Ebf1 (EBF transcription factor 1)

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Gene: Ebf1 (EBF transcription factor 1) Rattus norvegicus

Analyze

Symbol:

Ebf1

Name:

EBF transcription factor 1

RGD ID:

620953

Description:

Enables C2H2 zinc finger domain binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within positive regulation of transcription, DNA-templated. Predicted to be located in nucleus. Orthologous to human EBF1 (EBF transcription factor 1); PARTICIPATES IN DNA modification pathway; INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 17beta-estradiol 3-benzoate.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

early B-cell factor (olfactory neuronal transcription factor 1); early B-cell factor 1; Ebf; o/E-1; OE-1; olf-1; Olf1; olfactory neuronal transcription factor; transcription factor COE1

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	EBF1 (EBF transcription factor 1)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Ebf1 (early B cell factor 1)	HGNC	Treefam, OrthoMCL, NCBI, HomoloGene, Inparanoid, Panther, PhylomeDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Ebf1 (EBF transcription factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	EBF1 (EBF transcription factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	EBF1 (EBF transcription factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ebf1 (EBF transcription factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	EBF1 (EBF transcription factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	EBF1 (EBF transcription factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ebf1 (EBF transcription factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	EBF3 (EBF transcription factor 3)	HGNC	EggNOG, OrthoDB
Alliance orthologs ³
Mus musculus (house mouse):	Ebf1 (early B cell factor 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Homo sapiens (human):	EBF1 (EBF transcription factor 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	ebf1a (EBF transcription factor 1a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)
Danio rerio (zebrafish):	ebf1b (EBF transcription factor 1b)	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	kn	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	unc-3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	10	29,095,858 - 29,489,142 (+)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	10	29,099,933 - 29,487,665 (+)	Ensembl
Rnor_6.0	10	23,654,849 - 24,051,627 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	23,661,013 - 24,050,209 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	23,518,314 - 23,912,932 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	29,770,047 - 30,163,200 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	10	30,132,189 - 30,164,249 (+)	NCBI
Celera	10	28,580,160 - 28,966,044 (+)	NCBI		Celera
Cytogenetic Map	10	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

adult respiratory distress syndrome (ISO)

follicular lymphoma (ISO)

lipodystrophy (ISS)

Neoplastic Cell Transformation (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1-dichloroethene (ISO)

17alpha-ethynylestradiol (EXP,ISO)

17beta-estradiol (EXP,ISO)

17beta-estradiol 3-benzoate (EXP)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2-butoxyethanol (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

aflatoxin B1 (ISO)

aflatoxin B2 (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

arsenite(3-) (ISO)

atrazine (EXP,ISO)

benzo[a]pyrene (EXP,ISO)

bis(2-chloroethyl) sulfide (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

buta-1,3-diene (ISO)

butanal (ISO)

carbon nanotube (ISO)

chloroprene (ISO)

chlorpyrifos (ISO)

choline (ISO)

cisplatin (ISO)

copper atom (EXP)

copper(0) (EXP)

crocidolite asbestos (ISO)

Cuprizon (EXP)

decabromodiphenyl ether (EXP)

Deguelin (ISO)

dexamethasone (ISO)

dioxygen (EXP)

disodium selenite (ISO)

diuron (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

exemestane (ISO)

folic acid (ISO)

indometacin (ISO)

L-methionine (ISO)

lithium chloride (ISO)

melphalan (ISO)

mercury dibromide (ISO)

methylmercury chloride (ISO)

N-methyl-4-phenylpyridinium (ISO)

nickel atom (ISO)

niclosamide (ISO)

O-methyleugenol (ISO)

oxaliplatin (EXP)

p-chloromercuribenzoic acid (ISO)

panobinostat (ISO)

PCB138 (ISO)

perfluorooctane-1-sulfonic acid (ISO)

pirinixic acid (EXP,ISO)

Ptaquiloside (ISO)

rotenone (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

testosterone (EXP)

thapsigargin (ISO)

topotecan (EXP)

trichostatin A (ISO)

triptonide (ISO)

troglitazone (ISO)

tungsten (ISO)

tunicamycin (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vincristine (ISO)

vorinostat (ISO)

XAV939 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of transcription by RNA polymerase II (ISO)

positive regulation of transcription, DNA-templated (ISO)

regulation of transcription by RNA polymerase II (IBA)

regulation of transcription, DNA-templated (IEA,ISO)

Cellular Component

nucleus (IEA,ISO)

Molecular Function

C2H2 zinc finger domain binding (IPI)

DNA binding (IEA,ISO)

DNA-binding transcription activator activity, RNA polymerase II-specific (ISO)

DNA-binding transcription factor activity (IEA,ISO)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

metal ion binding (IEA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

DNA modification pathway (ISO)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA data from the GO Consortium
3.	MGD data from the GO Consortium
4.	NCBI rat LocusLink and RefSeq merged data July 26, 2002
5.	RGD automated data pipeline
6.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	RGD automated import pipeline for gene-chemical interactions
8.	Tsai RY and Reed RR, Mol Cell Biol 1998 Nov;18(11):6447-56.
9.	Wang MM and Reed RR, Nature 1993 Jul 8;364(6433):121-6.

Additional References at PubMed

PMID:9151733	PMID:12139918	PMID:12446773	PMID:14594818	PMID:22194471

Genomics

Comparative Map Data

Ebf1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	10	29,095,858 - 29,489,142 (+)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	10	29,099,933 - 29,487,665 (+)	Ensembl
Rnor_6.0	10	23,654,849 - 24,051,627 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	23,661,013 - 24,050,209 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	23,518,314 - 23,912,932 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	29,770,047 - 30,163,200 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	10	30,132,189 - 30,164,249 (+)	NCBI
Celera	10	28,580,160 - 28,966,044 (+)	NCBI		Celera
Cytogenetic Map	10	q12	NCBI

EBF1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	5	158,695,916 - 159,099,916 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	5	158,695,918 - 159,099,916 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	5	158,122,928 - 158,526,924 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	158,058,006 - 158,459,347 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	5	158,058,006 - 158,459,347	NCBI
Celera	5	154,157,410 - 154,557,967 (-)	NCBI
Cytogenetic Map	5	q33.3	NCBI
HuRef	5	153,220,108 - 153,621,641 (-)	NCBI		HuRef
CHM1_1	5	157,555,693 - 157,959,313 (-)	NCBI		CHM1_1

Ebf1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	44,502,738 - 44,898,923 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	11	44,508,144 - 44,898,918 (+)	Ensembl
GRCm38	11	44,618,100 - 45,008,096 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	44,617,317 - 45,008,091 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	44,431,636 - 44,818,677 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	11	44,461,557 - 44,848,598 (+)	NCBI			mm8
Celera	11	49,253,154 - 49,636,053 (+)	NCBI		Celera
Cytogenetic Map	11	B1.1	NCBI
cM Map	11	26.45	NCBI

Ebf1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955408	12,739,083 - 13,121,699 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955408	12,735,893 - 13,121,700 (-)	NCBI	ChiLan1.0	ChiLan1.0

EBF1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	5	160,708,235 - 161,108,634 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	160,708,235 - 161,108,568 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	5	154,091,337 - 154,492,474 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

EBF1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	51,378,314 - 51,765,768 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	51,379,233 - 51,763,035 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	51,265,503 - 51,657,405 (+)	NCBI
ROS_Cfam_1.0	4	51,807,031 - 52,199,508 (+)	NCBI
UMICH_Zoey_3.1	4	51,636,811 - 52,028,674 (+)	NCBI
UNSW_CanFamBas_1.0	4	51,742,320 - 52,134,292 (+)	NCBI
UU_Cfam_GSD_1.0	4	52,259,568 - 52,651,762 (+)	NCBI

Ebf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	105,817,069 - 106,194,351 (+)	NCBI
SpeTri2.0	NW_004936515	4,266,419 - 4,643,702 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

EBF1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	64,359,000 - 64,752,243 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	16	64,357,999 - 64,753,188 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	16	70,161,409 - 70,559,535 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

EBF1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	61,097,268 - 61,502,784 (-)	NCBI
ChlSab1.1 Ensembl	23	61,109,331 - 61,243,631 (-)	Ensembl
Vero_WHO_p1.0	NW_023666034	16,121,138 - 16,527,144 (+)	NCBI

Ebf1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624733	30,327,541 - 30,735,432 (+)	NCBI

Position Markers

D10Mgh11

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	29,299,504 - 29,299,638 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	23,861,015 - 23,861,148	NCBI	Rnor6.0
Rnor_5.0	10	23,722,820 - 23,722,953	UniSTS	Rnor5.0
RGSC_v3.4	10	29,974,190 - 29,974,324	RGD	RGSC3.4
RGSC_v3.4	10	29,974,191 - 29,974,324	UniSTS	RGSC3.4
RGSC_v3.1	10	29,975,240 - 29,975,373	RGD
Celera	10	28,778,788 - 28,778,925	UniSTS
RH 3.4 Map	10	315.9	UniSTS
RH 3.4 Map	10	315.9	RGD
RH 2.0 Map	10	337.6	RGD
Cytogenetic Map	10	q21	UniSTS

D10Rat253

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	29,309,567 - 29,309,696 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	23,870,994 - 23,871,122	NCBI	Rnor6.0
Rnor_5.0	10	23,732,805 - 23,732,933	UniSTS	Rnor5.0
RGSC_v3.4	10	29,984,213 - 29,984,342	RGD	RGSC3.4
RGSC_v3.4	10	29,984,214 - 29,984,342	UniSTS	RGSC3.4
RGSC_v3.1	10	29,985,262 - 29,985,391	RGD
Celera	10	28,788,748 - 28,788,876	UniSTS
SHRSP x BN Map	10	32.8899	RGD
SHRSP x BN Map	10	32.8899	UniSTS
Cytogenetic Map	10	q21	UniSTS

D10Mco53

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	29,124,996 - 29,125,903 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	23,685,456 - 23,686,360	NCBI	Rnor6.0
Rnor_5.0	10	23,548,115 - 23,549,019	UniSTS	Rnor5.0
RGSC_v3.4	10	29,794,232 - 29,795,136	UniSTS	RGSC3.4
Celera	10	28,604,621 - 28,605,525	UniSTS
Cytogenetic Map	10	q21	UniSTS

D5S412

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	29,408,357 - 29,408,520 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	23,970,692 - 23,970,854	NCBI	Rnor6.0
Rnor_5.0	10	23,831,787 - 23,831,949	UniSTS	Rnor5.0
RGSC_v3.4	10	30,083,708 - 30,083,870	UniSTS	RGSC3.4
Celera	10	28,887,388 - 28,887,550	UniSTS
Cytogenetic Map	10	q21	UniSTS

D11Mit175

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	29,102,109 - 29,102,215 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	23,662,568 - 23,662,673	NCBI	Rnor6.0
Rnor_5.0	10	23,525,227 - 23,525,332	UniSTS	Rnor5.0
RGSC_v3.4	10	29,771,344 - 29,771,449	UniSTS	RGSC3.4
Celera	10	28,581,715 - 28,581,820	UniSTS
Cytogenetic Map	10	q21	UniSTS

RH133481

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	29,210,663 - 29,210,872 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	23,771,681 - 23,771,889	NCBI	Rnor6.0
Rnor_5.0	10	23,633,416 - 23,633,624	UniSTS	Rnor5.0
RGSC_v3.4	10	29,880,870 - 29,881,078	UniSTS	RGSC3.4
Celera	10	28,690,153 - 28,690,361	UniSTS
RH 3.4 Map	10	321.0	UniSTS
Cytogenetic Map	10	q21	UniSTS

BE107925

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	29,283,059 - 29,283,229 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	23,844,573 - 23,844,742	NCBI	Rnor6.0
Rnor_5.0	10	23,706,105 - 23,706,274	UniSTS	Rnor5.0
RGSC_v3.4	10	29,957,749 - 29,957,918	UniSTS	RGSC3.4
Celera	10	28,762,354 - 28,762,523	UniSTS
RH 3.4 Map	10	319.6	UniSTS
Cytogenetic Map	10	q21	UniSTS

BF407519

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	29,149,999 - 29,150,164 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	23,710,732 - 23,710,896	NCBI	Rnor6.0
Rnor_5.0	10	23,573,391 - 23,573,555	UniSTS	Rnor5.0
RGSC_v3.4	10	29,819,234 - 29,819,398	UniSTS	RGSC3.4
Celera	10	28,629,586 - 28,629,750	UniSTS
RH 3.4 Map	10	317.0	UniSTS
Cytogenetic Map	10	q21	UniSTS

D3S3187

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	29,458,388 - 29,459,370 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	24,020,559 - 24,021,540	NCBI	Rnor6.0
Rnor_5.0	10	23,881,864 - 23,882,845	UniSTS	Rnor5.0
RGSC_v3.4	10	30,134,520 - 30,135,501	UniSTS	RGSC3.4
Celera	10	28,937,326 - 28,938,307	UniSTS
Cytogenetic Map	10	q21	UniSTS

D5S412

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	29,408,357 - 29,408,472 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	23,970,692 - 23,970,806	NCBI	Rnor6.0
Rnor_5.0	10	23,831,787 - 23,831,901	UniSTS	Rnor5.0
RGSC_v3.4	10	30,083,708 - 30,083,822	UniSTS	RGSC3.4
Celera	10	28,887,388 - 28,887,502	UniSTS
Cytogenetic Map	10	q21	UniSTS

