Rsl1d1 (ribosomal L1 domain containing 1) - Rat Genome Database
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Gene: Rsl1d1 (ribosomal L1 domain containing 1) Rattus norvegicus
Analyze
Symbol: Rsl1d1
Name: ribosomal L1 domain containing 1
RGD ID: 1359295
Description: Predicted to have mRNA 3'-UTR binding activity and mRNA 5'-UTR binding activity. Predicted to be involved in regulation of apoptotic process; regulation of cellular senescence; and regulation of protein localization. Predicted to localize to chromosome and nucleolus. Orthologous to human RSL1D1 (ribosomal L1 domain containing 1); INTERACTS WITH (+)-schisandrin B; bisphenol A; cadmium dichloride.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: Ac1158; cellular senescence inhibited; Csig; LOC302898; ribosomal L1 domain-containing protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2104,424,868 - 4,436,753 (+)NCBI
Rnor_6.0 Ensembl104,356,915 - 4,390,030 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0104,375,329 - 4,387,195 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0103,214,338 - 3,327,890 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4104,284,439 - 4,326,282 (+)NCBIRGSC3.4rn4RGSC3.4
Celera103,421,631 - 3,463,400 (+)NCBICelera
Cytogenetic Map10q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:16210410   PMID:16213212   PMID:17158916   PMID:18678645   PMID:21452304   PMID:22658674   PMID:22681889   PMID:25468996  


Genomics

Comparative Map Data
Rsl1d1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2104,424,868 - 4,436,753 (+)NCBI
Rnor_6.0 Ensembl104,356,915 - 4,390,030 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0104,375,329 - 4,387,195 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0103,214,338 - 3,327,890 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4104,284,439 - 4,326,282 (+)NCBIRGSC3.4rn4RGSC3.4
Celera103,421,631 - 3,463,400 (+)NCBICelera
Cytogenetic Map10q11NCBI
RSL1D1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1611,833,850 - 11,851,580 (-)EnsemblGRCh38hg38GRCh38
GRCh381611,833,850 - 11,851,542 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371611,927,707 - 11,945,399 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361611,835,554 - 11,852,943 (-)NCBINCBI36hg18NCBI36
Build 341611,838,711 - 11,852,896NCBI
Celera1612,102,372 - 12,119,761 (-)NCBI
Cytogenetic Map16p13.13NCBI
HuRef1611,844,751 - 11,862,142 (-)NCBIHuRef
CHM1_11611,927,990 - 11,945,394 (-)NCBICHM1_1
Rsl1d1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391611,010,901 - 11,021,156 (-)NCBIGRCm39mm39
GRCm39 Ensembl1611,010,834 - 11,021,195 (-)Ensembl
GRCm381611,193,037 - 11,203,292 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1611,192,970 - 11,203,331 (-)EnsemblGRCm38mm10GRCm38
MGSCv371611,193,130 - 11,203,385 (-)NCBIGRCm37mm9NCBIm37
MGSCv361611,106,615 - 11,116,870 (-)NCBImm8
Celera1611,824,705 - 11,834,960 (-)NCBICelera
Cytogenetic Map16A1NCBI
Rsl1d1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554426,748,267 - 6,764,650 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554426,749,038 - 6,764,461 (+)NCBIChiLan1.0ChiLan1.0
RSL1D1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11612,001,209 - 12,015,100 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1612,001,214 - 12,015,100 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01610,776,243 - 10,790,280 (-)NCBIMhudiblu_PPA_v0panPan3
RSL1D1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1630,982,391 - 30,995,137 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl630,982,441 - 30,995,099 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha632,362,765 - 32,375,476 (+)NCBI
ROS_Cfam_1.0631,160,236 - 31,172,984 (+)NCBI
UMICH_Zoey_3.1630,974,637 - 30,987,374 (+)NCBI
UNSW_CanFamBas_1.0630,849,091 - 30,861,781 (+)NCBI
UU_Cfam_GSD_1.0631,272,341 - 31,285,124 (+)NCBI
Rsl1d1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_ltri_2NW_024409344111,767,815 - 111,776,786 (-)NCBI
SpeTri2.0NW_0049365309,613,256 - 9,622,005 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RSL1D1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl331,278,852 - 31,293,249 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1331,278,394 - 31,291,205 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
RSL1D1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1511,307,508 - 11,319,199 (-)NCBI
Rsl1d1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247826,456,641 - 6,473,360 (+)NCBI

