Tenm2 (teneurin transmembrane protein 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Tenm2 (teneurin transmembrane protein 2) Rattus norvegicus
Analyze
Symbol: Tenm2
Name: teneurin transmembrane protein 2
RGD ID: 727907
Description: Enables cell adhesion molecule binding activity and signaling receptor binding activity. Involved in heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules. Located in dendritic spine and postsynaptic membrane. Is active in glutamatergic synapse. Is extrinsic component of postsynaptic membrane. Orthologous to human TENM2 (teneurin transmembrane protein 2); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 6-propyl-2-thiouracil; acetamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Lasso; LOC102551468; neurestin; odd Oz/ten-m homolog 2; odd Oz/ten-m homolog 2 (Drosophila); odz, odd Oz/ten-m homolog 2; odz, odd Oz/ten-m homolog 2 (Drosophila); Odz2; ten-2; ten-m2; tenascin-M2; teneurin-2; teneurin-2-like
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81020,984,710 - 22,121,001 (-)NCBIGRCr8
mRatBN7.21020,480,662 - 21,706,415 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1020,481,854 - 21,705,597 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1025,229,591 - 26,365,979 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01024,718,139 - 25,854,542 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01020,205,571 - 21,341,852 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01020,846,091 - 21,791,771 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1020,844,899 - 21,265,026 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01020,716,458 - 21,659,087 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41020,939,207 - 21,888,443 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11020,940,255 - 22,096,609 (-)NCBI
Celera1020,101,901 - 21,233,134 (-)NCBICelera
Cytogenetic Map10q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. NCBI rat LocusLink and RefSeq merged data October 15, 2003 NCBI rat LocusLink and RefSeq merged data October 15, 2003
4. Neurestin: putative transmembrane molecule implicated in neuronal development. Otaki JM and Firestein S, Dev Biol 1999 Aug 1;212(1):165-81.
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Latrophilin 1 and its endogenous ligand Lasso/teneurin-2 form a high-affinity transsynaptic receptor pair with signaling capabilities. Silva JP, etal., Proc Natl Acad Sci U S A. 2011 Jul 19;108(29):12113-8. doi: 10.1073/pnas.1019434108. Epub 2011 Jul 1.
Additional References at PubMed
PMID:12000766  


Genomics

Comparative Map Data
Tenm2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81020,984,710 - 22,121,001 (-)NCBIGRCr8
mRatBN7.21020,480,662 - 21,706,415 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1020,481,854 - 21,705,597 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1025,229,591 - 26,365,979 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01024,718,139 - 25,854,542 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01020,205,571 - 21,341,852 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01020,846,091 - 21,791,771 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1020,844,899 - 21,265,026 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01020,716,458 - 21,659,087 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41020,939,207 - 21,888,443 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11020,940,255 - 22,096,609 (-)NCBI
Celera1020,101,901 - 21,233,134 (-)NCBICelera
Cytogenetic Map10q12NCBI
TENM2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385166,979,029 - 168,264,157 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5166,979,029 - 168,264,157 (+)EnsemblGRCh38hg38GRCh38
GRCh375166,406,034 - 167,691,162 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365167,114,519 - 167,623,740 (+)NCBINCBI36Build 36hg18NCBI36
Build 345167,477,951 - 167,623,739NCBI
Celera5162,750,499 - 163,726,534 (+)NCBICelera
Cytogenetic Map5q34NCBI
