc Id: XP_038941062   ⟸   XM_039085134
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038941065   ⟸   XM_039085137
- Peptide Label: isoform X16
RefSeq Acc Id: XP_038941064   ⟸   XM_039085136
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038941058   ⟸   XM_039085130
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038941066   ⟸   XM_039085138
- Peptide Label: isoform X17
RefSeq Acc Id: XP_038941074   ⟸   XM_039085146
- Peptide Label: isoform X25
RefSeq Acc Id: XP_038941075   ⟸   XM_039085147
- Peptide Label: isoform X26
RefSeq Acc Id: XP_038941069   ⟸   XM_039085141
- Peptide Label: isoform X20
RefSeq Acc Id: XP_038941072   ⟸   XM_039085144
- Peptide Label: isoform X23
RefSeq Acc Id: XP_038941071   ⟸   XM_039085143
- Peptide Label: isoform X22
RefSeq Acc Id: XP_038941073   ⟸   XM_039085145
- Peptide Label: isoform X24
RefSeq Acc Id: ENSRNOP00000083203   ⟸   ENSRNOT00000097378

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13697015
Promoter ID:EPDNEW_R7540
Type:single initiation site
Name:Rab26_1
Description:RAB26, member RAS oncogene family
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01013,898,900 - 13,898,960EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN-Lx/CubMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BUF/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
DA/OlaHsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
F344/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FXLE16/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/FarMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
HXB10/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEXF10A/StmMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
M520/NRrrcMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MWF/Hsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/OlalpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/RijCrl (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620890 AgrOrtholog
Ensembl Genes ENSRNOG00000042086 Ensembl, UniProtKB/Swiss-Prot
Ensembl Protein ENSRNOP00000004249 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000004249 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:5599180 IMAGE-MGC_LOAD
InterPro P-loop_NTPase UniProtKB/Swiss-Prot
  Small_GTP-bd_dom UniProtKB/Swiss-Prot
  Small_GTPase UniProtKB/Swiss-Prot
KEGG Report rno:171111 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72316 IMAGE-MGC_LOAD
NCBI Gene 171111 ENTREZGENE
Pfam Ras UniProtKB/Swiss-Prot
PhenoGen Rab26 PhenoGen
PROSITE RAB UniProtKB/Swiss-Prot
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot
TIGRFAMs small_GTP UniProtKB/Swiss-Prot
UniProt P51156 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q6P6W7 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-08-06 Rab26  RAB26, member RAS oncogene family      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_expression expressed in pancreas, kidney, brain, submandibular gland, and lung 633756
gene_product member of the Rab family of low molecular weight GTP-binding (LMWG) proteins 633756