Position Markers
RH133814  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0104,312,651 - 4,312,857NCBIRnor6.0
Rnor_6.0104,411,123 - 4,411,329NCBIRnor6.0
Rnor_5.0103,277,052 - 3,277,258UniSTSRnor5.0
Rnor_5.0103,178,722 - 3,178,928UniSTSRnor5.0
RGSC_v3.4104,248,747 - 4,248,953UniSTSRGSC3.4
Celera103,385,939 - 3,386,145UniSTS
Cytogenetic Map10q11UniSTS
WI-19180  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0104,347,227 - 4,347,459NCBIRnor6.0
Rnor_6.0104,445,775 - 4,446,007NCBIRnor6.0
Rnor_5.0103,311,704 - 3,311,936UniSTSRnor5.0
Rnor_5.0103,213,298 - 3,213,530UniSTSRnor5.0
RGSC_v3.4104,283,399 - 4,283,631UniSTSRGSC3.4
Celera103,420,591 - 3,420,823UniSTS
Cytogenetic Map10q11UniSTS
RH128035  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0104,347,383 - 4,347,584NCBIRnor6.0
Rnor_6.0104,445,931 - 4,446,132NCBIRnor6.0
Rnor_5.0103,311,860 - 3,312,061UniSTSRnor5.0
Rnor_5.0103,213,454 - 3,213,655UniSTSRnor5.0
RGSC_v3.4104,283,555 - 4,283,756UniSTSRGSC3.4
Celera103,420,747 - 3,420,948UniSTS
Cytogenetic Map10q11UniSTS
RH130073  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0104,351,211 - 4,351,400NCBIRnor6.0
Rnor_5.0103,217,282 - 3,217,471UniSTSRnor5.0
RGSC_v3.4104,287,383 - 4,287,572UniSTSRGSC3.4
Celera103,424,575 - 3,424,764UniSTS
Cytogenetic Map10q11UniSTS
RH130426  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0104,364,413 - 4,364,562NCBIRnor6.0
Rnor_6.0104,476,930 - 4,477,079NCBIRnor6.0
Rnor_5.0103,230,484 - 3,230,633UniSTSRnor5.0
RGSC_v3.4104,300,644 - 4,300,793UniSTSRGSC3.4
Celera103,437,762 - 3,437,911UniSTS
Cytogenetic Map10q11UniSTS
RH133062  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.0103,252,937 - 3,253,140UniSTSRnor5.0
Rnor_5.0103,324,725 - 3,324,928UniSTSRnor5.0
RGSC_v3.4104,323,117 - 4,323,320UniSTSRGSC3.4
Celera103,460,235 - 3,460,438UniSTS
Cytogenetic Map10q11UniSTS
RH134253  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.0103,312,796 - 3,312,981UniSTSRnor5.0
Rnor_5.0103,241,028 - 3,241,213UniSTSRnor5.0
RGSC_v3.4104,311,188 - 4,311,373UniSTSRGSC3.4
Celera103,448,306 - 3,448,491UniSTS
RH 3.4 Map1041.3UniSTS
Cytogenetic Map10q11UniSTS
RH135149  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0104,349,064 - 4,349,279NCBIRnor6.0
Rnor_5.0103,215,135 - 3,215,350UniSTSRnor5.0
RGSC_v3.4104,285,236 - 4,285,451UniSTSRGSC3.4
Celera103,422,428 - 3,422,643UniSTS
Cytogenetic Map10q11UniSTS
RH139401  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.0103,253,110 - 3,253,182NCBIRnor5.0
Rnor_5.0103,324,898 - 3,324,970NCBIRnor5.0
Rnor_5.0X9,363,878 - 9,363,950NCBIRnor5.0
RGSC_v3.4104,323,291 - 4,323,362UniSTSRGSC3.4
RGSC_v3.4X19,645,808 - 19,645,879UniSTSRGSC3.4
Celera103,460,409 - 3,460,480UniSTS
CeleraX8,339,703 - 8,339,774UniSTS
Cytogenetic Map10q11UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135538813Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1076442166221621Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138594330Rat
1549898Neuinf3Neuroinflammation QTL 326.4nervous system integrity trait (VT:0010566)MHC Class II RT1A-positive spinal cord ventral horn area to total spinal cord ventral horn area ratio (CMO:0001980)1028476255460218Rat
7387235Uae41Urinary albumin excretion QTL 415.260.1874urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)10129592136Rat
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142669970Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)10144902893Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:55
Count of miRNA genes:49
Interacting mature miRNAs:50
Transcripts:ENSRNOT00000044593
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium
Low 1 13 34 18 19 18 8 9 54 21 22 11 8
Below cutoff 2 30 23 23 23 2 20 14 19

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001329198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACYVU010000217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000044593   ⟹   ENSRNOP00000042092
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl104,356,915 - 4,390,030 (+)Ensembl
RefSeq Acc Id: NM_001329198   ⟹   NP_001316127
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2104,424,868 - 4,436,753 (+)NCBI
Rnor_6.0104,375,329 - 4,387,195 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001316127 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001316127   ⟸   NM_001329198
- Sequence:
RefSeq Acc Id: ENSRNOP00000042092   ⟸   ENSRNOT00000044593

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359295 AgrOrtholog
Ensembl Genes ENSRNOG00000032439 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000042092 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000044593 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1330.210 UniProtKB/TrEMBL
  3.40.50.790 UniProtKB/TrEMBL
InterPro Ribosomal_L1-like UniProtKB/TrEMBL
  Ribosomal_L1/biogenesis UniProtKB/TrEMBL
  Ribosomal_L1_3-a/b-sand UniProtKB/TrEMBL
  Ribosomal_L7A/L8 UniProtKB/TrEMBL
  Ribosomal_L7A/L8_sf UniProtKB/TrEMBL
NCBI Gene Rsl1d1 ENTREZGENE
Pfam Ribosomal_L1 UniProtKB/TrEMBL
PhenoGen Rsl1d1 PhenoGen
PRINTS RIBOSOMALL7A UniProtKB/TrEMBL
Superfamily-SCOP SSF56808 UniProtKB/TrEMBL
UniProt Q7TQ86_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-04 Rsl1d1  ribosomal L1 domain containing 1  LOC302898  Ac1158  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-29 LOC302898  Ac1158      Symbol and Name status set to provisional 70820 PROVISIONAL