HuRef5161,812,425 - 162,791,103 (+)NCBIHuRef
CHM1_15166,144,311 - 167,124,193 (+)NCBICHM1_1
T2T-CHM13v2.05167,513,669 - 168,798,988 (+)NCBIT2T-CHM13v2.0
Tenm2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391135,897,483 - 37,881,486 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1135,897,483 - 37,126,791 (-)EnsemblGRCm39 Ensembl
GRCm381136,006,656 - 37,237,053 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1136,006,656 - 37,235,964 (-)EnsemblGRCm38mm10GRCm38
MGSCv371135,820,171 - 36,757,745 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361135,851,071 - 36,787,666 (-)NCBIMGSCv36mm8
Celera1140,009,205 - 40,811,666 (-)NCBICelera
Cytogenetic Map11A4- A5NCBI
cM Map1121.96NCBI
Tenm2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540820,437,067 - 21,338,897 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540820,150,223 - 21,340,276 (+)NCBIChiLan1.0ChiLan1.0
TENM2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24160,186,848 - 163,424,969 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15158,326,399 - 161,564,515 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05162,346,710 - 163,627,371 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15169,420,475 - 170,392,593 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5169,420,480 - 170,392,581 (+)Ensemblpanpan1.1panPan2
TENM2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1443,450,278 - 44,962,993 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl443,451,059 - 44,377,371 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha443,408,748 - 44,060,223 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0443,873,657 - 44,519,117 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl443,874,738 - 44,793,811 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1443,643,674 - 44,287,381 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0443,838,128 - 44,482,532 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0444,344,597 - 44,989,412 (-)NCBIUU_Cfam_GSD_1.0
Tenm2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721397,485,971 - 98,368,217 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366221,102,963 - 1,983,751 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366221,101,587 - 1,983,816 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TENM2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1655,625,320 - 56,620,257 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11655,624,273 - 59,084,150 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21660,189,355 - 61,223,392 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TENM2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12369,206,076 - 70,487,159 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660348,199,738 - 9,519,849 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tenm2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473321,732,787 - 22,627,526 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473321,732,997 - 22,921,889 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tenm2
8214 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:302
Count of miRNA genes:115
Interacting mature miRNAs:125
Transcripts:ENSRNOT00000011922, ENSRNOT00000068312
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634329Pia15Pristane induced arthritis QTL 153.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10124158324Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135225947Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138328221Rat
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142315980Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10538701450387014Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10538701450387014Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10538701450387014Rat
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)10580199062146030Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10637574651375746Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
