Gene: Smim23 (small integral membrane protein 23) Rattus norvegicus |
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 Analyze |
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Symbol: |
Smim23 |
Name: |
small integral membrane protein 23 |
RGD ID: |
1306625 |
Description: |
Orthologous to human SMIM23 (small integral membrane protein 23); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; acrylamide; bisphenol A. |
Type: |
protein-coding
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RefSeq Status: |
PROVISIONAL |
Previously known as: |
hypothetical protein LOC360508; LOC360508; RGD1306625; uncharacterized protein LOC360508 |
RGD Orthologs |
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Alliance Orthologs |
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More Info |
more info ...
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More Info |
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Latest Assembly: |
GRCr8 - GRCr8 Assembly |
Position: |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 10 | 17,907,716 - 17,911,350 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 10 | 17,403,456 - 17,407,091 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 10 | 17,403,456 - 17,407,168 (-) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 10 | 22,152,365 - 22,155,864 (-) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 10 | 21,640,953 - 21,644,452 (-) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 10 | 17,129,211 - 17,132,845 (-) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 10 | 17,717,599 - 17,721,233 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 10 | 17,717,599 - 17,721,233 (-) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 10 | 17,605,598 - 17,609,232 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 10 | 17,687,792 - 17,691,426 (-) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 10 | 17,688,839 - 17,692,414 (-) | NCBI | | | | | Celera | 10 | 17,047,052 - 17,050,557 (-) | NCBI | | Celera | | | Cytogenetic Map | 10 | q12 | NCBI | | | | |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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References
Genomics
Comparative Map Data
Smim23 (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 10 | 17,907,716 - 17,911,350 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 10 | 17,403,456 - 17,407,091 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 10 | 17,403,456 - 17,407,168 (-) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 10 | 22,152,365 - 22,155,864 (-) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 10 | 21,640,953 - 21,644,452 (-) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 10 | 17,129,211 - 17,132,845 (-) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 10 | 17,717,599 - 17,721,233 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 10 | 17,717,599 - 17,721,233 (-) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 10 | 17,605,598 - 17,609,232 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 10 | 17,687,792 - 17,691,426 (-) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 10 | 17,688,839 - 17,692,414 (-) | NCBI | | | | | Celera | 10 | 17,047,052 - 17,050,557 (-) | NCBI | | Celera | | | Cytogenetic Map | 10 | q12 | NCBI | | | | |
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SMIM23 (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 5 | 171,772,637 - 171,791,136 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 5 | 171,782,432 - 171,796,126 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 5 | 171,212,821 - 171,218,140 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 5 | 171,145,481 - 171,166,221 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Celera | 5 | 167,162,218 - 167,266,076 (+) | NCBI | | Celera | | | Cytogenetic Map | 5 | q35.1 | NCBI | | | | | HuRef | 5 | 166,309,194 - 166,314,503 (+) | NCBI | | HuRef | | | CHM1_1 | 5 | 170,645,301 - 170,650,600 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 5 | 172,312,952 - 172,331,444 (+) | NCBI | | T2T-CHM13v2.0 | | |
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Smim23 (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 11 | 32,770,376 - 32,774,594 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 11 | 32,768,529 - 32,774,605 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 11 | 32,820,376 - 32,824,594 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 11 | 32,818,529 - 32,824,605 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 11 | 32,720,376 - 32,724,594 (-) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 11 | 32,718,529 - 32,724,573 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 11 | 35,239,451 - 35,243,685 (-) | NCBI | | Celera | | | Cytogenetic Map | 11 | A4 | NCBI | | | | | cM Map | 11 | 19.11 | NCBI | | | | |
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Smim23 (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955408 | 24,626,470 - 24,635,327 (+) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955408 | 24,626,468 - 24,633,678 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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SMIM23 (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 4 | 166,920,229 - 166,927,164 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 5 | 165,059,779 - 165,066,703 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 5 | 167,131,772 - 167,137,236 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 5 | 174,048,837 - 174,054,098 (+) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 5 | 174,048,837 - 174,057,589 (+) | Ensembl | panpan1.1 | | panPan2 | |
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SMIM23 (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 4 | 40,427,841 - 40,434,357 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 4 | 40,428,036 - 40,434,359 (-) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 4 | 40,376,734 - 40,383,249 (-) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 4 | 40,803,162 - 40,809,683 (-) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 4 | 40,803,357 - 40,809,588 (-) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 4 | 40,618,344 - 40,624,858 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 4 | 40,808,669 - 40,815,178 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 4 | 41,318,857 - 41,325,364 (-) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Smim23 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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HiC_Itri_2 | NW_024407213 | 94,676,110 - 94,683,159 (-) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936609 | 3,398,891 - 3,405,769 (-) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936609 | 3,398,891 - 3,405,769 (-) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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SMIM23 (Sus scrofa - pig) |
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SMIM23 (Chlorocebus sabaeus - green monkey) |
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Smim23 (Heterocephalus glaber - naked mole-rat) |
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miRNA Target Status
Predicted Target Of
Count of predictions: | 71 | Count of miRNA genes: | 66 | Interacting mature miRNAs: | 71 | Transcripts: | ENSRNOT00000031337 | Prediction methods: | Microtar, Rnahybrid | Result types: | miRGate_prediction | |