Stc2 (stanniocalcin 2) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Stc2 (stanniocalcin 2) Rattus norvegicus
Analyze
Symbol: Stc2
Name: stanniocalcin 2
RGD ID: 621777
Description: Predicted to enable enzyme binding activity; heme binding activity; and protein homodimerization activity. Involved in several processes, including decidualization; embryo implantation; and response to vitamin D. Acts upstream of or within cellular calcium ion homeostasis. Predicted to be located in Golgi apparatus; endoplasmic reticulum; and perinuclear region of cytoplasm. Predicted to be active in extracellular space. Orthologous to human STC2 (stanniocalcin 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl; ammonium chloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: stanniocalcin-2; STC-2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21016,251,046 - 16,260,815 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1016,250,853 - 16,262,973 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1020,999,993 - 21,009,760 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01020,488,943 - 20,498,710 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01015,978,545 - 15,988,328 (+)NCBIRnor_WKY
Rnor_6.01016,542,909 - 16,552,675 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1016,542,882 - 16,553,295 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01016,432,189 - 16,441,955 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41016,514,603 - 16,524,369 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11016,515,651 - 16,525,418 (+)NCBI
Celera1015,912,872 - 15,922,638 (+)NCBICelera
Cytogenetic Map10q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(E)-thiamethoxam  (ISO)
(S)-nicotine  (ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (ISO)
1,2-dimethylhydrazine  (ISO)
1-nitropyrene  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP,ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-azacytidine  (ISO)
8-Br-cAMP  (ISO)
acrylamide  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
arachidonic acid  (ISO)
aristolochic acid  (ISO)
arsenous acid  (ISO)
avobenzone  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
butanal  (ISO)
cadmium atom  (ISO)
caffeine  (ISO)
calcitriol  (ISO)
cannabidiol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chloropicrin  (ISO)
chloroquine  (EXP)
chlorpyrifos  (ISO)
choline  (ISO)
cisplatin  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP)
Didecyldimethylammonium  (ISO)
diethylstilbestrol  (EXP)
dioxygen  (ISO)
diphenylcyclopropenone  (ISO)
diquat  (ISO)
disodium selenite  (ISO)
disulfiram  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP,ISO)
enniatin  (ISO)
entinostat  (ISO)
ethanol  (ISO)
flutamide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
genistein  (ISO)
gentamycin  (EXP)
GW 4064  (ISO)
hydrogen peroxide  (ISO)
hydroquinone  (ISO)
Indeno[1,2,3-cd]pyrene  (ISO)
L-methionine  (ISO)
lamivudine  (ISO)
lead diacetate  (ISO)
leflunomide  (ISO)
lipopolysaccharide  (ISO)
lithium atom  (ISO)
lithium hydride  (ISO)
mercury dibromide  (ISO)
methamphetamine  (EXP)
methylmercury chloride  (ISO)
miconazole  (ISO)
mitomycin C  (ISO)
Muraglitazar  (EXP)
N-methyl-4-phenylpyridinium  (EXP,ISO)
nickel atom  (ISO)
nickel dichloride  (ISO)
nicotine  (ISO)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (EXP)
perfluorononanoic acid  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
picene  (ISO)
piroxicam  (ISO)
potassium chromate  (ISO)
progesterone  (ISO)
prothioconazole  (ISO)
quercetin  (ISO)
raloxifene  (ISO)
rotenone  (EXP)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
serpentine asbestos  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
succimer  (ISO)
sulindac  (ISO)
sulindac sulfide  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
Tesaglitazar  (EXP)
testosterone  (EXP,ISO)
tetrachloroethene  (ISO)
thapsigargin  (ISO)
thiamethoxam  (ISO)
thimerosal  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
triacsin C  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
trimellitic anhydride  (ISO)
troglitazone  (EXP,ISO)
trovafloxacin  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vincaleukoblastine  (ISO)
vorinostat  (ISO)
XL147  (ISO)
zidovudine  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)
zoledronic acid  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Regulation by 1alpha,25-dihydroxyvitamin D(3) of expression of stanniocalcin messages in the rat kidney and ovary. Honda S, etal., FEBS Lett 1999 Oct 1;459(1):119-22.