9590310Scort19Serum corticosterone level QTL 196.30.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
9590268Scort13Serum corticosterone level QTL 133.260.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
9589136Insul27Insulin level QTL 2710.460.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)101147401056474010Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101448701189062041Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
1354587Kidm21Kidney mass QTL 213.3kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)101502851360430477Rat
631564Apr3Acute phase response QTL 33.9blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)101527595560275955Rat
6893350Bw99Body weight QTL 990.870.16body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
6893352Bw100Body weight QTL 1000.330.6body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
631532Cm50Cardiac mass QTL 506.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)101790711351786432Rat
1598852Anxrr19Anxiety related response QTL 195.07body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)101816784163167841Rat
2313055Bw96Body weight QTL 963.60.0001body mass (VT:0001259)body weight (CMO:0000012)101960648364606483Rat
2313087Bmd80Bone mineral density QTL 803.20.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)101960648364606483Rat
1554317Bmd4Bone mineral density QTL 49.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)101981604299406971Rat
1581497Esta1Estrogen-induced thymic atrophy QTL 1thymus mass (VT:0004954)thymus wet weight (CMO:0000855)102132980561345413Rat

Markers in Region
D10Mit5  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01021,523,906 - 21,524,070NCBIRnor6.0
Rnor_5.01021,392,295 - 21,392,459UniSTSRnor5.0
RGSC_v3.41021,607,719 - 21,607,865RGDRGSC3.4
RGSC_v3.41021,607,720 - 21,607,865UniSTSRGSC3.4
RGSC_v3.11021,608,769 - 21,608,914RGD
RH 3.4 Map10240.41UniSTS
RH 3.4 Map10240.41RGD
RH 2.0 Map10246.1RGD
Cytogenetic Map10q12UniSTS
D10Rat42  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21021,329,805 - 21,329,934 (+)MAPPERmRatBN7.2
mRatBN7.21021,329,805 - 21,330,072 (+)MAPPERmRatBN7.2
Rnor_6.01021,707,766 - 21,708,067NCBIRnor6.0
Rnor_6.01021,707,766 - 21,707,894NCBIRnor6.0
Rnor_5.01021,575,051 - 21,575,352UniSTSRnor5.0
Rnor_5.01021,575,051 - 21,575,179UniSTSRnor5.0
RH 3.4 Map10240.11RGD
RH 3.4 Map10240.11UniSTS
RH 2.0 Map10251.9RGD
SHRSP x BN Map1027.23RGD
FHH x ACI Map1015.2RGD
Cytogenetic Map10q12UniSTS
D10Rat75  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21020,776,430 - 20,776,562 (+)MAPPERmRatBN7.2
Rnor_6.01021,140,054 - 21,140,185NCBIRnor6.0
Rnor_5.01021,008,287 - 21,008,418UniSTSRnor5.0
RGSC_v3.41021,235,991 - 21,236,123RGDRGSC3.4
RGSC_v3.41021,235,992 - 21,236,123UniSTSRGSC3.4
RGSC_v3.11021,237,040 - 21,237,172RGD
Celera1020,395,511 - 20,395,642UniSTS
SHRSP x BN Map1026.1499RGD
SHRSP x BN Map1026.1499UniSTS
Cytogenetic Map10q12UniSTS
D10Rat179  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01021,236,996 - 21,237,161NCBIRnor6.0
Rnor_5.01021,105,195 - 21,105,360UniSTSRnor5.0
RGSC_v3.41021,332,818 - 21,333,025RGDRGSC3.4
RGSC_v3.41021,332,819 - 21,333,025UniSTSRGSC3.4
RGSC_v3.11021,333,867 - 21,334,074RGD
Celera1020,491,739 - 20,491,934UniSTS
SHRSP x BN Map1027.31UniSTS
SHRSP x BN Map1027.31RGD
Cytogenetic Map10q12UniSTS
D11Mit232  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21020,526,569 - 20,526,750 (+)MAPPERmRatBN7.2
Rnor_6.01020,890,843 - 20,891,023NCBIRnor6.0
Rnor_5.01020,761,210 - 20,761,390UniSTSRnor5.0
RGSC_v3.41020,983,922 - 20,984,102UniSTSRGSC3.4
Celera1020,146,552 - 20,146,719UniSTS
Cytogenetic Map10q12UniSTS
BE102452  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21020,499,028 - 20,499,194 (+)MAPPERmRatBN7.2
Rnor_6.01020,863,306 - 20,863,471NCBIRnor6.0
Rnor_5.01020,733,673 - 20,733,838UniSTSRnor5.0
RGSC_v3.41020,956,384 - 20,956,549UniSTSRGSC3.4
Celera1020,119,074 - 20,119,239UniSTS
RH 3.4 Map10214.33UniSTS
Cytogenetic Map10q12UniSTS
