LOC108352198 (uncharacterized LOC108352198) - Rat Genome Database

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Gene: LOC108352198 (uncharacterized LOC108352198) Rattus norvegicus
Analyze
Symbol: LOC108352198
Name: uncharacterized LOC108352198
RGD ID: 11387328
Description:
Type: ncrna
RefSeq Status: MODEL
Previously known as: uncharacterized protein LOC108352198
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81018,606,416 - 18,671,714 (+)NCBIGRCr8
mRatBN7.21018,102,352 - 18,167,503 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.01018,499,623 - 18,561,133 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Cytogenetic Map10q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC108352198
555 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634329Pia15Pristane induced arthritis QTL 153.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10124158324Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135225947Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138328221Rat
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142315980Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
1576304Schws7Schwannoma susceptibility QTL 70.0115nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)10476552719816042Rat
737820Alc9Alcohol consumption QTL 92.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10514402719233348Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10538701450387014Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10538701450387014Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10538701450387014Rat
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)10580199062146030Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10637574651375746Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
9590310Scort19Serum corticosterone level QTL 196.30.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
9590268Scort13Serum corticosterone level QTL 133.260.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
9589136Insul27Insulin level QTL 2710.460.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)101147401056474010Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101448701189062041Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
1354587Kidm21Kidney mass QTL 213.3kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)101502851360430477Rat
631564Apr3Acute phase response QTL 33.9blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)101527595560275955Rat
6893350Bw99Body weight QTL 990.870.16body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
6893352Bw100Body weight QTL 1000.330.6body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
737823Alc12Alcohol consumption QTL 124.5consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)101724551319388279Rat
631532Cm50Cardiac mass QTL 506.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)101790711351786432Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_017597830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001840361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001840362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001840363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005490611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005490615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010055561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010055562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010055563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010055564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010055565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010055566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010055567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide FQ214297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XR_005490611
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81018,606,419 - 18,671,714 (+)NCBI
mRatBN7.21018,102,352 - 18,167,503 (+)NCBI
RefSeq Acc Id: XR_005490615
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81018,613,396 - 18,633,561 (+)NCBI
RefSeq Acc Id: XR_010055561
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81018,606,422 - 18,662,711 (+)NCBI
RefSeq Acc Id: XR_010055562
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81018,606,426 - 18,671,714 (+)NCBI
RefSeq Acc Id: XR_010055563
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81018,613,396 - 18,671,714 (+)NCBI
RefSeq Acc Id: XR_010055564
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81018,613,396 - 18,671,714 (+)NCBI
RefSeq Acc Id: XR_010055565
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81018,613,396 - 18,671,714 (+)NCBI
RefSeq Acc Id: XR_010055566
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81018,613,396 - 18,633,561 (+)NCBI
RefSeq Acc Id: XR_010055567
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81018,606,416 - 18,633,561 (+)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-25601 BioCyc
NCBI Gene LOC108352198 ENTREZGENE
PhenoGen LOC108352198 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-02 LOC108352198  uncharacterized LOC108352198      Symbol and Name status set to provisional 70820 PROVISIONAL