4. Characterization of stanniocalcin 2, a novel target of the mammalian unfolded protein response with cytoprotective properties. Ito D, etal., Mol Cell Biol. 2004 Nov;24(21):9456-69.
5. Differential gene signatures in rat mammary tumors induced by DMBA and those induced by fractionated gamma radiation. Lee HJ, etal., Radiat Res. 2008 Nov;170(5):579-90.
6. Identification of a stanniocalcin paralog, stanniocalcin-2, in fish and the paracrine actions of stanniocalcin-2 in the mammalian ovary. Luo CW, etal., Endocrinology. 2005 Jan;146(1):469-76. Epub 2004 Oct 14.
7. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
8. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
9. GOA pipeline RGD automated data pipeline
10. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. Comprehensive gene review and curation RGD comprehensive gene curation
13. Comprehensive Molecular Analyses of a Macrophage-Related Gene Signature With Regard to Prognosis, Immune Features, and Biomarkers for Immunotherapy in Hepatocellular Carcinoma Based on WGCNA and the LASSO Algorithm. Wang T, etal., Front Immunol. 2022 May 27;13:843408. doi: 10.3389/fimmu.2022.843408. eCollection 2022.
14. Expression and regulation of stanniocalcin 1 and 2 in rat uterus during embryo implantation and decidualization. Xiao LJ, etal., Reproduction. 2006 Jun;131(6):1137-49.
15. Stanniocalcin 2 is a negative modulator of store-operated calcium entry. Zeiger W, etal., Mol Cell Biol. 2011 Sep;31(18):3710-22. doi: 10.1128/MCB.05140-11. Epub 2011 Jul 11.
Additional References at PubMed
PMID:9753616   PMID:16502470   PMID:18258678   PMID:22285620   PMID:22503972  


Genomics

Comparative Map Data
Stc2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21016,251,046 - 16,260,815 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1016,250,853 - 16,262,973 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1020,999,993 - 21,009,760 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01020,488,943 - 20,498,710 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01015,978,545 - 15,988,328 (+)NCBIRnor_WKY
Rnor_6.01016,542,909 - 16,552,675 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1016,542,882 - 16,553,295 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01016,432,189 - 16,441,955 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41016,514,603 - 16,524,369 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11016,515,651 - 16,525,418 (+)NCBI
Celera1015,912,872 - 15,922,638 (+)NCBICelera
Cytogenetic Map10q12NCBI
STC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385173,314,723 - 173,328,414 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl5173,314,723 - 173,328,447 (-)EnsemblGRCh38hg38GRCh38
GRCh375172,741,726 - 172,755,417 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365172,674,332 - 172,689,112 (-)NCBINCBI36Build 36hg18NCBI36
Build 345172,660,711 - 172,687,936NCBI
Celera5168,774,827 - 168,789,607 (-)NCBICelera
Cytogenetic Map5q35.2NCBI
HuRef5167,836,956 - 167,851,740 (-)NCBIHuRef
CHM1_15172,174,113 - 172,188,892 (-)NCBICHM1_1
T2T-CHM13v2.05173,854,781 - 173,868,472 (-)NCBIT2T-CHM13v2.0
Stc2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391131,309,441 - 31,320,061 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1131,307,307 - 31,320,074 (-)EnsemblGRCm39 Ensembl
GRCm381131,359,441 - 31,370,061 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1131,357,307 - 31,370,074 (-)EnsemblGRCm38mm10GRCm38
MGSCv371131,259,441 - 31,270,061 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361131,259,441 - 31,270,061 (-)NCBIMGSCv36mm8
Celera1133,778,331 - 33,788,980 (-)NCBICelera
Cytogenetic Map11A4NCBI
Stc2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540825,934,932 - 25,949,399 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540825,937,174 - 25,950,221 (-)NCBIChiLan1.0ChiLan1.0
STC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.15175,575,412 - 175,587,832 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5175,575,419 - 175,587,832 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v05168,668,851 - 168,681,274 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
STC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1439,151,951 - 39,165,514 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl439,152,503 - 39,162,343 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha439,097,951 - 39,109,709 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0439,523,070 - 39,537,223 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl439,524,206 - 39,534,846 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1439,341,084 - 39,355,222 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0439,529,915 - 39,543,843 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0440,038,732 - 40,052,874 (+)NCBIUU_Cfam_GSD_1.0
Stc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721393,596,596 - 93,607,949 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366092,319,111 - 2,332,988 (+)EnsemblSpeTri2.0