RH138576  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21020,481,529 - 20,481,726 (+)MAPPERmRatBN7.2
Rnor_6.01020,845,767 - 20,845,963NCBIRnor6.0
Rnor_5.01020,716,134 - 20,716,330UniSTSRnor5.0
RGSC_v3.41020,938,883 - 20,939,079UniSTSRGSC3.4
Celera1020,101,577 - 20,101,773UniSTS
RH 3.4 Map10215.72UniSTS
Cytogenetic Map10q12UniSTS
D3Bwg1534e  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21020,481,842 - 20,482,055 (+)MAPPERmRatBN7.2
Rnor_6.01020,846,080 - 20,846,292NCBIRnor6.0
Rnor_5.01020,716,447 - 20,716,659UniSTSRnor5.0
RGSC_v3.41020,939,196 - 20,939,408UniSTSRGSC3.4
Celera1020,101,890 - 20,102,102UniSTS
Cytogenetic Map10q12UniSTS
RH144521  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21020,635,298 - 20,635,482 (+)MAPPERmRatBN7.2
Rnor_6.01022,105,801 - 22,105,984NCBIRnor6.0
Rnor_6.01020,998,936 - 20,999,119NCBIRnor6.0
Rnor_5.01021,971,053 - 21,971,236UniSTSRnor5.0
Rnor_5.01020,866,384 - 20,866,567UniSTSRnor5.0
RGSC_v3.41021,093,062 - 21,093,245UniSTSRGSC3.4
Celera1020,254,868 - 20,255,051UniSTS
RH 3.4 Map10241.11UniSTS
Cytogenetic Map10q12UniSTS
BE096193  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21021,131,025 - 21,131,224 (+)MAPPERmRatBN7.2
Rnor_6.01021,507,177 - 21,507,375NCBIRnor6.0
Rnor_5.01021,375,566 - 21,375,764UniSTSRnor5.0
RGSC_v3.41021,591,079 - 21,591,277UniSTSRGSC3.4
Celera1020,748,252 - 20,748,450UniSTS
RH 3.4 Map10239.4UniSTS
Cytogenetic Map10q12UniSTS
AI501498  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21020,949,883 - 20,950,071 (+)MAPPERmRatBN7.2
Rnor_6.01021,314,944 - 21,315,131NCBIRnor6.0
Rnor_5.01021,182,663 - 21,182,850UniSTSRnor5.0
RGSC_v3.41021,410,540 - 21,410,727UniSTSRGSC3.4
Celera1020,568,102 - 20,568,289UniSTS
RH 3.4 Map10235.7UniSTS
Cytogenetic Map10q12UniSTS
AW529537  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21021,044,921 - 21,045,131 (+)MAPPERmRatBN7.2
Rnor_6.01021,420,490 - 21,420,699NCBIRnor6.0
Rnor_5.01021,287,635 - 21,287,844UniSTSRnor5.0
Celera1020,662,181 - 20,662,390UniSTS
RH 3.4 Map10241.7UniSTS
Cytogenetic Map10q12UniSTS
AU049925  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21021,330,407 - 21,330,599 (+)MAPPERmRatBN7.2
Rnor_6.01021,708,541 - 21,708,732NCBIRnor6.0
Rnor_5.01021,575,826 - 21,576,017UniSTSRnor5.0
RGSC_v3.41021,791,994 - 21,792,185UniSTSRGSC3.4
Celera1020,947,151 - 20,947,312UniSTS
Cytogenetic Map10q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 60
Low 3 10 20 4 8 4 7 7 14 2 33 3 7
Below cutoff 22 33 33 11 33 1 3 32 8 8 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_020088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF086607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF086608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF086609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF086610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000011922   ⟹   ENSRNOP00000011922
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1020,481,854 - 21,705,597 (-)Ensembl
Rnor_6.0 Ensembl1020,844,899 - 21,265,026 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000097791   ⟹   ENSRNOP00000077386
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1020,481,854 - 21,705,597 (-)Ensembl
RefSeq Acc Id: NM_020088   ⟹   NP_064473
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81020,985,902 - 22,120,940 (-)NCBI
mRatBN7.21020,481,854 - 21,617,003 (-)NCBI
Rnor_6.01020,846,091 - 21,791,771 (-)NCBI
Rnor_5.01020,716,458 - 21,659,087 (-)NCBI
RGSC_v3.41020,939,207 - 21,888,443 (-)RGD
Celera1020,101,901 - 21,233,134 (-)RGD
Sequence:
RefSeq Acc Id: XM_039085063   ⟹   XP_038940991
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81020,984,710 - 22,121,001 (-)NCBI
mRatBN7.21020,482,113 - 21,706,415 (-)NCBI
RefSeq Acc Id: XM_039085066   ⟹   XP_038940994
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81020,984,710 - 22,121,001 (-)NCBI
mRatBN7.21020,482,113 - 21,705,812 (-)NCBI
RefSeq Acc Id: XM_039085068   ⟹   XP_038940996