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2293680	Bss40	Bone structure and strength QTL 40	5.66	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	10	1	35225947	Rat
634327	Hc4	Hypercalciuria QTL 4	2.4		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	10	1	38328221	Rat
7411611	Foco17	Food consumption QTL 17	18.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	10	1	42315980	Rat
70223	Bp57	Blood pressure QTL 57	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	1	80676123	Rat
10401803	Kidm50	Kidney mass QTL 50			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	10	418344	45418344	Rat
631554	Bp133	Blood pressure QTL 133		0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	743364	63851208	Rat
2313064	Bmd71	Bone mineral density QTL 71	0.9	0.0001	tibia mineral mass (VT:1000283)	cortical volumetric bone mineral density (CMO:0001730)	10	5387014	50387014	Rat
2313066	Bss63	Bone structure and strength QTL 63	1.4	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	10	5387014	50387014	Rat
2313081	Bss64	Bone structure and strength QTL 64	1.3	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	10	5387014	50387014	Rat
2313095	Bss62	Bone structure and strength QTL 62	1.5	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	5387014	50387014	Rat
2313104	Bss61	Bone structure and strength QTL 61	0.9	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	10	5387014	50387014	Rat
2298544	Neuinf9	Neuroinflammation QTL 9	4.6		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	10	5801990	62146030	Rat
8662860	Vetf10	Vascular elastic tissue fragility QTL 10			artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	10	6154182	73453136	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6357896	96121100	Rat
1578761	Stresp21	Stress response QTL 21	3.3		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	6375746	51375746	Rat
2303118	Mamtr7	Mammary tumor resistance QTL 7		0.003	mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	10	9658275	104670812	Rat
9590310	Scort19	Serum corticosterone level QTL 19	6.3	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	11474010	56474010	Rat
9590268	Scort13	Serum corticosterone level QTL 13	3.26	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	11474010	56474010	Rat
9589136	Insul27	Insulin level QTL 27	10.46	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	10	11474010	56474010	Rat
2301967	Cm73	Cardiac mass QTL 73	4.55		heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	14487011	89062041	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14487011	104060283	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14487011	107057807	Rat
1354587	Kidm21	Kidney mass QTL 21	3.3		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	10	15028513	60430477	Rat
631564	Apr3	Acute phase response QTL 3	3.9		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	10	15275955	60275955	Rat
6893350	Bw99	Body weight QTL 99	0.87	0.16	body mass (VT:0001259)	body weight (CMO:0000012)	1	15906665	60906665	Rat
6893352	Bw100	Body weight QTL 100	0.33	0.6	body mass (VT:0001259)	body weight (CMO:0000012)	1	15906665	60906665	Rat
631532	Cm50	Cardiac mass QTL 50	6.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	10	17907113	51786432	Rat
1598852	Anxrr19	Anxiety related response QTL 19	5.07		body movement coordination trait (VT:0005424)	number of rearing movements in an experimental apparatus (CMO:0001752)	10	18167841	63167841	Rat
2313055	Bw96	Body weight QTL 96	3.6	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	10	19606483	64606483	Rat
2313087	Bmd80	Bone mineral density QTL 80	3.2	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	10	19606483	64606483	Rat
1554317	Bmd4	Bone mineral density QTL 4	9.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	19816042	99406971	Rat
1581497	Esta1	Estrogen-induced thymic atrophy QTL 1			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	21329805	61345413	Rat
724556	Pur2	Proteinuria QTL 2	5.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	22427500	90627625	Rat
631531	Iresp2	Immunoglobin response QTL2	6.3		blood immunoglobulin E amount (VT:0002492)	serum total immunoglobulin E level (CMO:0001542)	10	22918268	36400810	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
70224	Eae3	Experimental allergic encephalomyelitis QTL 3	4.1		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	10	26521957	61345413	Rat
1298069	Bp168	Blood pressure QTL 168	5.5		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	10	26521957	98003205	Rat
631542	Bp82	Blood pressure QTL 82	6.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	26521957	98952741	Rat
2300171	Bmd58	Bone mineral density QTL 58	4.9	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	26944628	71944628	Rat
10402859	Bp381	Blood pressure QTL 381		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	27606468	72606468	Rat
2292441	Bp308	Blood pressure QTL 308			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	27606468	72606468	Rat
2298480	Eau7	Experimental allergic uveoretinitis QTL 7		0.0049	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	10	27957626	34490668	Rat
724527	Bp148	Blood pressure QTL 148		0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	28453136	73453136	Rat
1600371	Mcs21	Mammary carcinoma susceptibility QTL 21	3		mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	10	28875650	52200160	Rat
1331762	Rf40	Renal function QTL 40	3.873		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	10	29299504	64155584	Rat
1331791	Cm31	Cardiac mass QTL 31	3.84606		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	29299504	107211142	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	95
Count of miRNA genes:	88
Interacting mature miRNAs:	94
Transcripts:	ENSRNOT00000047970
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	2	2	7		14		2	2	51	22	20	8	2
Low	1	41	24	15	5	15	6	9	23	13	21	3	6
Below cutoff			24	24		24

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_053820	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006246117	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006246118	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006246120	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596959	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596960	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596961	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596962	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085048	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085049	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC115187	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ175272	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ177833	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ232013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000219	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	L24051	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000047970 ⟹ ENSRNOP00000050344

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	10	23,661,343 - 23,687,606 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000071435 ⟹ ENSRNOP00000067433

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	29,100,022 - 29,487,665 (+)	Ensembl
Rnor_6.0 Ensembl	10	23,914,894 - 24,049,832 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000076664 ⟹ ENSRNOP00000068319

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	29,099,933 - 29,487,665 (+)	Ensembl
Rnor_6.0 Ensembl	10	23,661,013 - 24,049,460 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000076674 ⟹ ENSRNOP00000068330

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	10	23,661,301 - 24,050,209 (+)	Ensembl

RefSeq Acc Id:

NM_053820 ⟹ NP_446272

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	29,100,555 - 29,487,697 (+)	NCBI
Rnor_6.0	10	23,661,013 - 24,049,864 (+)	NCBI
Rnor_5.0	10	23,518,314 - 23,912,932 (+)	NCBI
RGSC_v3.4	10	29,770,047 - 30,163,200 (+)	RGD
Celera	10	28,580,160 - 28,966,044 (+)	NCBI

Sequence:

show sequence

AACCAAACAACCCCCAACAGCCAAGCATACATCTCTGTTTTTTCTTAATTTTGGTCTTTTCGTT
GGATTTTCCCTTTCTTTTTTTTCCCTCGCCCCCCCCTCCTTGTTATCGCTCAGTTTTGAGCGAA
GGTTTACATTTTTAAAAATTTTGCTTTTCAGCCCGCCTTGATGTAGCGCGAGTTTCATCGACTC
AAAAAAAAAAAATCTGTGGTTGGAGTTTTTTTTTTCCTTTTTTTTTTTTAATATTTTCAAAGGG
GAGGAGATTTTCCACAAGAAAAGGTTGTTTTCATGTTTGGGATCCAGGAAAGCATCCAACGGAG
TGGAAGCAGTATGAAGGAAGAGCCGCTGGGCAGCGGCATGAACGCGGTGCGGACGTGGATGCAG
GGCGCCGGGGTGCTGGACGCCAACACAGCGGCGCAGAGCGGGGTGGGTCTGGCCCGGGCTCACT
TTGAGAAGCAGCCGCCTTCTAACCTGCGGAAATCCAACTTCTTCCACTTCGTCCTGGCCCTCTA
CGACAGACAGGGCCAGCCCGTGGAGATTGAGAGGACGGCCTTTGTGGGGTTCGTGGAGAAGGAA
AAAGAAGCCAACAGCGAAAAGACCAATAATGGGATCCACTACCGGCTCCAGCTCCTCTACAGCA
ATGGGATAAGGACCGAACAGGATTTCTACGTGCGCCTCATCGACTCCATGACAAAACAAGCCAT
AGTGTATGAAGGCCAAGACAAGAACCCGGAAATGTGCCGAGTACTGCTCACACACGAGATCATG
TGCAGCCGCTGTTGTGACAAGAAAAGCTGTGGCAACCGAAATGAGACTCCCTCAGATCCAGTGA
TAATTGACAGATTCTTCCTGAAGTTTTTCCTTAAGTGTAACCAAAATTGCCTAAAGAATGCGGG
GAACCCACGTGACATGCGGAGATTCCAGGTCGTGGTGTCTACCACAGTCAACGTGGATGGCCAT
GTCCTGGCAGTCTCTGATAACATGTTTGTCCACAATAACTCCAAACACGGGCGGAGGGCTAGGA
GGCTTGACCCCTCGGAAGCAGCTACTCCCTGTATCAAAGCCATCAGCCCGAGTGAAGGATGGAC
GACGGGAGGCGCGACTGTGATCATCATAGGGGACAATTTCTTTGATGGGTTACAGGTCATATTC
GGTACCATGCTGGTCTGGAGTGAGTTGATAACTCCTCATGCCATCCGTGTTCAGACACCTCCTC
GGCACATCCCTGGTGTTGTGGAAGTCACATTGTCCTACAAGTCCAAGCAGTTCTGCAAAGGGAC
ACCAGGCAGATTCATCTATACAGCACTCAATGAACCCACCATCGACTATGGTTTCCAGAGGTTA
CAGAAGGTCATTCCCCGGCATCCTGGTGACCCAGAGCGTTTGCCAAAGGAAGTGATCCTTAAAA
GGGCTGCAGATCTGGTTGAAGCCCTGTATGGGATGCCCCACAACAACCAGGAGATTATCCTGAA
GAGAGCTGCCGACATTGCTGAGGCTCTGTACAGTGTCCCTCGAAACCACAACCAGCTCCCGGCC
CTCGCTAACACTTCGGTCCACGCAGGGATGATGGGCGTGAACTCCTTCAGTGGACAACTGGCTG
TGAATGTCTCTGAGGCATCACAAGCCACCAATCAAGGTTTCACCCGCAACTCAAGCAGTGTGTC
ACCACATGGATATGTGCCTAGCACCACCCCACAGCAGACCAACTATAACTCTGTCACCACAAGC
ATGAACGGCTACGGCTCTGCCGCCATGTCCAATTTGGGCGGCTCCCCAACCTTCCTCAATGGCT
CAGCTGCCAACTCACCCTACGCCATTGTGCCATCCAGCCCCACCATGGCCTCATCTACAAGCCT
CCCCTCCAACTGCAGCAGCTCCTCGGGCATCTTCTCCTTCTCACCAGCCAACATGGTCTCTGCT
GTGAAACAGAAGAGTGCTTTCGCACCAGTTGTCAGACCCCAGACCTCCCCGCCTCCCACCTGCA
CCAGCACCAACGGGAACAGCCTGCAAGCGATTTCTGGCATGATTGTCCCTCCCATGTGAAAGAA
TTGCCTTGAAGAATTTTATTAATGAAGAGGTTGGATCCTGCTACGAAAGTAATCTGACATGAGT
CCCAGAGTGGAACTTTTAACTCAGGCCTTTTTAAGAGGAAATCACACAATAACTGCAGATTTTT
AAACAAAGTCACCGACCTTGCAAATACTGAGATTGGAAAGGGGACCTGCCAGAGCGGGGTGTTG
GATAGAGTCGGACTCCCCGAGTGTCTGGGGGATATATTTATTCTGTATTGATAAAAAAAAGAAC
AAGCCCACCTTTTCTTTTTTTCTTTCTCTTTTCTTTCTTTAAGCTTAACTCTGCAACCATTTGT
CTTTTGTAAACCATTAAGCTACACACAAGGGCCACTCTAAATAAGACTCCATGTTTTAATTTAT
GATGTTTTTAAAGCTATGTAAGGGGAGAATGAAGTGGTGATATTTACAAAAAAAAAAGAAAAAA
AAGAAAAAAGAAAAAAAGCTAAAAAGGAAAAAAAAAAGAAAAACAGGGAAAAATAAATTAAAAA
AAAAAAAAAGCTCGTAAGGGACAGAATAGGAGAATGCCAGTTAGATTTTTTAGAAAACTAAGGG
TCGGCTTCTGCGCCTTAAAGCATATCAGTGGTAATTAGCTCAGACAGTGCATTTCCAATATCTA
ACTTAACACGCCATCCCTTAGCAGTGCAAGCTTCTCTCTCTCTTTTGTATGGTTGTCTTAAGTA
ACTGTGTAAATAGGTGTAGCCTGGAAAGTTACCAAGCAACATACATGATCATATTTTCCCTTGT
ACTCAGAAAATCCAGTGCCTCTAGACAGATTGTTTAAAAACGAACAAAAGAACAAAAAACAAAA
AAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006246117 ⟹ XP_006246179

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	29,099,897 - 29,489,142 (+)	NCBI
Rnor_6.0	10	23,659,431 - 24,051,627 (+)	NCBI
Rnor_5.0	10	23,518,314 - 23,912,932 (+)	NCBI

Sequence:

show sequence

CTTTCCTTCCTTTCCCTCCCTCGCTCTCATCTCTCTTCCCTACTTCCCAGTCTCCCTGCGGTTG
TGATGGAAGTTGGCTTAAGCCCCCTTCGCGTTTAACAGAAAGAACTCTGTGTGCCAAATAACCA
GCTAATCAGAGAAGGCAACATCCTTGCTGTGTTGGTAAGGAAAAATAAAGCTACTTTGCGGAGC
AGGAGAGGGGTTTGGGGATCTGAAGATATTTAGAGTCTCACCCTGGCACAGTCCCAGAGACCTA
TTCATTCTTAAGAGACTGCTGAAGTGACCGAGTAAGAACCGCGCCCAACAGCGTTTGTGTCTGG
GCTAACCCCAGAATCAGAGGCATTTCAGAGGCCTGCTAAGGACCGAGTCTGGATCACACAATCC
CTTGTGCGATCTACTAAAGTATTCGTTGGGGCAATAGGCTTCTCTACCTCTCCTGACACGGAGA
CAGTGTGTCTTCCGAGGGCCCACAAGTCTCGATCTTGCTCGCACACAAAGTTCAACCCGCTACC
CTTGCTTCAGAGAGAAGAGCTGGGCACCTGGGATGGGCATCCTGGCTTTTCTGCCTGGTCAGTC
CTTTTTCCTCCAAGTTTGCCCCCGAAGTCCTAGGACAGCCGAGCAAGGGACTAGGCGTCTGCCC
AGGGAGAACGCAGTCAGTACGCCTCCGTCGCGCTCTGGGCGCTGAGGGGATGCTCAGGAACTGC
CATGGCGCATACCCCTTCGGCTCAGGATACCTCCATCTCCTTCCCTCTGCCCCCTTTCTTGCTC
TTTACGGCCGAGCTCCCTCCAGCCTAGATGCTGGTGCTCAGAGCTCCCTCGTTCGCCACTTTGC
CGGGAACTTTGGCGGCTCCCCTGCGCCACCCAGAGAAGGATGTTAATGAGGGAGTGTGGCCAGG
CTCTGTGAACAAGCCAGCTCGGGAGCTGCGATTGGCTGCGATAAGGCGGAAGGATGACGTTATG
CAAAGAAGGGGCGTGTCCAGGCTGCGAGGGCCCCGCCTCCTTCCCTTTGGGGTTAGTGTGCCTG
TGTTTAGCTCTAGGGAGAGTCAAACTGGATTCCACAGGGAGAGCCTGCAAATCACTTCTATTTT
AGCAAGGAGAAAACAGAATCTCCATCCAGCAGGGTCCACCCCTCTCTTTCTCCCTCTCCTCTCT
TTTTCTATCTCTTTCCCTCCCCCCCTTCCTCTTTCCCTCTCTCTCCCCTTCCCCCCACCCTCTC
CGGTGTATCTGTCTACAGCAACCAGCGTCCTCATCTACACGCACGGAAAGGAAAGAAACATCTT
TGGTTGAGAGAGGAGGAGGAAAAAAAGAGAGAGAGAAAAAAACTTGCCTGGTTGTGGAAAATGA
CACTTCAAGTAGCCAAGCCGGCTTCGAGAGTCGTATCTATTGTTTCTTAAATTGTCATCAGGGT
GGTTTTTTTCTTCCTGCTTCTTCAAGTGAAGGTACCGCTACAAAAGGAAACTCCAGCCCCTCCT
GTTCTCCAACGGCCTGTGATTCTCAAAAAGAAAAAAAAAGCAAAAAAAAAAAAAAAAAAGCAAA
AAAAAAAAAAAAAGGAAAAAAAAAGCACCCAAACTCAAAACCAACCAACCAAACAACCCCCAAC
AGCCAAGCATACATCTCTGTTTTTTCTTAATTTTGGTCTTTTCGTTGGATTTTCCCTTTCTTTT
TTTTCCCTCGCCCCCCCCTCCTTGTTATCGCTCAGTTTTGAGCGAAGGTTTACATTTTTAAAAA
TTTTGCTTTTCAGCCCGCCTTGATGTAGCGCGAGTTTCATCGACTCAAAAAAAAAAAATCTGTG
GTTGGAGTTTTTTTTTTCCTTTTTTTTTTTTAATATTTTCAAAGGGGAGGAGATTTTCCACAAG
AAAAGGTTGTTTTCATGTTTGGGATCCAGGAAAGCATCCAACGGAGTGGAAGCAGTATGAAGGA
AGAGCCGCTGGGCAGCGGCATGAACGCGGTGCGGACGTGGATGCAGGGCGCCGGGGTGCTGGAC
GCCAACACAGCGGCGCAGAGCGGGGTGGGTCTGGCCCGGGCTCACTTTGAGAAGCAGCCGCCTT
CTAACCTGCGGAAATCCAACTTCTTCCACTTCGTCCTGGCCCTCTACGACAGACAGGGCCAGCC
CGTGGAGATTGAGAGGACGGCCTTTGTGGGGTTCGTGGAGAAGGAAAAAGAAGCCAACAGCGAA
AAGACCAATAATGGGATCCACTACCGGCTCCAGCTCCTCTACAGCAATGGGATAAGGACCGAAC
AGGATTTCTACGTGCGCCTCATCGACTCCATGACAAAACAAGCCATAGTGTATGAAGGCCAAGA
CAAGAACCCGGAAATGTGCCGAGTACTGCTCACACACGAGATCATGTGCAGCCGCTGTTGTGAC
AAGAAAAGCTGTGGCAACCGAAATGAGACTCCCTCAGATCCAGTGATAATTGACAGATTCTTCC
TGAAGTTTTTCCTTAAGTGTAACCAAAATTGCCTAAAGAATGCGGGGAACCCACGTGACATGCG
GAGATTCCAGGTCGTGGTGTCTACCACAGTCAACGTGGATGGCCATGTCCTGGCAGTCTCTGAT
AACATGTTTGTCCACAATAACTCCAAACACGGGCGGAGGGCTAGGAGGCTTGACCCCTCGGAAG
GTACGCCCTCTTATCTGGAACATGCAGCTACTCCCTGTATCAAAGCCATCAGCCCGAGTGAAGG
ATGGACGACGGGAGGCGCGACTGTGATCATCATAGGGGACAATTTCTTTGATGGGTTACAGGTC
ATATTCGGTACCATGCTGGTCTGGAGTGAGTTGATAACTCCTCATGCCATCCGTGTTCAGACAC
CTCCTCGGCACATCCCTGGTGTTGTGGAAGTCACATTGTCCTACAAGTCCAAGCAGTTCTGCAA
AGGGACACCAGGCAGATTCATCTATACAGCACTCAATGAACCCACCATCGACTATGGTTTCCAG
AGGTTACAGAAGGTCATTCCCCGGCATCCTGGTGACCCAGAGCGTTTGCCAAAGGAAGTGATCC
TTAAAAGGGCTGCAGATCTGGTTGAAGCCCTGTATGGGATGCCCCACAACAACCAGGAGATTAT
CCTGAAGAGAGCTGCCGACATTGCTGAGGCTCTGTACAGTGTCCCTCGAAACCACAACCAGCTC
CCGGCCCTCGCTAACACTTCGGTCCACGCAGGGATGATGGGCGTGAACTCCTTCAGTGGACAAC
TGGCTGTGAATGTCTCTGAGGCATCACAAGCCACCAATCAAGGTTTCACCCGCAACTCAAGCAG
TGTGTCACCACATGGATATGTGCCTAGCACCACCCCACAGCAGACCAACTATAACTCTGTCACC
ACAAGCATGAACGGCTACGGCTCTGCCGCCATGTCCAATTTGGGCGGCTCCCCAACCTTCCTCA
ATGGCTCAGCTGCCAACTCACCCTACGCCATTGTGCCATCCAGCCCCACCATGGCCTCATCTAC
AAGCCTCCCCTCCAACTGCAGCAGCTCCTCGGGCATCTTCTCCTTCTCACCAGCCAACATGGTC
TCTGCTGTGAAACAGAAGAGTGCTTTCGCACCAGTTGTCAGACCCCAGACCTCCCCGCCTCCCA
CCTGCACCAGCACCAACGGGAACAGCCTGCAAGCGATTTCTGGCATGATTGTCCCTCCCATGTG
AAAGAATTGCCTTGAAGAATTTTATTAATGAAGAGGTTGGATCCTGCTACGAAAGTAATCTGAC
ATGAGTCCCAGAGTGGAACTTTTAACTCAGGCCTTTTTAAGAGGAAATCACACAATAACTGCAG
ATTTTTAAACAAAGTCACCGACCTTGCAAATACTGAGATTGGAAAGGGGACCTGCCAGAGCGGG
GTGTTGGATAGAGTCGGACTCCCCGAGTGTCTGGGGGATATATTTATTCTGTATTGATAAAAAA
AAGAACAAGCCCACCTTTTCTTTTTTTCTTTCTCTTTTCTTTCTTTAAGCTTAACTCTGCAACC
ATTTGTCTTTTGTAAACCATTAAGCTACACACAAGGGCCACTCTAAATAAGACTCCATGTTTTA
ATTTATGATGTTTTTAAAGCTATGTAAGGGGAGAATGAAGTGGTGATATTTACAAAAAAAAAAG
AAAAAAAAGAAAAAAGAAAAAAAGCTAAAAAGGAAAAAAAAAAGAAAAACAGGGAAAAATAAAT
TAAAAAAAAAAAAAAGCTCGTAAGGGACAGAATAGGAGAATGCCAGTTAGATTTTTTAGAAAAC
TAAGGGTCGGCTTCTGCGCCTTAAAGCATATCAGTGGTAATTAGCTCAGACAGTGCATTTCCAA
TATCTAACTTAACACGCCATCCCTTAGCAGTGCAAGCTTCTCTCTCTCTTTTGTATGGTTGTCT
TAAGTAACTGTGTAAATAGGTGTAGCCTGGAAAGTTACCAAGCAACATACATGATCATATTTTC
CCTTGTACTCAGAAAATCCAGTGCCTCTAGACAGATTGTTTAAAAACGAACAAAAGAACAAAAA
ACAAAAAAACAAAACAAAACAAAAACCCTGCATCTTTAAACCCGATCTTATTCTTTTACTTAAC
GCCATCTTCTCCCAAAGCCAGCGGCCTCTGAAGGTGGAGCGGCAGGTGTACCGAGCGAGACTCT
CCTAAACTTCACGGGACAGGGTCCAGGCACAGAATCCCACATACGCCCTCCAGTTTACCAAGCC
AAAATCTTGCTCACTCCACCATCAAGAGAACCAAGCTTACTCATGCTGGAGTCCTAAATATTAA
CTCTGTATCGGGGCCCAAAAACCCAAACAAAGCAAACCGACAAAGGTATGCTATTCCGGGCTCC
CAAATCGCACAGGGGTCTGTACCAGCAAGACCCCCTCATGATTGGAAAGTTCTACATTCAGTCA
ACAGGTAAAATGCTTTGGAGTTCAGTGTGAAAGGAAACTGGGAGAGAGGAAGGGAAGGTTGAGG
CTTCAAACTCAGCTTTCCATGGGAAAGTTTGCTTTCAACTGGGAAGTGTTCTTAAAGAATCCAT
AGCAAAGATCCAGCCAGCAAGGCTCTGAGGGGGCGTGTTCCTGCTGACCTTTGCCCTTCTGTTT
CTGTACGTAGTTATAAATACTGTAGATTTCTTTTGTGATTTTTTTTTTGCCAAAGTTGTTGTTT
TATTTATACATTTTAATGTCTTAAGGTGATTTTCGATCTCACACACAAAGGATTTTGCCGCATA
TTTTGCAAATAAATAAAAAGCGCGCTACCTTTAGCTTGCACATACTTGCAAAGTTAATTCAAAG
GCTTTCTGTTTGTTTGTTTTAATGGGGATTTTGTAAAATATCCATATAAATAATGTATTTATCT
CTGGAATTTGTACATTGCTTTTCTCTCCTTCCTCCAACCCCCCCCCAGCCCCAGTTTATTTTGT
GTGTGTGTTTGCTTTGTGAACAGTGCGCGCATATAGTTTCGTCGCCTATGGTTGTATTAACTGT
TTCAATGTGATTTTTAAACAATTCATTTATAGGTATTTTTAGTATTGTTTTAAACCATGCTTCA
TTTTTTTTTATTTCCACCCAAAAGCCATTGTCTATTTTTGTATTATTTGTAAGTTAAGAAGTTT
TTTCCAATATATGGCAAAAAAAATTAGTAGCATATTATTCTTGTAGTATTTAGTTCTGTAGATT
TAAAAATAATGTATCCTTTGCTTTGGAAGCATACAAAAAATGCTGTTTTACTCTATTAATATGC
ATGGAATCTCTCCCTTTGGAGTGACGCATTTTGTGCATTAAATTTGGGGGAGAAACTTCATAGA
GATCAATGGACATACTTTCTTTCTTAAGTCTGCTTGTATATTCTCTGTCTTTCACATAAATATA
AACCAGCAGATTGGATGCCTTAACAATGCAAGTCACACCCATTTCACCTGTACATTGTACTGTG
CACCCCCACCGTCAGCCATCACTCACATCTAAGAAAAAAAACAAAGAAAAAGAAGAAAAAAAAG
AGAAATGGAAAAGCACAAACGAACTGTTTTGTAACTTTAAGACAATGTTACTTTTTCTAGTAGA
GCAAGTGAACATTAACGATGCTGCGACTGTGCATGCCCCGTATGGATTTCAACGGTTTTCACTA
GACTGTCAGAGTGCGGATTTTTATGGGTTGGGGAGGGCAGGGGAGGGGAGTTGGGAGGGGGGAC
TGGTAGGGAAGGGGAGGGAGGAAAGCCGATTTTTCATGGTGAGAAATAATAATAATGACAACTG
ATGATAATAATAATAATAATAAAAAGAAACTGGAAAAAATATAA

hide sequence

RefSeq Acc Id:

XM_006246118 ⟹ XP_006246180

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	29,099,900 - 29,489,142 (+)	NCBI
Rnor_6.0	10	23,659,432 - 24,051,627 (+)	NCBI
Rnor_5.0	10	23,518,314 - 23,912,932 (+)	NCBI

Sequence:

show sequence

TTTCCTTCCTTTCCCTCCCTCGCTCTCATCTCTCTTCCCTACTTCCCAGTCTCCCTGCGGTTGT
GATGGAAGTTGGCTTAAGCCCCCTTCGCGTTTAACAGAAAGAACTCTGTGTGCCAAATAACCAG
CTAATCAGAGAAGGCAACATCCTTGCTGTGTTGGTAAGGAAAAATAAAGCTACTTTGCGGAGCA
GGAGAGGGGTTTGGGGATCTGAAGATATTTAGAGTCTCACCCTGGCACAGTCCCAGAGACCTAT
TCATTCTTAAGAGACTGCTGAAGTGACCGAGTAAGAACCGCGCCCAACAGCGTTTGTGTCTGGG
CTAACCCCAGAATCAGAGGCATTTCAGAGGCCTGCTAAGGACCGAGTCTGGATCACACAATCCC
TTGTGCGATCTACTAAAGTATTCGTTGGGGCAATAGGCTTCTCTACCTCTCCTGACACGGAGAC
AGTGTGTCTTCCGAGGGCCCACAAGTCTCGATCTTGCTCGCACACAAAGTTCAACCCGCTACCC
TTGCTTCAGAGAGAAGAGCTGGGCACCTGGGATGGGCATCCTGGCTTTTCTGCCTGGTCAGTCC
TTTTTCCTCCAAGTTTGCCCCCGAAGTCCTAGGACAGCCGAGCAAGGGACTAGGCGTCTGCCCA
GGGAGAACGCAGTCAGTACGCCTCCGTCGCGCTCTGGGCGCTGAGGGGATGCTCAGGAACTGCC
ATGGCGCATACCCCTTCGGCTCAGGATACCTCCATCTCCTTCCCTCTGCCCCCTTTCTTGCTCT
TTACGGCCGAGCTCCCTCCAGCCTAGATGCTGGTGCTCAGAGCTCCCTCGTTCGCCACTTTGCC
GGGAACTTTGGCGGCTCCCCTGCGCCACCCAGAGAAGGATGTTAATGAGGGAGTGTGGCCAGGC
TCTGTGAACAAGCCAGCTCGGGAGCTGCGATTGGCTGCGATAAGGCGGAAGGATGACGTTATGC
AAAGAAGGGGCGTGTCCAGGCTGCGAGGGCCCCGCCTCCTTCCCTTTGGGGTTAGTGTGCCTGT
GTTTAGCTCTAGGGAGAGTCAAACTGGATTCCACAGGGAGAGCCTGCAAATCACTTCTATTTTA
GCAAGGAGAAAACAGAATCTCCATCCAGCAGGGTCCACCCCTCTCTTTCTCCCTCTCCTCTCTT
TTTCTATCTCTTTCCCTCCCCCCCTTCCTCTTTCCCTCTCTCTCCCCTTCCCCCCACCCTCTCC
GGTGTATCTGTCTACAGCAACCAGCGTCCTCATCTACACGCACGGAAAGGAAAGAAACATCTTT
GGTTGAGAGAGGAGGAGGAAAAAAAGAGAGAGAGAAAAAAACTTGCCTGGTTGTGGAAAATGAC
ACTTCAAGTAGCCAAGCCGGCTTCGAGAGTCGTATCTATTGTTTCTTAAATTGTCATCAGGGTG
GTTTTTTTCTTCCTGCTTCTTCAAGTGAAGGTACCGCTACAAAAGGAAACTCCAGCCCCTCCTG
TTCTCCAACGGCCTGTGATTCTCAAAAAGAAAAAAAAAGCAAAAAAAAAAAAAAAAAAGCAAAA
AAAAAAAAAAAAGGAAAAAAAAAGCACCCAAACTCAAAACCAACCAACCAAACAACCCCCAACA
GCCAAGCATACATCTCTGTTTTTTCTTAATTTTGGTCTTTTCGTTGGATTTTCCCTTTCTTTTT
TTTCCCTCGCCCCCCCCTCCTTGTTATCGCTCAGTTTTGAGCGAAGGTTTACATTTTTAAAAAT
TTTGCTTTTCAGCCCGCCTTGATGTAGCGCGAGTTTCATCGACTCAAAAAAAAAAAATCTGTGG
TTGGAGTTTTTTTTTTCCTTTTTTTTTTTTAATATTTTCAAAGGGGAGGAGATTTTCCACAAGA
AAAGGTTGTTTTCATGTTTGGGATCCAGGAAAGCATCCAACGGAGTGGAAGCAGTATGAAGGAA
GAGCCGCTGGGCAGCGGCATGAACGCGGTGCGGACGTGGATGCAGGGCGCCGGGGTGCTGGACG
CCAACACAGCGGCGCAGAGCGGGGTGGGTCTGGCCCGGGCTCACTTTGAGAAGCAGCCGCCTTC
TAACCTGCGGAAATCCAACTTCTTCCACTTCGTCCTGGCCCTCTACGACAGACAGGGCCAGCCC
GTGGAGATTGAGAGGACGGCCTTTGTGGGGTTCGTGGAGAAGGAAAAAGAAGCCAACAGCGAAA
AGACCAATAATGGGATCCACTACCGGCTCCAGCTCCTCTACAGCAATGGGATAAGGACCGAACA
GGATTTCTACGTGCGCCTCATCGACTCCATGACAAAACAAGCCATAGTGTATGAAGGCCAAGAC
AAGAACCCGGAAATGTGCCGAGTACTGCTCACACACGAGATCATGTGCAGCCGCTGTTGTGACA
AGAAAAGCTGTGGCAACCGAAATGAGACTCCCTCAGATCCAGTGATAATTGACAGATTCTTCCT
GAAGTTTTTCCTTAAGTGTAACCAAAATTGCCTAAAGAATGCGGGGAACCCACGTGACATGCGG
AGATTCCAGGTCGTGGTGTCTACCACAGTCAACGTGGATGGCCATGTCCTGGCAGTCTCTGATA
ACATGTTTGTCCACAATAACTCCAAACACGGGCGGAGGGCTAGGAGGCTTGACCCCTCGGAAGG
TACGCCCTCTTATCTGGAACATGCTACTCCCTGTATCAAAGCCATCAGCCCGAGTGAAGGATGG
ACGACGGGAGGCGCGACTGTGATCATCATAGGGGACAATTTCTTTGATGGGTTACAGGTCATAT
TCGGTACCATGCTGGTCTGGAGTGAGTTGATAACTCCTCATGCCATCCGTGTTCAGACACCTCC
TCGGCACATCCCTGGTGTTGTGGAAGTCACATTGTCCTACAAGTCCAAGCAGTTCTGCAAAGGG
ACACCAGGCAGATTCATCTATACAGCACTCAATGAACCCACCATCGACTATGGTTTCCAGAGGT
TACAGAAGGTCATTCCCCGGCATCCTGGTGACCCAGAGCGTTTGCCAAAGGAAGTGATCCTTAA
AAGGGCTGCAGATCTGGTTGAAGCCCTGTATGGGATGCCCCACAACAACCAGGAGATTATCCTG
AAGAGAGCTGCCGACATTGCTGAGGCTCTGTACAGTGTCCCTCGAAACCACAACCAGCTCCCGG
CCCTCGCTAACACTTCGGTCCACGCAGGGATGATGGGCGTGAACTCCTTCAGTGGACAACTGGC
TGTGAATGTCTCTGAGGCATCACAAGCCACCAATCAAGGTTTCACCCGCAACTCAAGCAGTGTG
TCACCACATGGATATGTGCCTAGCACCACCCCACAGCAGACCAACTATAACTCTGTCACCACAA
GCATGAACGGCTACGGCTCTGCCGCCATGTCCAATTTGGGCGGCTCCCCAACCTTCCTCAATGG
CTCAGCTGCCAACTCACCCTACGCCATTGTGCCATCCAGCCCCACCATGGCCTCATCTACAAGC
CTCCCCTCCAACTGCAGCAGCTCCTCGGGCATCTTCTCCTTCTCACCAGCCAACATGGTCTCTG
CTGTGAAACAGAAGAGTGCTTTCGCACCAGTTGTCAGACCCCAGACCTCCCCGCCTCCCACCTG
CACCAGCACCAACGGGAACAGCCTGCAAGCGATTTCTGGCATGATTGTCCCTCCCATGTGAAAG
AATTGCCTTGAAGAATTTTATTAATGAAGAGGTTGGATCCTGCTACGAAAGTAATCTGACATGA
GTCCCAGAGTGGAACTTTTAACTCAGGCCTTTTTAAGAGGAAATCACACAATAACTGCAGATTT
TTAAACAAAGTCACCGACCTTGCAAATACTGAGATTGGAAAGGGGACCTGCCAGAGCGGGGTGT
TGGATAGAGTCGGACTCCCCGAGTGTCTGGGGGATATATTTATTCTGTATTGATAAAAAAAAGA
ACAAGCCCACCTTTTCTTTTTTTCTTTCTCTTTTCTTTCTTTAAGCTTAACTCTGCAACCATTT
GTCTTTTGTAAACCATTAAGCTACACACAAGGGCCACTCTAAATAAGACTCCATGTTTTAATTT
ATGATGTTTTTAAAGCTATGTAAGGGGAGAATGAAGTGGTGATATTTACAAAAAAAAAAGAAAA
AAAAGAAAAAAGAAAAAAAGCTAAAAAGGAAAAAAAAAAGAAAAACAGGGAAAAATAAATTAAA
AAAAAAAAAAAGCTCGTAAGGGACAGAATAGGAGAATGCCAGTTAGATTTTTTAGAAAACTAAG
GGTCGGCTTCTGCGCCTTAAAGCATATCAGTGGTAATTAGCTCAGACAGTGCATTTCCAATATC
TAACTTAACACGCCATCCCTTAGCAGTGCAAGCTTCTCTCTCTCTTTTGTATGGTTGTCTTAAG
TAACTGTGTAAATAGGTGTAGCCTGGAAAGTTACCAAGCAACATACATGATCATATTTTCCCTT
GTACTCAGAAAATCCAGTGCCTCTAGACAGATTGTTTAAAAACGAACAAAAGAACAAAAAACAA
AAAAACAAAACAAAACAAAAACCCTGCATCTTTAAACCCGATCTTATTCTTTTACTTAACGCCA
TCTTCTCCCAAAGCCAGCGGCCTCTGAAGGTGGAGCGGCAGGTGTACCGAGCGAGACTCTCCTA
AACTTCACGGGACAGGGTCCAGGCACAGAATCCCACATACGCCCTCCAGTTTACCAAGCCAAAA
TCTTGCTCACTCCACCATCAAGAGAACCAAGCTTACTCATGCTGGAGTCCTAAATATTAACTCT
GTATCGGGGCCCAAAAACCCAAACAAAGCAAACCGACAAAGGTATGCTATTCCGGGCTCCCAAA
TCGCACAGGGGTCTGTACCAGCAAGACCCCCTCATGATTGGAAAGTTCTACATTCAGTCAACAG
GTAAAATGCTTTGGAGTTCAGTGTGAAAGGAAACTGGGAGAGAGGAAGGGAAGGTTGAGGCTTC
AAACTCAGCTTTCCATGGGAAAGTTTGCTTTCAACTGGGAAGTGTTCTTAAAGAATCCATAGCA
AAGATCCAGCCAGCAAGGCTCTGAGGGGGCGTGTTCCTGCTGACCTTTGCCCTTCTGTTTCTGT
ACGTAGTTATAAATACTGTAGATTTCTTTTGTGATTTTTTTTTTGCCAAAGTTGTTGTTTTATT
TATACATTTTAATGTCTTAAGGTGATTTTCGATCTCACACACAAAGGATTTTGCCGCATATTTT
GCAAATAAATAAAAAGCGCGCTACCTTTAGCTTGCACATACTTGCAAAGTTAATTCAAAGGCTT
TCTGTTTGTTTGTTTTAATGGGGATTTTGTAAAATATCCATATAAATAATGTATTTATCTCTGG
AATTTGTACATTGCTTTTCTCTCCTTCCTCCAACCCCCCCCCAGCCCCAGTTTATTTTGTGTGT
GTGTTTGCTTTGTGAACAGTGCGCGCATATAGTTTCGTCGCCTATGGTTGTATTAACTGTTTCA
ATGTGATTTTTAAACAATTCATTTATAGGTATTTTTAGTATTGTTTTAAACCATGCTTCATTTT
TTTTTATTTCCACCCAAAAGCCATTGTCTATTTTTGTATTATTTGTAAGTTAAGAAGTTTTTTC
CAATATATGGCAAAAAAAATTAGTAGCATATTATTCTTGTAGTATTTAGTTCTGTAGATTTAAA
AATAATGTATCCTTTGCTTTGGAAGCATACAAAAAATGCTGTTTTACTCTATTAATATGCATGG
AATCTCTCCCTTTGGAGTGACGCATTTTGTGCATTAAATTTGGGGGAGAAACTTCATAGAGATC
AATGGACATACTTTCTTTCTTAAGTCTGCTTGTATATTCTCTGTCTTTCACATAAATATAAACC
AGCAGATTGGATGCCTTAACAATGCAAGTCACACCCATTTCACCTGTACATTGTACTGTGCACC
CCCACCGTCAGCCATCACTCACATCTAAGAAAAAAAACAAAGAAAAAGAAGAAAAAAAAGAGAA
ATGGAAAAGCACAAACGAACTGTTTTGTAACTTTAAGACAATGTTACTTTTTCTAGTAGAGCAA
GTGAACATTAACGATGCTGCGACTGTGCATGCCCCGTATGGATTTCAACGGTTTTCACTAGACT
GTCAGAGTGCGGATTTTTATGGGTTGGGGAGGGCAGGGGAGGGGAGTTGGGAGGGGGGACTGGT
AGGGAAGGGGAGGGAGGAAAGCCGATTTTTCATGGTGAGAAATAATAATAATGACAACTGATGA
TAATAATAATAATAATAAAAAGAAACTGGAAAAAATATAA

hide sequence

RefSeq Acc Id:

XM_006246120 ⟹ XP_006246182

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	29,095,858 - 29,489,142 (+)	NCBI
Rnor_6.0	10	23,654,849 - 24,051,627 (+)	NCBI
Rnor_5.0	10	23,518,314 - 23,912,932 (+)	NCBI

Sequence:

show sequence

TGTTTCTTTTCTTCCACCTCAGTTTGTGCTTTAAAACTTAAGCAGTGTTAATTTATAAATTGCT
AGAGAGCTCCTTTCTAAAATCCTTGGAAACCCACTCCACCCCCTATTTGGAGAGAGCCGGCTCT
AGTTTCCTAGGCAGATAGGCAAAATTCTCAAAGTGGGGTACCAGTCGGGCTCCATCCCAGGGCA
GCACCAGACTACAGTTCTTTTTCTGGAACACCGCCAGCTGTTTTTCCCCCAACCCAGAATCATG
TCGGGTTTTAGCTATCCGTGCTCAGGCCAAGACTGAACCATGTTCCTCCAACCCACAATTAAAA
CCTGTACTCAGCCGTCCAGATTTTTGTCCTGTAACGGGCATGGCAAATATCCGACATCGTGGCA
AAGTCCTGTACTTAAGTTGTTCCATTAGGCAGGCTTGCCACAGCTTGGACCTCAGCTGGGACAG
AGAGAGATGACATGATACAGCTGGGGCTGGAGTTGGTGTGGCCCTTGGGGAAGATTGGGAGAGA
AGCACCCACTTACATTCCAGCACAAACTTGTTTTTCAAATAGTCATATTCGTTAAGATTTCCCC
GAAACCACTCTTCTCGCTCCTGTGTGATTTGTCCTCAGGGTAACAAGTGCCCTCTCTCTCTTTT
TTCACCCCGCTATGTGTAACCAGGACCCAGTGTACCCGCGAGTTCTAGTGGTGGTGAACAGACA
GTAAGATGCCTCTGCCTGGTGGAGGTTTGACTCCAAGGTTAACAGCACTGTTCCTGGAGACAAC
GTCCTGGTAACTTTATCAGCGGTGTGGCGGAAGGAAGGATTCTTCTGCTTCCACTTCTCTTACA
AACCCTCCATGTCCTCACCTGTACAATGGGAGTGGACTGTGGTGCGGATTGAGTAATTTCATGT
CTGGTAAACCTAGCAACAAAAGGAATCTATTTATTGTCTGGGACGATCCCGGGGGAAACCCGAG
AGAGAGGCCACAGCTCATTGCGAGAAGGGACAGTTCTGTGGTACCGCACCGCGCCTGGTCCCAC
ACACGTTGACTGTGTCTCTGCGATACAGCCTATTCTCTACCTTCTGTGAGTGGTTGTCACTCTC
TTCTTCAGTTTTCTAGTTGGTTCCAACAAGAGGAGGGTTATCCCAGGGACAGAGACTGGATGAG
CAAAGGAGGGACTTTTCCGGAGCGCCGTGAGGTCGCAAGCCCGGATCAGAGTCCGGATTTCCGG
TGGCGTTCTGGCCTGTGGCTCCCACGCTCCCCATAGCGGTGGGTGGATGCCACCCGGGGACAGA
CAGACCAGGGTTTAATGGGTGCGCGGGTCCCAGTGTCAGGTAGCTCCAAGCTGCATCCGTAGTA
TCTTCTCATCGCCCTCGCCCTTGCCTGGCTACACCCCACTTTCCCAGGGACTCCAGGTCGCTAC
GAACTCTGCCACTCTGCGGGGTTCCCCTGAGAGTGGCCTGGTTTCAGCCCGCCCCACTCACACA
TCTCAGAAGTCTAGTGGCCCCCGCAACTCCCCAGAAGCACGCAGAGACAGAGGGCCTTTGAGCC
TCGGGCGCTTTGTCGCCCATTTCCCGTTCCTCCCACCACTGAATGAAGAGCCTGCTCTCCCACT
GGGGTCGCAGTTACCTCTGGCAAGACAGCTAAGAAAGGAAAGCATCCAACGGAGTGGAAGCAGT
ATGAAGGAAGAGCCGCTGGGCAGCGGCATGAACGCGGTGCGGACGTGGATGCAGGGCGCCGGGG
TGCTGGACGCCAACACAGCGGCGCAGAGCGGGGTGGGTCTGGCCCGGGCTCACTTTGAGAAGCA
GCCGCCTTCTAACCTGCGGAAATCCAACTTCTTCCACTTCGTCCTGGCCCTCTACGACAGACAG
GGCCAGCCCGTGGAGATTGAGAGGACGGCCTTTGTGGGGTTCGTGGAGAAGGAAAAAGAAGCCA
ACAGCGAAAAGACCAATAATGGGATCCACTACCGGCTCCAGCTCCTCTACAGCAATGGGATAAG
GACCGAACAGGATTTCTACGTGCGCCTCATCGACTCCATGACAAAACAAGCCATAGTGTATGAA
GGCCAAGACAAGAACCCGGAAATGTGCCGAGTACTGCTCACACACGAGATCATGTGCAGCCGCT
GTTGTGACAAGAAAAGCTGTGGCAACCGAAATGAGACTCCCTCAGATCCAGTGATAATTGACAG
ATTCTTCCTGAAGTTTTTCCTTAAGTGTAACCAAAATTGCCTAAAGAATGCGGGGAACCCACGT
GACATGCGGAGATTCCAGGTCGTGGTGTCTACCACAGTCAACGTGGATGGCCATGTCCTGGCAG
TCTCTGATAACATGTTTGTCCACAATAACTCCAAACACGGGCGGAGGGCTAGGAGGCTTGACCC
CTCGGAAGGTACGCCCTCTTATCTGGAACATGCAGCTACTCCCTGTATCAAAGCCATCAGCCCG
AGTGAAGGATGGACGACGGGAGGCGCGACTGTGATCATCATAGGGGACAATTTCTTTGATGGGT
TACAGGTCATATTCGGTACCATGCTGGTCTGGAGTGAGTTGATAACTCCTCATGCCATCCGTGT
TCAGACACCTCCTCGGCACATCCCTGGTGTTGTGGAAGTCACATTGTCCTACAAGTCCAAGCAG
TTCTGCAAAGGGACACCAGGCAGATTCATCTATACAGCACTCAATGAACCCACCATCGACTATG
GTTTCCAGAGGTTACAGAAGGTCATTCCCCGGCATCCTGGTGACCCAGAGCGTTTGCCAAAGGA
AGTGATCCTTAAAAGGGCTGCAGATCTGGTTGAAGCCCTGTATGGGATGCCCCACAACAACCAG
GAGATTATCCTGAAGAGAGCTGCCGACATTGCTGAGGCTCTGTACAGTGTCCCTCGAAACCACA
ACCAGCTCCCGGCCCTCGCTAACACTTCGGTCCACGCAGGGATGATGGGCGTGAACTCCTTCAG
TGGACAACTGGCTGTGAATGTCTCTGAGGCATCACAAGCCACCAATCAAGGTTTCACCCGCAAC
TCAAGCAGTGTGTCACCACATGGATATGTGCCTAGCACCACCCCACAGCAGACCAACTATAACT
CTGTCACCACAAGCATGAACGGCTACGGCTCTGCCGCCATGTCCAATTTGGGCGGCTCCCCAAC
CTTCCTCAATGGCTCAGCTGCCAACTCACCCTACGCCATTGTGCCATCCAGCCCCACCATGGCC
TCATCTACAAGCCTCCCCTCCAACTGCAGCAGCTCCTCGGGCATCTTCTCCTTCTCACCAGCCA
ACATGGTCTCTGCTGTGAAACAGAAGAGTGCTTTCGCACCAGTTGTCAGACCCCAGACCTCCCC
GCCTCCCACCTGCACCAGCACCAACGGGAACAGCCTGCAAGCGATTTCTGGCATGATTGTCCCT
CCCATGTGAAAGAATTGCCTTGAAGAATTTTATTAATGAAGAGGTTGGATCCTGCTACGAAAGT
AATCTGACATGAGTCCCAGAGTGGAACTTTTAACTCAGGCCTTTTTAAGAGGAAATCACACAAT
AACTGCAGATTTTTAAACAAAGTCACCGACCTTGCAAATACTGAGATTGGAAAGGGGACCTGCC
AGAGCGGGGTGTTGGATAGAGTCGGACTCCCCGAGTGTCTGGGGGATATATTTATTCTGTATTG
ATAAAAAAAAGAACAAGCCCACCTTTTCTTTTTTTCTTTCTCTTTTCTTTCTTTAAGCTTAACT
CTGCAACCATTTGTCTTTTGTAAACCATTAAGCTACACACAAGGGCCACTCTAAATAAGACTCC
ATGTTTTAATTTATGATGTTTTTAAAGCTATGTAAGGGGAGAATGAAGTGGTGATATTTACAAA
AAAAAAAGAAAAAAAAGAAAAAAGAAAAAAAGCTAAAAAGGAAAAAAAAAAGAAAAACAGGGAA
AAATAAATTAAAAAAAAAAAAAAGCTCGTAAGGGACAGAATAGGAGAATGCCAGTTAGATTTTT
TAGAAAACTAAGGGTCGGCTTCTGCGCCTTAAAGCATATCAGTGGTAATTAGCTCAGACAGTGC
ATTTCCAATATCTAACTTAACACGCCATCCCTTAGCAGTGCAAGCTTCTCTCTCTCTTTTGTAT
GGTTGTCTTAAGTAACTGTGTAAATAGGTGTAGCCTGGAAAGTTACCAAGCAACATACATGATC
ATATTTTCCCTTGTACTCAGAAAATCCAGTGCCTCTAGACAGATTGTTTAAAAACGAACAAAAG
AACAAAAAACAAAAAAACAAAACAAAACAAAAACCCTGCATCTTTAAACCCGATCTTATTCTTT
TACTTAACGCCATCTTCTCCCAAAGCCAGCGGCCTCTGAAGGTGGAGCGGCAGGTGTACCGAGC
GAGACTCTCCTAAACTTCACGGGACAGGGTCCAGGCACAGAATCCCACATACGCCCTCCAGTTT
ACCAAGCCAAAATCTTGCTCACTCCACCATCAAGAGAACCAAGCTTACTCATGCTGGAGTCCTA
AATATTAACTCTGTATCGGGGCCCAAAAACCCAAACAAAGCAAACCGACAAAGGTATGCTATTC
CGGGCTCCCAAATCGCACAGGGGTCTGTACCAGCAAGACCCCCTCATGATTGGAAAGTTCTACA
TTCAGTCAACAGGTAAAATGCTTTGGAGTTCAGTGTGAAAGGAAACTGGGAGAGAGGAAGGGAA
GGTTGAGGCTTCAAACTCAGCTTTCCATGGGAAAGTTTGCTTTCAACTGGGAAGTGTTCTTAAA
GAATCCATAGCAAAGATCCAGCCAGCAAGGCTCTGAGGGGGCGTGTTCCTGCTGACCTTTGCCC
TTCTGTTTCTGTACGTAGTTATAAATACTGTAGATTTCTTTTGTGATTTTTTTTTTGCCAAAGT
TGTTGTTTTATTTATACATTTTAATGTCTTAAGGTGATTTTCGATCTCACACACAAAGGATTTT
GCCGCATATTTTGCAAATAAATAAAAAGCGCGCTACCTTTAGCTTGCACATACTTGCAAAGTTA
ATTCAAAGGCTTTCTGTTTGTTTGTTTTAATGGGGATTTTGTAAAATATCCATATAAATAATGT
ATTTATCTCTGGAATTTGTACATTGCTTTTCTCTCCTTCCTCCAACCCCCCCCCAGCCCCAGTT
TATTTTGTGTGTGTGTTTGCTTTGTGAACAGTGCGCGCATATAGTTTCGTCGCCTATGGTTGTA
TTAACTGTTTCAATGTGATTTTTAAACAATTCATTTATAGGTATTTTTAGTATTGTTTTAAACC
ATGCTTCATTTTTTTTTATTTCCACCCAAAAGCCATTGTCTATTTTTGTATTATTTGTAAGTTA
AGAAGTTTTTTCCAATATATGGCAAAAAAAATTAGTAGCATATTATTCTTGTAGTATTTAGTTC
TGTAGATTTAAAAATAATGTATCCTTTGCTTTGGAAGCATACAAAAAATGCTGTTTTACTCTAT
TAATATGCATGGAATCTCTCCCTTTGGAGTGACGCATTTTGTGCATTAAATTTGGGGGAGAAAC
TTCATAGAGATCAATGGACATACTTTCTTTCTTAAGTCTGCTTGTATATTCTCTGTCTTTCACA
TAAATATAAACCAGCAGATTGGATGCCTTAACAATGCAAGTCACACCCATTTCACCTGTACATT
GTACTGTGCACCCCCACCGTCAGCCATCACTCACATCTAAGAAAAAAAACAAAGAAAAAGAAGA
AAAAAAAGAGAAATGGAAAAGCACAAACGAACTGTTTTGTAACTTTAAGACAATGTTACTTTTT
CTAGTAGAGCAAGTGAACATTAACGATGCTGCGACTGTGCATGCCCCGTATGGATTTCAACGGT
TTTCACTAGACTGTCAGAGTGCGGATTTTTATGGGTTGGGGAGGGCAGGGGAGGGGAGTTGGGA
GGGGGGACTGGTAGGGAAGGGGAGGGAGGAAAGCCGATTTTTCATGGTGAGAAATAATAATAAT
GACAACTGATGATAATAATAATAATAATAAAAAGAAACTGGAAAAAATATAA

hide sequence

RefSeq Acc Id:

XM_017596958 ⟹ XP_017452447

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	29,099,896 - 29,489,142 (+)	NCBI
Rnor_6.0	10	23,659,431 - 24,051,627 (+)	NCBI

Sequence:

show sequence

CTTTCCTTCCTTTCCCTCCCTCGCTCTCATCTCTCTTCCCTACTTCCCAGTCTCCCTGCGGTTG
TGATGGAAGTTGGCTTAAGCCCCCTTCGCGTTTAACAGAAAGAACTCTGTGTGCCAAATAACCA
GCTAATCAGAGAAGGCAACATCCTTGCTGTGTTGGTAAGGAAAAATAAAGCTACTTTGCGGAGC
AGGAGAGGGGTTTGGGGATCTGAAGATATTTAGAGTCTCACCCTGGCACAGTCCCAGAGACCTA
TTCATTCTTAAGAGACTGCTGAAGTGACCGAGTAAGAACCGCGCCCAACAGCGTTTGTGTCTGG
GCTAACCCCAGAATCAGAGGCATTTCAGAGGCCTGCTAAGGACCGAGTCTGGATCACACAATCC
CTTGTGCGATCTACTAAAGTATTCGTTGGGGCAATAGGCTTCTCTACCTCTCCTGACACGGAGA
CAGTGTGTCTTCCGAGGGCCCACAAGTCTCGATCTTGCTCGCACACAAAGTTCAACCCGCTACC
CTTGCTTCAGAGAGAAGAGCTGGGCACCTGGGATGGGCATCCTGGCTTTTCTGCCTGGTCAGTC
CTTTTTCCTCCAAGTTTGCCCCCGAAGTCCTAGGACAGCCGAGCAAGGGACTAGGCGTCTGCCC
AGGGAGAACGCAGTCAGTACGCCTCCGTCGCGCTCTGGGCGCTGAGGGGATGCTCAGGAACTGC
CATGGCGCATACCCCTTCGGCTCAGGATACCTCCATCTCCTTCCCTCTGCCCCCTTTCTTGCTC
TTTACGGCCGAGCTCCCTCCAGCCTAGATGCTGGTGCTCAGAGCTCCCTCGTTCGCCACTTTGC
CGGGAACTTTGGCGGCTCCCCTGCGCCACCCAGAGAAGGATGTTAATGAGGGAGTGTGGCCAGG
CTCTGTGAACAAGCCAGCTCGGGAGCTGCGATTGGCTGCGATAAGGCGGAAGGATGACGTTATG
CAAAGAAGGGGCGTGTCCAGGCTGCGAGGGCCCCGCCTCCTTCCCTTTGGGGTTAGTGTGCCTG
TGTTTAGCTCTAGGGAGAGTCAAACTGGATTCCACAGGGAGAGCCTGCAAATCACTTCTATTTT
AGCAAGGAGAAAACAGAATCTCCATCCAGCAGGGTCCACCCCTCTCTTTCTCCCTCTCCTCTCT
TTTTCTATCTCTTTCCCTCCCCCCCTTCCTCTTTCCCTCTCTCTCCCCTTCCCCCCACCCTCTC
CGGTGTATCTGTCTACAGCAACCAGCGTCCTCATCTACACGCACGGAAAGGAAAGAAACATCTT
TGGTTGAGAGAGGAGGAGGAAAAAAAGAGAGAGAGAAAAAAACTTGCCTGGTTGTGGAAAATGA
CACTTCAAGTAGCCAAGCCGGCTTCGAGAGTCGTATCTATTGTTTCTTAAATTGTCATCAGGGT
GGTTTTTTTCTTCCTGCTTCTTCAAGTGAAGGTACCGCTACAAAAGGAAACTCCAGCCCCTCCT
GTTCTCCAACGGCCTGTGATTCTCAAAAAGAAAAAAAAAGCAAAAAAAAAAAAAAAAAAGCAAA
AAAAAAAAAAAAAGGAAAAAAAAAGCACCCAAACTCAAAACCAACCAACCAAACAACCCCCAAC
AGCCAAGCATACATCTCTGTTTTTTCTTAATTTTGGTCTTTTCGTTGGATTTTCCCTTTCTTTT
TTTTCCCTCGCCCCCCCCTCCTTGTTATCGCTCAGTTTTGAGCGAAGGTTTACATTTTTAAAAA
TTTTGCTTTTCAGCCCGCCTTGATGTAGCGCGAGTTTCATCGACTCAAAAAAAAAAAATCTGTG
GTTGGAGTTTTTTTTTTCCTTTTTTTTTTTTAATATTTTCAAAGGGGAGGAGATTTTCCACAAG
AAAAGGTTGTTTTCATGTTTGGGATCCAGGAAAGCATCCAACGGAGTGGAAGCAGTATGAAGGA
AGAGCCGCTGGGCAGCGGCATGAACGCGGTGCGGACGTGGATGCAGGGCGCCGGGGTGCTGGAC
GCCAACACAGCGGCGCAGAGCGGGGTGGGTCTGGCCCGGGCTCACTTTGAGAAGCAGCCGCCTT
CTAACCTGCGGAAATCCAACTTCTTCCACTTCGTCCTGGCCCTCTACGACAGACAGGGCCAGCC
CGTGGAGATTGAGAGGACGGCCTTTGTGGGGTTCGTGGAGAAGGAAAAAGAAGCCAACAGCGAA
AAGACCAATAATGGGATCCACTACCGGCTCCAGCTCCTCTACAGCAATGGGATAAGGACCGAAC
AGGATTTCTACGTGCGCCTCATCGACTCCATGACAAAACAAGCCATAGTGTATGAAGGCCAAGA
CAAGAACCCGGAAATGTGCCGAGTACTGCTCACACACGAGATCATGTGCAGCCGCTGTTGTGAC
AAGAAAAGCTGTGGCAACCGAAATGAGACTCCCTCAGATCCAGTGATAATTGACAGATTCTTCC
TGAAGTTTTTCCTTAAGTGTAACCAAAATTGCCTAAAGAATGCGGGGAACCCACGTGACATGCG
GAGATTCCAGGTCGTGGTGTCTACCACAGTCAACGTGGATGGCCATGTCCTGGCAGTCTCTGAT
AACATGTTTGTCCACAATAACTCCAAACACGGGCGGAGGGCTAGGAGGCTTGACCCCTCGGAAG
CTACTCCCTGTATCAAAGCCATCAGCCCGAGTGAAGGATGGACGACGGGAGGCGCGACTGTGAT
CATCATAGGGGACAATTTCTTTGATGGGTTACAGGTCATATTCGGTACCATGCTGGTCTGGAGT
GAGTTGATAACTCCTCATGCCATCCGTGTTCAGACACCTCCTCGGCACATCCCTGGTGTTGTGG
AAGTCACATTGTCCTACAAGTCCAAGCAGTTCTGCAAAGGGACACCAGGCAGATTCATCTATAC
AGCACTCAATGAACCCACCATCGACTATGGTTTCCAGAGGTTACAGAAGGTCATTCCCCGGCAT
CCTGGTGACCCAGAGCGTTTGCCAAAGGAAGTGATCCTTAAAAGGGCTGCAGATCTGGTTGAAG
CCCTGTATGGGATGCCCCACAACAACCAGGAGATTATCCTGAAGAGAGCTGCCGACATTGCTGA
GGCTCTGTACAGTGTCCCTCGAAACCACAACCAGCTCCCGGCCCTCGCTAACACTTCGGTCCAC
GCAGGGATGATGGGCGTGAACTCCTTCAGTGGACAACTGGCTGTGAATGTCTCTGAGGCATCAC
AAGCCACCAATCAAGGTTTCACCCGCAACTCAAGCAGTGTGTCACCACATGGATATGTGCCTAG
CACCACCCCACAGCAGACCAACTATAACTCTGTCACCACAAGCATGAACGGCTACGGCTCTGCC
GCCATGTCCAATTTGGGCGGCTCCCCAACCTTCCTCAATGGCTCAGCTGCCAACTCACCCTACG
CCATTGTGCCATCCAGCCCCACCATGGCCTCATCTACAAGCCTCCCCTCCAACTGCAGCAGCTC
CTCGGGCATCTTCTCCTTCTCACCAGCCAACATGGTCTCTGCTGTGAAACAGAAGAGTGCTTTC
GCACCAGTTGTCAGACCCCAGACCTCCCCGCCTCCCACCTGCACCAGCACCAACGGGAACAGCC
TGCAAGCGATTTCTGGCATGATTGTCCCTCCCATGTGAAAGAATTGCCTTGAAGAATTTTATTA
ATGAAGAGGTTGGATCCTGCTACGAAAGTAATCTGACATGAGTCCCAGAGTGGAACTTTTAACT
CAGGCCTTTTTAAGAGGAAATCACACAATAACTGCAGATTTTTAAACAAAGTCACCGACCTTGC
AAATACTGAGATTGGAAAGGGGACCTGCCAGAGCGGGGTGTTGGATAGAGTCGGACTCCCCGAG
TGTCTGGGGGATATATTTATTCTGTATTGATAAAAAAAAGAACAAGCCCACCTTTTCTTTTTTT
CTTTCTCTTTTCTTTCTTTAAGCTTAACTCTGCAACCATTTGTCTTTTGTAAACCATTAAGCTA
CACACAAGGGCCACTCTAAATAAGACTCCATGTTTTAATTTATGATGTTTTTAAAGCTATGTAA
GGGGAGAATGAAGTGGTGATATTTACAAAAAAAAAAGAAAAAAAAGAAAAAAGAAAAAAAGCTA
AAAAGGAAAAAAAAAAGAAAAACAGGGAAAAATAAATTAAAAAAAAAAAAAAGCTCGTAAGGGA
CAGAATAGGAGAATGCCAGTTAGATTTTTTAGAAAACTAAGGGTCGGCTTCTGCGCCTTAAAGC
ATATCAGTGGTAATTAGCTCAGACAGTGCATTTCCAATATCTAACTTAACACGCCATCCCTTAG
CAGTGCAAGCTTCTCTCTCTCTTTTGTATGGTTGTCTTAAGTAACTGTGTAAATAGGTGTAGCC
TGGAAAGTTACCAAGCAACATACATGATCATATTTTCCCTTGTACTCAGAAAATCCAGTGCCTC
TAGACAGATTGTTTAAAAACGAACAAAAGAACAAAAAACAAAAAAACAAAACAAAACAAAAACC
CTGCATCTTTAAACCCGATCTTATTCTTTTACTTAACGCCATCTTCTCCCAAAGCCAGCGGCCT
CTGAAGGTGGAGCGGCAGGTGTACCGAGCGAGACTCTCCTAAACTTCACGGGACAGGGTCCAGG
CACAGAATCCCACATACGCCCTCCAGTTTACCAAGCCAAAATCTTGCTCACTCCACCATCAAGA
GAACCAAGCTTACTCATGCTGGAGTCCTAAATATTAACTCTGTATCGGGGCCCAAAAACCCAAA
CAAAGCAAACCGACAAAGGTATGCTATTCCGGGCTCCCAAATCGCACAGGGGTCTGTACCAGCA
AGACCCCCTCATGATTGGAAAGTTCTACATTCAGTCAACAGGTAAAATGCTTTGGAGTTCAGTG
TGAAAGGAAACTGGGAGAGAGGAAGGGAAGGTTGAGGCTTCAAACTCAGCTTTCCATGGGAAAG
TTTGCTTTCAACTGGGAAGTGTTCTTAAAGAATCCATAGCAAAGATCCAGCCAGCAAGGCTCTG
AGGGGGCGTGTTCCTGCTGACCTTTGCCCTTCTGTTTCTGTACGTAGTTATAAATACTGTAGAT
TTCTTTTGTGATTTTTTTTTTGCCAAAGTTGTTGTTTTATTTATACATTTTAATGTCTTAAGGT
GATTTTCGATCTCACACACAAAGGATTTTGCCGCATATTTTGCAAATAAATAAAAAGCGCGCTA
CCTTTAGCTTGCACATACTTGCAAAGTTAATTCAAAGGCTTTCTGTTTGTTTGTTTTAATGGGG
ATTTTGTAAAATATCCATATAAATAATGTATTTATCTCTGGAATTTGTACATTGCTTTTCTCTC
CTTCCTCCAACCCCCCCCCAGCCCCAGTTTATTTTGTGTGTGTGTTTGCTTTGTGAACAGTGCG
CGCATATAGTTTCGTCGCCTATGGTTGTATTAACTGTTTCAATGTGATTTTTAAACAATTCATT
TATAGGTATTTTTAGTATTGTTTTAAACCATGCTTCATTTTTTTTTATTTCCACCCAAAAGCCA
TTGTCTATTTTTGTATTATTTGTAAGTTAAGAAGTTTTTTCCAATATATGGCAAAAAAAATTAG
TAGCATATTATTCTTGTAGTATTTAGTTCTGTAGATTTAAAAATAATGTATCCTTTGCTTTGGA
AGCATACAAAAAATGCTGTTTTACTCTATTAATATGCATGGAATCTCTCCCTTTGGAGTGACGC
ATTTTGTGCATTAAATTTGGGGGAGAAACTTCATAGAGATCAATGGACATACTTTCTTTCTTAA
GTCTGCTTGTATATTCTCTGTCTTTCACATAAATATAAACCAGCAGATTGGATGCCTTAACAAT
GCAAGTCACACCCATTTCACCTGTACATTGTACTGTGCACCCCCACCGTCAGCCATCACTCACA
TCTAAGAAAAAAAACAAAGAAAAAGAAGAAAAAAAAGAGAAATGGAAAAGCACAAACGAACTGT
TTTGTAACTTTAAGACAATGTTACTTTTTCTAGTAGAGCAAGTGAACATTAACGATGCTGCGAC
TGTGCATGCCCCGTATGGATTTCAACGGTTTTCACTAGACTGTCAGAGTGCGGATTTTTATGGG
TTGGGGAGGGCAGGGGAGGGGAGTTGGGAGGGGGGACTGGTAGGGAAGGGGAGGGAGGAAAGCC
GATTTTTCATGGTGAGAAATAATAATAATGACAACTGATGATAATAATAATAATAATAAAAAGA
AACTGGAAAAAATATAA

hide sequence

RefSeq Acc Id:

XM_017596960 ⟹ XP_017452449

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	29,101,467 - 29,489,142 (+)	NCBI
Rnor_6.0	10	23,661,990 - 24,051,627 (+)	NCBI

Sequence:

show sequence

TTCTCTTTCTTTCCTTCTCAGTTTCACCCTTCTTTTTTCTTTACTCTTTCCTCACCCGGCTGTC
TCCTCCCTATATTCTCTCCCCATTTCTCTCCTATCTGGTTCTTTACTCTCCCCTCTCTCCACCC
CTTAGCCTTCAGTTTTTCTCAGTCTGCCTGTAGAGGAGTGATTTCCAACTTTAATTCTCACATC
TCCTAAAAGCCTTTCTCATCCCCTGTCACCTTGGACTCCTCCAGTCCCTCTCCAGCTCTCCAGA
CCCTACACTGAGTGGCTTGGAAGCCATGCTCTTGGAGGCCAACTTGAGGAACTTCCCTGGACAC
ACCCAGTGCCCTGTCCAGGGGCTCCTGGTCCCAAGTGAGAAATGCGGGGTGGGTCTGGCCCGGG
CTCACTTTGAGAAGCAGCCGCCTTCTAACCTGCGGAAATCCAACTTCTTCCACTTCGTCCTGGC
CCTCTACGACAGACAGGGCCAGCCCGTGGAGATTGAGAGGACGGCCTTTGTGGGGTTCGTGGAG
AAGGAAAAAGAAGCCAACAGCGAAAAGACCAATAATGGGATCCACTACCGGCTCCAGCTCCTCT
ACAGCAATGGGATAAGGACCGAACAGGATTTCTACGTGCGCCTCATCGACTCCATGACAAAACA
AGCCATAGTGTATGAAGGCCAAGACAAGAACCCGGAAATGTGCCGAGTACTGCTCACACACGAG
ATCATGTGCAGCCGCTGTTGTGACAAGAAAAGCTGTGGCAACCGAAATGAGACTCCCTCAGATC
CAGTGATAATTGACAGATTCTTCCTGAAGTTTTTCCTTAAGTGTAACCAAAATTGCCTAAAGAA
TGCGGGGAACCCACGTGACATGCGGAGATTCCAGGTCGTGGTGTCTACCACAGTCAACGTGGAT
GGCCATGTCCTGGCAGTCTCTGATAACATGTTTGTCCACAATAACTCCAAACACGGGCGGAGGG
CTAGGAGGCTTGACCCCTCGGAAGGTACGCCCTCTTATCTGGAACATGCAGCTACTCCCTGTAT
CAAAGCCATCAGCCCGAGTGAAGGATGGACGACGGGAGGCGCGACTGTGATCATCATAGGGGAC
AATTTCTTTGATGGGTTACAGGTCATATTCGGTACCATGCTGGTCTGGAGTGAGTTGATAACTC
CTCATGCCATCCGTGTTCAGACACCTCCTCGGCACATCCCTGGTGTTGTGGAAGTCACATTGTC
CTACAAGTCCAAGCAGTTCTGCAAAGGGACACCAGGCAGATTCATCTATACAGCACTCAATGAA
CCCACCATCGACTATGGTTTCCAGAGGTTACAGAAGGTCATTCCCCGGCATCCTGGTGACCCAG
AGCGTTTGCCAAAGGAAGTGATCCTTAAAAGGGCTGCAGATCTGGTTGAAGCCCTGTATGGGAT
GCCCCACAACAACCAGGAGATTATCCTGAAGAGAGCTGCCGACATTGCTGAGGCTCTGTACAGT
GTCCCTCGAAACCACAACCAGCTCCCGGCCCTCGCTAACACTTCGGTCCACGCAGGGATGATGG
GCGTGAACTCCTTCAGTGGACAACTGGCTGTGAATGTCTCTGAGGCATCACAAGCCACCAATCA
AGGTTTCACCCGCAACTCAAGCAGTGTGTCACCACATGGATATGTGCCTAGCACCACCCCACAG
CAGACCAACTATAACTCTGTCACCACAAGCATGAACGGCTACGGCTCTGCCGCCATGTCCAATT
TGGGCGGCTCCCCAACCTTCCTCAATGGCTCAGCTGCCAACTCACCCTACGCCATTGTGCCATC
CAGCCCCACCATGGCCTCATCTACAAGCCTCCCCTCCAACTGCAGCAGCTCCTCGGGCATCTTC
TCCTTCTCACCAGCCAACATGGTCTCTGCTGTGAAACAGAAGAGTGCTTTCGCACCAGTTGTCA
GACCCCAGACCTCCCCGCCTCCCACCTGCACCAGCACCAACGGGAACAGCCTGCAAGCGATTTC
TGGCATGATTGTCCCTCCCATGTGAAAGAATTGCCTTGAAGAATTTTATTAATGAAGAGGTTGG
ATCCTGCTACGAAAGTAATCTGACATGAGTCCCAGAGTGGAACTTTTAACTCAGGCCTTTTTAA
GAGGAAATCACACAATAACTGCAGATTTTTAAACAAAGTCACCGACCTTGCAAATACTGAGATT
GGAAAGGGGACCTGCCAGAGCGGGGTGTTGGATAGAGTCGGACTCCCCGAGTGTCTGGGGGATA
TATTTATTCTGTATTGATAAAAAAAAGAACAAGCCCACCTTTTCTTTTTTTCTTTCTCTTTTCT
TTCTTTAAGCTTAACTCTGCAACCATTTGTCTTTTGTAAACCATTAAGCTACACACAAGGGCCA
CTCTAAATAAGACTCCATGTTTTAATTTATGATGTTTTTAAAGCTATGTAAGGGGAGAATGAAG
TGGTGATATTTACAAAAAAAAAAGAAAAAAAAGAAAAAAGAAAAAAAGCTAAAAAGGAAAAAAA
AAAGAAAAACAGGGAAAAATAAATTAAAAAAAAAAAAAAGCTCGTAAGGGACAGAATAGGAGAA
TGCCAGTTAGATTTTTTAGAAAACTAAGGGTCGGCTTCTGCGCCTTAAAGCATATCAGTGGTAA
TTAGCTCAGACAGTGCATTTCCAATATCTAACTTAACACGCCATCCCTTAGCAGTGCAAGCTTC
TCTCTCTCTTTTGTATGGTTGTCTTAAGTAACTGTGTAAATAGGTGTAGCCTGGAAAGTTACCA
AGCAACATACATGATCATATTTTCCCTTGTACTCAGAAAATCCAGTGCCTCTAGACAGATTGTT
TAAAAACGAACAAAAGAACAAAAAACAAAAAAACAAAACAAAACAAAAACCCTGCATCTTTAAA
CCCGATCTTATTCTTTTACTTAACGCCATCTTCTCCCAAAGCCAGCGGCCTCTGAAGGTGGAGC
GGCAGGTGTACCGAGCGAGACTCTCCTAAACTTCACGGGACAGGGTCCAGGCACAGAATCCCAC
ATACGCCCTCCAGTTTACCAAGCCAAAATCTTGCTCACTCCACCATCAAGAGAACCAAGCTTAC
TCATGCTGGAGTCCTAAATATTAACTCTGTATCGGGGCCCAAAAACCCAAACAAAGCAAACCGA
CAAAGGTATGCTATTCCGGGCTCCCAAATCGCACAGGGGTCTGTACCAGCAAGACCCCCTCATG
ATTGGAAAGTTCTACATTCAGTCAACAGGTAAAATGCTTTGGAGTTCAGTGTGAAAGGAAACTG
GGAGAGAGGAAGGGAAGGTTGAGGCTTCAAACTCAGCTTTCCATGGGAAAGTTTGCTTTCAACT
GGGAAGTGTTCTTAAAGAATCCATAGCAAAGATCCAGCCAGCAAGGCTCTGAGGGGGCGTGTTC
CTGCTGACCTTTGCCCTTCTGTTTCTGTACGTAGTTATAAATACTGTAGATTTCTTTTGTGATT
TTTTTTTTGCCAAAGTTGTTGTTTTATTTATACATTTTAATGTCTTAAGGTGATTTTCGATCTC
ACACACAAAGGATTTTGCCGCATATTTTGCAAATAAATAAAAAGCGCGCTACCTTTAGCTTGCA
CATACTTGCAAAGTTAATTCAAAGGCTTTCTGTTTGTTTGTTTTAATGGGGATTTTGTAAAATA
TCCATATAAATAATGTATTTATCTCTGGAATTTGTACATTGCTTTTCTCTCCTTCCTCCAACCC
CCCCCCAGCCCCAGTTTATTTTGTGTGTGTGTTTGCTTTGTGAACAGTGCGCGCATATAGTTTC
GTCGCCTATGGTTGTATTAACTGTTTCAATGTGATTTTTAAACAATTCATTTATAGGTATTTTT
AGTATTGTTTTAAACCATGCTTCATTTTTTTTTATTTCCACCCAAAAGCCATTGTCTATTTTTG
TATTATTTGTAAGTTAAGAAGTTTTTTCCAATATATGGCAAAAAAAATTAGTAGCATATTATTC
TTGTAGTATTTAGTTCTGTAGATTTAAAAATAATGTATCCTTTGCTTTGGAAGCATACAAAAAA
TGCTGTTTTACTCTATTAATATGCATGGAATCTCTCCCTTTGGAGTGACGCATTTTGTGCATTA
AATTTGGGGGAGAAACTTCATAGAGATCAATGGACATACTTTCTTTCTTAAGTCTGCTTGTATA
TTCTCTGTCTTTCACATAAATATAAACCAGCAGATTGGATGCCTTAACAATGCAAGTCACACCC
ATTTCACCTGTACATTGTACTGTGCACCCCCACCGTCAGCCATCACTCACATCTAAGAAAAAAA
ACAAAGAAAAAGAAGAAAAAAAAGAGAAATGGAAAAGCACAAACGAACTGTTTTGTAACTTTAA
GACAATGTTACTTTTTCTAGTAGAGCAAGTGAACATTAACGATGCTGCGACTGTGCATGCCCCG
TATGGATTTCAACGGTTTTCACTAGACTGTCAGAGTGCGGATTTTTATGGGTTGGGGAGGGCAG
GGGAGGGGAGTTGGGAGGGGGGACTGGTAGGGAAGGGGAGGGAGGAAAGCCGATTTTTCATGGT
GAGAAATAATAATAATGACAACTGATGATAATAATAATAATAATAAAAAGAAACTGGAAAAAAT
ATAA

hide sequence

RefSeq Acc Id:

XM_017596962 ⟹ XP_017452451

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	29,103,861 - 29,489,142 (+)	NCBI
Rnor_6.0	10	23,664,303 - 24,051,627 (+)	NCBI

Sequence:

show sequence

CTCCTGTCGGGTCGGTGCCAGCACCCTGGGGCTCAGGGTCAGGGCAGGGGGCTCACGGAGCTCC
AGGTGGACGAAAGCCCCCCAGCGAAGCTCAGCCGTCAGCCACCCTCCAGGGATAAGGACCGAAC
AGGATTTCTACGTGCGCCTCATCGACTCCATGACAAAACAAGCCATAGTGTATGAAGGCCAAGA
CAAGAACCCGGAAATGTGCCGAGTACTGCTCACACACGAGATCATGTGCAGCCGCTGTTGTGAC
AAGAAAAGCTGTGGCAACCGAAATGAGACTCCCTCAGATCCAGTGATAATTGACAGATTCTTCC
TGAAGTTTTTCCTTAAGTGTAACCAAAATTGCCTAAAGAATGCGGGGAACCCACGTGACATGCG
GAGATTCCAGGTCGTGGTGTCTACCACAGTCAACGTGGATGGCCATGTCCTGGCAGTCTCTGAT
AACATGTTTGTCCACAATAACTCCAAACACGGGCGGAGGGCTAGGAGGCTTGACCCCTCGGAAG
GTACGCCCTCTTATCTGGAACATGCAGCTACTCCCTGTATCAAAGCCATCAGCCCGAGTGAAGG
ATGGACGACGGGAGGCGCGACTGTGATCATCATAGGGGACAATTTCTTTGATGGGTTACAGGTC
ATATTCGGTACCATGCTGGTCTGGAGTGAGTTGATAACTCCTCATGCCATCCGTGTTCAGACAC
CTCCTCGGCACATCCCTGGTGTTGTGGAAGTCACATTGTCCTACAAGTCCAAGCAGTTCTGCAA
AGGGACACCAGGCAGATTCATCTATACAGCACTCAATGAACCCACCATCGACTATGGTTTCCAG
AGGTTACAGAAGGTCATTCCCCGGCATCCTGGTGACCCAGAGCGTTTGCCAAAGGAAGTGATCC
TTAAAAGGGCTGCAGATCTGGTTGAAGCCCTGTATGGGATGCCCCACAACAACCAGGAGATTAT
CCTGAAGAGAGCTGCCGACATTGCTGAGGCTCTGTACAGTGTCCCTCGAAACCACAACCAGCTC
CCGGCCCTCGCTAACACTTCGGTCCACGCAGGGATGATGGGCGTGAACTCCTTCAGTGGACAAC
TGGCTGTGAATGTCTCTGAGGCATCACAAGCCACCAATCAAGGTTTCACCCGCAACTCAAGCAG
TGTGTCACCACATGGATATGTGCCTAGCACCACCCCACAGCAGACCAACTATAACTCTGTCACC
ACAAGCATGAACGGCTACGGCTCTGCCGCCATGTCCAATTTGGGCGGCTCCCCAACCTTCCTCA
ATGGCTCAGCTGCCAACTCACCCTACGCCATTGTGCCATCCAGCCCCACCATGGCCTCATCTAC
AAGCCTCCCCTCCAACTGCAGCAGCTCCTCGGGCATCTTCTCCTTCTCACCAGCCAACATGGTC
TCTGCTGTGAAACAGAAGAGTGCTTTCGCACCAGTTGTCAGACCCCAGACCTCCCCGCCTCCCA
CCTGCACCAGCACCAACGGGAACAGCCTGCAAGCGATTTCTGGCATGATTGTCCCTCCCATGTG
AAAGAATTGCCTTGAAGAATTTTATTAATGAAGAGGTTGGATCCTGCTACGAAAGTAATCTGAC
ATGAGTCCCAGAGTGGAACTTTTAACTCAGGCCTTTTTAAGAGGAAATCACACAATAACTGCAG
ATTTTTAAACAAAGTCACCGACCTTGCAAATACTGAGATTGGAAAGGGGACCTGCCAGAGCGGG
GTGTTGGATAGAGTCGGACTCCCCGAGTGTCTGGGGGATATATTTATTCTGTATTGATAAAAAA
AAGAACAAGCCCACCTTTTCTTTTTTTCTTTCTCTTTTCTTTCTTTAAGCTTAACTCTGCAACC
ATTTGTCTTTTGTAAACCATTAAGCTACACACAAGGGCCACTCTAAATAAGACTCCATGTTTTA
ATTTATGATGTTTTTAAAGCTATGTAAGGGGAGAATGAAGTGGTGATATTTACAAAAAAAAAAG
AAAAAAAAGAAAAAAGAAAAAAAGCTAAAAAGGAAAAAAAAAAGAAAAACAGGGAAAAATAAAT
TAAAAAAAAAAAAAAGCTCGTAAGGGACAGAATAGGAGAATGCCAGTTAGATTTTTTAGAAAAC
TAAGGGTCGGCTTCTGCGCCTTAAAGCATATCAGTGGTAATTAGCTCAGACAGTGCATTTCCAA
TATCTAACTTAACACGCCATCCCTTAGCAGTGCAAGCTTCTCTCTCTCTTTTGTATGGTTGTCT
TAAGTAACTGTGTAAATAGGTGTAGCCTGGAAAGTTACCAAGCAACATACATGATCATATTTTC
CCTTGTACTCAGAAAATCCAGTGCCTCTAGACAGATTGTTTAAAAACGAACAAAAGAACAAAAA
ACAAAAAAACAAAACAAAACAAAAACCCTGCATCTTTAAACCCGATCTTATTCTTTTACTTAAC
GCCATCTTCTCCCAAAGCCAGCGGCCTCTGAAGGTGGAGCGGCAGGTGTACCGAGCGAGACTCT
CCTAAACTTCACGGGACAGGGTCCAGGCACAGAATCCCACATACGCCCTCCAGTTTACCAAGCC
AAAATCTTGCTCACTCCACCATCAAGAGAACCAAGCTTACTCATGCTGGAGTCCTAAATATTAA
CTCTGTATCGGGGCCCAAAAACCCAAACAAAGCAAACCGACAAAGGTATGCTATTCCGGGCTCC
CAAATCGCACAGGGGTCTGTACCAGCAAGACCCCCTCATGATTGGAAAGTTCTACATTCAGTCA
ACAGGTAAAATGCTTTGGAGTTCAGTGTGAAAGGAAACTGGGAGAGAGGAAGGGAAGGTTGAGG
CTTCAAACTCAGCTTTCCATGGGAAAGTTTGCTTTCAACTGGGAAGTGTTCTTAAAGAATCCAT
AGCAAAGATCCAGCCAGCAAGGCTCTGAGGGGGCGTGTTCCTGCTGACCTTTGCCCTTCTGTTT
CTGTACGTAGTTATAAATACTGTAGATTTCTTTTGTGATTTTTTTTTTGCCAAAGTTGTTGTTT
TATTTATACATTTTAATGTCTTAAGGTGATTTTCGATCTCACACACAAAGGATTTTGCCGCATA
TTTTGCAAATAAATAAAAAGCGCGCTACCTTTAGCTTGCACATACTTGCAAAGTTAATTCAAAG
GCTTTCTGTTTGTTTGTTTTAATGGGGATTTTGTAAAATATCCATATAAATAATGTATTTATCT
CTGGAATTTGTACATTGCTTTTCTCTCCTTCCTCCAACCCCCCCCCAGCCCCAGTTTATTTTGT
GTGTGTGTTTGCTTTGTGAACAGTGCGCGCATATAGTTTCGTCGCCTATGGTTGTATTAACTGT
TTCAATGTGATTTTTAAACAATTCATTTATAGGTATTTTTAGTATTGTTTTAAACCATGCTTCA
TTTTTTTTTATTTCCACCCAAAAGCCATTGTCTATTTTTGTATTATTTGTAAGTTAAGAAGTTT
TTTCCAATATATGGCAAAAAAAATTAGTAGCATATTATTCTTGTAGTATTTAGTTCTGTAGATT
TAAAAATAATGTATCCTTTGCTTTGGAAGCATACAAAAAATGCTGTTTTACTCTATTAATATGC
ATGGAATCTCTCCCTTTGGAGTGACGCATTTTGTGCATTAAATTTGGGGGAGAAACTTCATAGA
GATCAATGGACATACTTTCTTTCTTAAGTCTGCTTGTATATTCTCTGTCTTTCACATAAATATA
AACCAGCAGATTGGATGCCTTAACAATGCAAGTCACACCCATTTCACCTGTACATTGTACTGTG
CACCCCCACCGTCAGCCATCACTCACATCTAAGAAAAAAAACAAAGAAAAAGAAGAAAAAAAAG
AGAAATGGAAAAGCACAAACGAACTGTTTTGTAACTTTAAGACAATGTTACTTTTTCTAGTAGA
GCAAGTGAACATTAACGATGCTGCGACTGTGCATGCCCCGTATGGATTTCAACGGTTTTCACTA
GACTGTCAGAGTGCGGATTTTTATGGGTTGGGGAGGGCAGGGGAGGGGAGTTGGGAGGGGGGAC
TGGTAGGGAAGGGGAGGGAGGAAAGCCGATTTTTCATGGTGAGAAATAATAATAATGACAACTG
ATGATAATAATAATAATAATAAAAAGAAACTGGAAAAAATATAA

hide sequence

RefSeq Acc Id:

XM_039085048 ⟹ XP_038940976

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	29,100,870 - 29,489,142 (+)	NCBI

RefSeq Acc Id:

XM_039085049 ⟹ XP_038940977

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	29,100,871 - 29,489,142 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_446272	(Get FASTA)	NCBI Sequence Viewer
	XP_006246179	(Get FASTA)	NCBI Sequence Viewer
	XP_006246180	(Get FASTA)	NCBI Sequence Viewer
	XP_006246182	(Get FASTA)	NCBI Sequence Viewer
	XP_017452447	(Get FASTA)	NCBI Sequence Viewer
	XP_017452449	(Get FASTA)	NCBI Sequence Viewer
	XP_017452451	(Get FASTA)	NCBI Sequence Viewer
	XP_038940976	(Get FASTA)	NCBI Sequence Viewer
	XP_038940977	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAA41759	(Get FASTA)	NCBI Sequence Viewer
	EDM04152	(Get FASTA)	NCBI Sequence Viewer
	Q63398	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_446272 ⟸ NM_053820

- UniProtKB:

Q63398 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MFGIQESIQRSGSSMKEEPLGSGMNAVRTWMQGAGVLDANTAAQSGVGLARAHFEKQPPSNLRK
SNFFHFVLALYDRQGQPVEIERTAFVGFVEKEKEANSEKTNNGIHYRLQLLYSNGIRTEQDFYV
RLIDSMTKQAIVYEGQDKNPEMCRVLLTHEIMCSRCCDKKSCGNRNETPSDPVIIDRFFLKFFL
KCNQNCLKNAGNPRDMRRFQVVVSTTVNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEAATPC
IKAISPSEGWTTGGATVIIIGDNFFDGLQVIFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTL
SYKSKQFCKGTPGRFIYTALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVILKRAADLVEALYG
MPHNNQEIILKRAADIAEALYSVPRNHNQLPALANTSVHAGMMGVNSFSGQLAVNVSEASQATN
QGFTRNSSSVSPHGYVPSTTPQQTNYNSVTTSMNGYGSAAMSNLGGSPTFLNGSAANSPYAIVP
SSPTMASSTSLPSNCSSSSGIFSFSPANMVSAVKQKSAFAPVVRPQTSPPPTCTSTNGNSLQAI
SGMIVPPM

hide sequence

RefSeq Acc Id:

XP_006246182 ⟸ XM_006246120

- Peptide Label:

isoform X7

- Sequence:

show sequence

MKEEPLGSGMNAVRTWMQGAGVLDANTAAQSGVGLARAHFEKQPPSNLRKSNFFHFVLALYDRQ
GQPVEIERTAFVGFVEKEKEANSEKTNNGIHYRLQLLYSNGIRTEQDFYVRLIDSMTKQAIVYE
GQDKNPEMCRVLLTHEIMCSRCCDKKSCGNRNETPSDPVIIDRFFLKFFLKCNQNCLKNAGNPR
DMRRFQVVVSTTVNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEGTPSYLEHAATPCIKAISP
SEGWTTGGATVIIIGDNFFDGLQVIFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQ
FCKGTPGRFIYTALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVILKRAADLVEALYGMPHNNQ
EIILKRAADIAEALYSVPRNHNQLPALANTSVHAGMMGVNSFSGQLAVNVSEASQATNQGFTRN
SSSVSPHGYVPSTTPQQTNYNSVTTSMNGYGSAAMSNLGGSPTFLNGSAANSPYAIVPSSPTMA
SSTSLPSNCSSSSGIFSFSPANMVSAVKQKSAFAPVVRPQTSPPPTCTSTNGNSLQAISGMIVP
PM

hide sequence

RefSeq Acc Id:

XP_006246179 ⟸ XM_006246117

- Peptide Label:

isoform X1

- Sequence:

show sequence

MFGIQESIQRSGSSMKEEPLGSGMNAVRTWMQGAGVLDANTAAQSGVGLARAHFEKQPPSNLRK
SNFFHFVLALYDRQGQPVEIERTAFVGFVEKEKEANSEKTNNGIHYRLQLLYSNGIRTEQDFYV
RLIDSMTKQAIVYEGQDKNPEMCRVLLTHEIMCSRCCDKKSCGNRNETPSDPVIIDRFFLKFFL
KCNQNCLKNAGNPRDMRRFQVVVSTTVNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEGTPSY
LEHAATPCIKAISPSEGWTTGGATVIIIGDNFFDGLQVIFGTMLVWSELITPHAIRVQTPPRHI
PGVVEVTLSYKSKQFCKGTPGRFIYTALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVILKRAA
DLVEALYGMPHNNQEIILKRAADIAEALYSVPRNHNQLPALANTSVHAGMMGVNSFSGQLAVNV
SEASQATNQGFTRNSSSVSPHGYVPSTTPQQTNYNSVTTSMNGYGSAAMSNLGGSPTFLNGSAA
NSPYAIVPSSPTMASSTSLPSNCSSSSGIFSFSPANMVSAVKQKSAFAPVVRPQTSPPPTCTST
NGNSLQAISGMIVPPM

hide sequence

RefSeq Acc Id:

XP_006246180 ⟸ XM_006246118

- Peptide Label:

isoform X2

- Sequence:

show sequence

MFGIQESIQRSGSSMKEEPLGSGMNAVRTWMQGAGVLDANTAAQSGVGLARAHFEKQPPSNLRK
SNFFHFVLALYDRQGQPVEIERTAFVGFVEKEKEANSEKTNNGIHYRLQLLYSNGIRTEQDFYV
RLIDSMTKQAIVYEGQDKNPEMCRVLLTHEIMCSRCCDKKSCGNRNETPSDPVIIDRFFLKFFL
KCNQNCLKNAGNPRDMRRFQVVVSTTVNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEGTPSY
LEHATPCIKAISPSEGWTTGGATVIIIGDNFFDGLQVIFGTMLVWSELITPHAIRVQTPPRHIP
GVVEVTLSYKSKQFCKGTPGRFIYTALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVILKRAAD
LVEALYGMPHNNQEIILKRAADIAEALYSVPRNHNQLPALANTSVHAGMMGVNSFSGQLAVNVS
EASQATNQGFTRNSSSVSPHGYVPSTTPQQTNYNSVTTSMNGYGSAAMSNLGGSPTFLNGSAAN
SPYAIVPSSPTMASSTSLPSNCSSSSGIFSFSPANMVSAVKQKSAFAPVVRPQTSPPPTCTSTN
GNSLQAISGMIVPPM

hide sequence

RefSeq Acc Id:

XP_017452447 ⟸ XM_017596958

- Peptide Label:

isoform X3

- Sequence:

show sequence

MFGIQESIQRSGSSMKEEPLGSGMNAVRTWMQGAGVLDANTAAQSGVGLARAHFEKQPPSNLRK
SNFFHFVLALYDRQGQPVEIERTAFVGFVEKEKEANSEKTNNGIHYRLQLLYSNGIRTEQDFYV
RLIDSMTKQAIVYEGQDKNPEMCRVLLTHEIMCSRCCDKKSCGNRNETPSDPVIIDRFFLKFFL
KCNQNCLKNAGNPRDMRRFQVVVSTTVNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEATPCI
KAISPSEGWTTGGATVIIIGDNFFDGLQVIFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLS
YKSKQFCKGTPGRFIYTALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVILKRAADLVEALYGM
PHNNQEIILKRAADIAEALYSVPRNHNQLPALANTSVHAGMMGVNSFSGQLAVNVSEASQATNQ
GFTRNSSSVSPHGYVPSTTPQQTNYNSVTTSMNGYGSAAMSNLGGSPTFLNGSAANSPYAIVPS
SPTMASSTSLPSNCSSSSGIFSFSPANMVSAVKQKSAFAPVVRPQTSPPPTCTSTNGNSLQAIS
GMIVPPM

hide sequence

RefSeq Acc Id:

XP_017452449 ⟸ XM_017596960

- Peptide Label:

isoform X4

- Sequence:

show sequence

MLLEANLRNFPGHTQCPVQGLLVPSEKCGVGLARAHFEKQPPSNLRKSNFFHFVLALYDRQGQP
VEIERTAFVGFVEKEKEANSEKTNNGIHYRLQLLYSNGIRTEQDFYVRLIDSMTKQAIVYEGQD
KNPEMCRVLLTHEIMCSRCCDKKSCGNRNETPSDPVIIDRFFLKFFLKCNQNCLKNAGNPRDMR
RFQVVVSTTVNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEGTPSYLEHAATPCIKAISPSEG
WTTGGATVIIIGDNFFDGLQVIFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCK
GTPGRFIYTALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVILKRAADLVEALYGMPHNNQEII
LKRAADIAEALYSVPRNHNQLPALANTSVHAGMMGVNSFSGQLAVNVSEASQATNQGFTRNSSS
VSPHGYVPSTTPQQTNYNSVTTSMNGYGSAAMSNLGGSPTFLNGSAANSPYAIVPSSPTMASST
SLPSNCSSSSGIFSFSPANMVSAVKQKSAFAPVVRPQTSPPPTCTSTNGNSLQAISGMIVPPM

hide sequence

RefSeq Acc Id:

XP_017452451 ⟸ XM_017596962

- Peptide Label:

isoform X8

- Sequence:

show sequence

MTKQAIVYEGQDKNPEMCRVLLTHEIMCSRCCDKKSCGNRNETPSDPVIIDRFFLKFFLKCNQN
CLKNAGNPRDMRRFQVVVSTTVNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEGTPSYLEHAA
TPCIKAISPSEGWTTGGATVIIIGDNFFDGLQVIFGTMLVWSELITPHAIRVQTPPRHIPGVVE
VTLSYKSKQFCKGTPGRFIYTALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVILKRAADLVEA
LYGMPHNNQEIILKRAADIAEALYSVPRNHNQLPALANTSVHAGMMGVNSFSGQLAVNVSEASQ
ATNQGFTRNSSSVSPHGYVPSTTPQQTNYNSVTTSMNGYGSAAMSNLGGSPTFLNGSAANSPYA
IVPSSPTMASSTSLPSNCSSSSGIFSFSPANMVSAVKQKSAFAPVVRPQTSPPPTCTSTNGNSL
QAISGMIVPPM

hide sequence

RefSeq Acc Id:

ENSRNOP00000050344 ⟸ ENSRNOT00000047970

RefSeq Acc Id:

ENSRNOP00000067433 ⟸ ENSRNOT00000071435

RefSeq Acc Id:

ENSRNOP00000068330 ⟸ ENSRNOT00000076674

RefSeq Acc Id:

ENSRNOP00000068319 ⟸ ENSRNOT00000076664

RefSeq Acc Id:	XP_038940976 ⟸ XM_039085048
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038940977 ⟸ XM_039085049
- Peptide Label:	isoform X6

Protein Domains

COE1_DBD IPT/TIG

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13697115

Promoter ID:

EPDNEW_R7629

Type:

multiple initiation site

Name:

Ebf1_1

Description:

early B-cell factor 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	23,661,315 - 23,661,375	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN-Lx/CubMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BUF/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH2/CubMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH3/CubMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

DA/OlaHsd (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/DuCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

F344/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FXLE16/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE18/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/FarMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

HXB10/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB2/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB20/IpcvMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB31/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB4/IpcvMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEXF10A/StmMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF11/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1A/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1C/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF2B/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF3/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF4/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

M520/NRrrcMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MWF/Hsd (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

PVG/Seac (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/OlalpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/A3NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/RijCrl (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620953	AgrOrtholog
Ensembl Genes	ENSRNOG00000028845	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000050344	UniProtKB/TrEMBL
	ENSRNOP00000067433	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOP00000068319	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOP00000068330	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000047970	UniProtKB/TrEMBL
	ENSRNOT00000071435	UniProtKB/TrEMBL
	ENSRNOT00000076664	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOT00000076674	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	2.60.40.3180	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	4.10.280.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	COE_DBD	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	COE_DBD_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	COE_HLH	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	COE_IPT	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	HLH_DNA-bd_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ig_E-set	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	IPT_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Transcription_factor_COE	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Transcription_factor_COE_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:116543	UniProtKB/Swiss-Prot
NCBI Gene	116543	ENTREZGENE
PANTHER	PTHR10747	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	COE1_DBD	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	COE1_HLH	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TIG	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Ebf1	PhenoGen
PROSITE	COE	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	IPT	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF81296	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A096MIU2_RAT	UniProtKB/TrEMBL
	A0A096MK03_RAT	UniProtKB/TrEMBL
	COE1_RAT	UniProtKB/Swiss-Prot
	M0RCU9_RAT	UniProtKB/TrEMBL
	Q63398	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2018-10-03	Ebf1	EBF transcription factor 1	Ebf1	early B-cell factor 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	Ebf1	early B-cell factor 1	Ebf	early B-cell factor (olfactory neuronal transcription factor 1)	Symbol and Name updated	1299863	APPROVED
2002-08-07	Ebf	early B-cell factor (olfactory neuronal transcription factor 1)			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_domains	protein contains a helix-loop-helix motif	61626
gene_expression	protein is expressed exclusively in olfactory receptor neurons/precursors	61626
gene_physical_interaction	protein appears to function as a homodimer	61626

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

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