SpeTri2.0NW_0049366092,319,546 - 2,331,049 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1650,989,433 - 51,004,481 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11650,989,676 - 51,001,412 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21655,330,021 - 55,341,757 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12375,475,020 - 75,489,727 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2375,475,022 - 75,488,678 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660343,118,074 - 3,132,787 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stc2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473316,773,644 - 16,785,214 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473316,773,422 - 16,787,475 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Stc2
22 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:88
Count of miRNA genes:78
Interacting mature miRNAs:81
Transcripts:ENSRNOT00000028146
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)10580199062146030Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
1576304Schws7Schwannoma susceptibility QTL 70.0115nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)10476552719816042Rat
737820Alc9Alcohol consumption QTL 92.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10514402719233348Rat
631564Apr3Acute phase response QTL 33.9blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)101527595560275955Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135225947Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138328221Rat
634329Pia15Pristane induced arthritis QTL 153.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10124158324Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10637574651375746Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101448701189062041Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)cortical volumetric bone mineral density (CMO:0001730)10538701450387014Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10538701450387014Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10538701450387014Rat
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
1354587Kidm21Kidney mass QTL 213.3kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)101502851360430477Rat
631828Alc5Alcohol consumption QTL 52.4consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10514402717245662Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
6893350Bw99Body weight QTL 990.870.16body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
6893352Bw100Body weight QTL 1000.330.6body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
9590310Scort19Serum corticosterone level QTL 196.30.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
9590268Scort13Serum corticosterone level QTL 133.260.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142315980Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
9589136Insul27Insulin level QTL 2710.460.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)101147401056474010Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 10 2 5 8
Low 2 41 21 10 4 10 8 9 68 30 30 11 8
Below cutoff 1 35 30 5 30 6 3

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000028146   ⟹   ENSRNOP00000028146
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1016,250,853 - 16,262,973 (+)Ensembl
Rnor_6.0 Ensembl1016,542,882 - 16,553,295 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000103133   ⟹   ENSRNOP00000093400
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1016,251,052 - 16,262,702 (+)Ensembl
RefSeq Acc Id: NM_022230   ⟹   NP_071566
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21016,251,046 - 16,260,815 (+)NCBI
Rnor_6.01016,542,909 - 16,552,675 (+)NCBI
Rnor_5.01016,432,189 - 16,441,955 (+)NCBI
RGSC_v3.41016,514,603 - 16,524,369 (+)RGD
Celera1015,912,872 - 15,922,638 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_071566 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAA85251 (Get FASTA)   NCBI Sequence Viewer  
  EDM04038 (Get FASTA)   NCBI Sequence Viewer  
  Q9R0K8 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_071566   ⟸   NM_022230
- Peptide Label: precursor
- UniProtKB: Q9R0K8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000028146   ⟸   ENSRNOT00000028146
RefSeq Acc Id: ENSRNOP00000093400   ⟸   ENSRNOT00000103133

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9R0K8-F1-model_v2 AlphaFold Q9R0K8 1-296 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13697086
Promoter ID:EPDNEW_R7610
Type:initiation region
Name:Stc2_1
Description:stanniocalcin 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01016,542,915 - 16,542,975EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621777 AgrOrtholog
BioCyc Gene G2FUF-25652 BioCyc
Ensembl Genes ENSRNOG00000020729 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000028146 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000093400.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000028146 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000103133.1 UniProtKB/TrEMBL
InterPro Stanniocalcin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:63878 UniProtKB/Swiss-Prot
NCBI Gene 63878 ENTREZGENE
PANTHER PTHR11245 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Stanniocalcin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Stc2 PhenoGen
UniProt A0A8I6AKX3_RAT UniProtKB/TrEMBL
  Q9R0K8 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Stc2  stanniocalcin 2    stanniocalcin-2  Name updated 1299863 APPROVED
2002-08-07 Stc2  stanniocalcin-2      Symbol and Name status set to provisional 70820 PROVISIONAL