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81020,984,710 - 22,121,001 (-)NCBI
mRatBN7.21020,482,113 - 21,705,812 (-)NCBI
RefSeq Acc Id: XM_039085069   ⟹   XP_038940997
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81020,984,710 - 22,121,001 (-)NCBI
mRatBN7.21020,482,113 - 21,705,812 (-)NCBI
RefSeq Acc Id: XM_039085070   ⟹   XP_038940998
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81020,984,710 - 22,121,001 (-)NCBI
mRatBN7.21020,482,113 - 21,705,812 (-)NCBI
RefSeq Acc Id: XM_039085071   ⟹   XP_038940999
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81020,984,710 - 22,121,001 (-)NCBI
mRatBN7.21020,482,113 - 21,705,811 (-)NCBI
RefSeq Acc Id: XM_039085072   ⟹   XP_038941000
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81020,984,710 - 21,667,732 (-)NCBI
mRatBN7.21020,482,113 - 21,163,766 (-)NCBI
RefSeq Acc Id: XM_039085074   ⟹   XP_038941002
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81020,984,710 - 21,419,039 (-)NCBI
mRatBN7.21020,482,113 - 20,905,100 (-)NCBI
RefSeq Acc Id: XM_039085075   ⟹   XP_038941003
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81020,984,710 - 21,419,039 (-)NCBI
mRatBN7.21020,482,113 - 20,905,100 (-)NCBI
RefSeq Acc Id: XM_039085076   ⟹   XP_038941004
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81020,984,710 - 21,667,733 (-)NCBI
mRatBN7.21020,482,113 - 21,163,766 (-)NCBI
RefSeq Acc Id: XM_063268319   ⟹   XP_063124389
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81020,984,710 - 22,001,337 (-)NCBI
RefSeq Acc Id: XM_063268320   ⟹   XP_063124390
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81020,984,710 - 22,121,001 (-)NCBI
RefSeq Acc Id: XM_063268321   ⟹   XP_063124391
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81020,984,710 - 21,667,733 (-)NCBI
RefSeq Acc Id: XM_063268322   ⟹   XP_063124392
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81020,984,710 - 21,667,732 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_064473   ⟸   NM_020088
- UniProtKB: Q9R1K1 (UniProtKB/Swiss-Prot),   Q9R1K0 (UniProtKB/Swiss-Prot),   Q9R1J9 (UniProtKB/Swiss-Prot),   Q9R1K2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000011922   ⟸   ENSRNOT00000011922
RefSeq Acc Id: XP_038940991   ⟸   XM_039085063
- Peptide Label: isoform X1
- UniProtKB: Q9R1K2 (UniProtKB/Swiss-Prot),   Q9R1K1 (UniProtKB/Swiss-Prot),   Q9R1K0 (UniProtKB/Swiss-Prot),   Q9R1J9 (UniProtKB/Swiss-Prot),   A0A096P6L6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038940998   ⟸   XM_039085070
- Peptide Label: isoform X5
- UniProtKB: Q9R1K2 (UniProtKB/Swiss-Prot),   Q9R1K1 (UniProtKB/Swiss-Prot),   Q9R1K0 (UniProtKB/Swiss-Prot),   Q9R1J9 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038940997   ⟸   XM_039085069
- Peptide Label: isoform X4
- UniProtKB: Q9R1K2 (UniProtKB/Swiss-Prot),   Q9R1K1 (UniProtKB/Swiss-Prot),   Q9R1K0 (UniProtKB/Swiss-Prot),   Q9R1J9 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038940996   ⟸   XM_039085068
- Peptide Label: isoform X3
- UniProtKB: Q9R1K2 (UniProtKB/Swiss-Prot),   Q9R1K1 (UniProtKB/Swiss-Prot),   Q9R1K0 (UniProtKB/Swiss-Prot),   Q9R1J9 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038940994   ⟸   XM_039085066
- Peptide Label: isoform X2
- UniProtKB: Q9R1K2 (UniProtKB/Swiss-Prot),   Q9R1K1 (UniProtKB/Swiss-Prot),   Q9R1K0 (UniProtKB/Swiss-Prot),   Q9R1J9 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038940999   ⟸   XM_039085071
- Peptide Label: isoform X6
- UniProtKB: Q9R1K2 (UniProtKB/Swiss-Prot),   Q9R1K1 (UniProtKB/Swiss-Prot),   Q9R1K0 (UniProtKB/Swiss-Prot),   Q9R1J9 (UniProtKB/Swiss-Prot),   A0A8I5Y1H9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038941004   ⟸   XM_039085076
- Peptide Label: isoform X12
- UniProtKB: Q9R1K2 (UniProtKB/Swiss-Prot),   Q9R1K1 (UniProtKB/Swiss-Prot),   Q9R1K0 (UniProtKB/Swiss-Prot),   Q9R1J9 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038941000   ⟸   XM_039085072
- Peptide Label: isoform X8
- UniProtKB: Q9R1K2 (UniProtKB/Swiss-Prot),   Q9R1K1 (UniProtKB/Swiss-Prot),   Q9R1K0 (UniProtKB/Swiss-Prot),   Q9R1J9 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038941003   ⟸   XM_039085075
- Peptide Label: isoform X11
- UniProtKB: Q9R1K2 (UniProtKB/Swiss-Prot),   Q9R1K1 (UniProtKB/Swiss-Prot),   Q9R1K0 (UniProtKB/Swiss-Prot),   Q9R1J9 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038941002   ⟸   XM_039085074
- Peptide Label: isoform X9
- UniProtKB: Q9R1K2 (UniProtKB/Swiss-Prot),   Q9R1K1 (UniProtKB/Swiss-Prot),   Q9R1K0 (UniProtKB/Swiss-Prot),   Q9R1J9 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSRNOP00000077386   ⟸   ENSRNOT00000097791
RefSeq Acc Id: XP_063124390   ⟸   XM_063268320
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063124389   ⟸   XM_063268319
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063124391   ⟸   XM_063268321
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063124392   ⟸   XM_063268322
- Peptide Label: isoform X13
Protein Domains
EGF-like   Teneurin N-terminal

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:727907 AgrOrtholog
BioCyc Gene G2FUF-25535 BioCyc
Ensembl Genes ENSRNOG00000027341 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000011922.9 UniProtKB/TrEMBL
  ENSRNOT00000097791.1 UniProtKB/TrEMBL
Gene3D-CATH 2.120.10.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Laminin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RHS repeat-associated core UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro 6-blade_b-propeller_TolB-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CarboxyPept-like_regulatory UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF-like_Ca-bd_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IPR006530 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rhs_assc_core UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ten_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tox-GHH_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:117242 UniProtKB/Swiss-Prot
NCBI Gene 117242 ENTREZGENE
PANTHER PTHR11219:SF8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TENEURIN AND N-ACETYLGLUCOSAMINE-1-PHOSPHODIESTER ALPHA-N-ACETYLGLUCOSAMINIDASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ten_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tox-GHH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tenm2 PhenoGen
PROSITE EGF_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TENEURIN_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000027341 RatGTEx
SMART EGF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF_CA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP DPP6 N-terminal domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NHL repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF49464 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A096P6L6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5Y1H9 ENTREZGENE, UniProtKB/TrEMBL
  A6HDJ4_RAT UniProtKB/TrEMBL
  Q9R1J9 ENTREZGENE
  Q9R1K0 ENTREZGENE
  Q9R1K1 ENTREZGENE
  Q9R1K2 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q9R1J9 UniProtKB/Swiss-Prot
  Q9R1K0 UniProtKB/Swiss-Prot
  Q9R1K1 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Tenm2  teneurin transmembrane protein 2  LOC102551468  teneurin-2-like  Data merged from RGD:7596091 737654 PROVISIONAL
2013-12-18 LOC102551468  teneurin-2-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2012-10-11 Tenm2  teneurin transmembrane protein 2  Odz2  odz, odd Oz/ten-m homolog 2 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-09 Odz2  odz, odd Oz/ten-m homolog 2 (Drosophila)  Odz2  odd Oz/ten-m homolog 2 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-08 Odz2  odd Oz/ten-m homolog 2 (Drosophila)      Symbol and Name status set to approved 1299863 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_expression expressed in many types of neurons, including pyramidal cells in the cerebral cortex and tufted cells in the olfactory bulb during development 1299591