Emp2 (epithelial membrane protein 2) - Rat Genome Database

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Gene: Emp2 (epithelial membrane protein 2) Rattus norvegicus
Analyze
Symbol: Emp2
Name: epithelial membrane protein 2
RGD ID: 1359629
Description: Predicted to enable integrin binding activity and protein kinase binding activity. Predicted to be involved in several processes, including bleb assembly; early endosome to late endosome transport; and embryonic process involved in female pregnancy. Predicted to act upstream of or within positive regulation of cell-matrix adhesion and positive regulation of integrin-mediated signaling pathway. Located in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in nephrotic syndrome type 10. Orthologous to human EMP2 (epithelial membrane protein 2); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: EMP-2; MGC93695
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2105,360,073 - 5,394,734 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl105,360,073 - 5,394,733 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1010,056,350 - 10,090,896 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0109,577,512 - 9,612,176 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0105,215,785 - 5,250,323 (+)NCBIRnor_WKY
Rnor_6.0105,433,248 - 5,467,840 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl105,433,248 - 5,467,839 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0104,254,720 - 4,288,863 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4105,311,157 - 5,348,038 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1105,311,156 - 5,348,037 (+)NCBI
Celera104,376,437 - 4,410,636 (+)NCBICelera
Cytogenetic Map10q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-acetamidofluorene  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
8-Br-cAMP  (ISO)
acetamide  (EXP)
acrylamide  (ISO)
all-trans-retinoic acid  (EXP,ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-hexachlorocyclohexane  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
carbon nanotube  (ISO)
carbonyl sulfide  (EXP)
choline  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dextran sulfate  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
etoposide  (ISO)
folic acid  (ISO)
furan  (EXP,ISO)
genistein  (ISO)
gentamycin  (EXP)
graphite  (EXP)
indometacin  (ISO)
L-methionine  (ISO)
lipopolysaccharide  (ISO)
menadione  (ISO)
methylmercury chloride  (ISO)
mitomycin C  (ISO)
N-methyl-4-phenylpyridinium  (EXP)
N-nitrosodiethylamine  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
progesterone  (ISO)
rotenone  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
Soman  (EXP)
sulforaphane  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
testosterone  (ISO)
tetrachloroethene  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichostatin A  (ISO)
valproic acid  (ISO)
vancomycin  (ISO)
vincaleukoblastine  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
apical part of cell  (ISO,ISS)
apical plasma membrane  (ISO,ISS)
caveola  (ISO,ISS)
cell surface  (ISO,ISS)
cytoplasm  (IBA,IDA,ISO)
cytoplasmic vesicle  (ISO,ISS)
cytosol  (IEA)
Golgi apparatus  (ISO,ISS)
Golgi membrane  (IEA)
membrane raft  (ISO,ISS)
nucleus  (IDA)
perinuclear region of cytoplasm  (IEA)
plasma membrane  (IBA,ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Mutations in EMP2 cause childhood-onset nephrotic syndrome. Gee HY, etal., Am J Hum Genet. 2014 Jun 5;94(6):884-90. doi: 10.1016/j.ajhg.2014.04.010. Epub 2014 May 8.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
8. The tetraspan protein epithelial membrane protein-2 interacts with beta1 integrins and regulates adhesion. Wadehra M, etal., J Biol Chem 2002 Oct 25;277(43):41094-100. Epub 2002 Aug 19.
Additional References at PubMed
PMID:12107182   PMID:12763482   PMID:14978215   PMID:16216233   PMID:16487956   PMID:18400107   PMID:18469192   PMID:19494199   PMID:22728127   PMID:23334331   PMID:23439602   PMID:34495369  


Genomics

Comparative Map Data
Emp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2105,360,073 - 5,394,734 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl105,360,073 - 5,394,733 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1010,056,350 - 10,090,896 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0109,577,512 - 9,612,176 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0105,215,785 - 5,250,323 (+)NCBIRnor_WKY
Rnor_6.0105,433,248 - 5,467,840 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl105,433,248 - 5,467,839 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0104,254,720 - 4,288,863 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4105,311,157 - 5,348,038 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1105,311,156 - 5,348,037 (+)NCBI
Celera104,376,437 - 4,410,636 (+)NCBICelera
Cytogenetic Map10q11NCBI
EMP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381610,528,422 - 10,580,598 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1610,528,422 - 10,580,632 (-)EnsemblGRCh38hg38GRCh38
GRCh371610,622,279 - 10,674,455 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361610,533,476 - 10,582,040 (-)NCBINCBI36Build 36hg18NCBI36
Build 341610,533,475 - 10,582,040NCBI
Celera1610,790,221 - 10,843,547 (-)NCBICelera
Cytogenetic Map16p13.13NCBI
HuRef1610,541,152 - 10,593,355 (-)NCBIHuRef
CHM1_11610,622,208 - 10,674,485 (-)NCBICHM1_1
T2T-CHM13v2.01610,564,353 - 10,616,512 (-)NCBIT2T-CHM13v2.0
Emp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391610,099,613 - 10,131,832 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1610,099,613 - 10,131,832 (-)EnsemblGRCm39 Ensembl
GRCm381610,281,749 - 10,313,968 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1610,281,749 - 10,313,968 (-)EnsemblGRCm38mm10GRCm38
MGSCv371610,281,842 - 10,314,061 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361610,195,337 - 10,227,546 (-)NCBIMGSCv36mm8
Celera1610,915,145 - 10,947,388 (-)NCBICelera
Cytogenetic Map16A1NCBI
cM Map165.54NCBI
Emp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554427,826,738 - 7,860,028 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554427,826,967 - 7,862,035 (+)NCBIChiLan1.0ChiLan1.0
EMP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11610,694,425 - 10,744,744 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1610,694,425 - 10,744,744 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0169,465,589 - 9,517,593 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
EMP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1632,026,908 - 32,060,447 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl632,026,916 - 32,057,693 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha633,409,027 - 33,443,115 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0632,209,301 - 32,239,471 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1632,023,125 - 32,057,265 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0631,897,121 - 31,930,062 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0632,321,409 - 32,355,603 (+)NCBIUU_Cfam_GSD_1.0
Emp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344111,008,817 - 111,016,703 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365308,854,203 - 8,862,126 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049365308,854,266 - 8,862,127 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EMP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl332,450,604 - 32,492,721 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1332,449,496 - 32,493,245 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2333,257,119 - 33,291,408 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EMP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1510,013,722 - 10,060,880 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl510,014,121 - 10,028,949 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606820,100,209 - 20,153,152 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Emp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248247,879,425 - 7,915,472 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248247,881,258 - 7,915,010 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Emp2
253 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:512
Count of miRNA genes:268
Interacting mature miRNAs:344
Transcripts:ENSRNOT00000003615
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634329Pia15Pristane induced arthritis QTL 153.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10124158324Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135225947Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138328221Rat
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142315980Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
1549898Neuinf3Neuroinflammation QTL 326.4nervous system integrity trait (VT:0010566)MHC Class II RT1A-positive spinal cord ventral horn area to total spinal cord ventral horn area ratio (CMO:0001980)1034063205387112Rat
1576304Schws7Schwannoma susceptibility QTL 70.0115nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)10476552719816042Rat
631828Alc5Alcohol consumption QTL 52.4consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10514402717245662Rat
737820Alc9Alcohol consumption QTL 92.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10514402719233348Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)cortical volumetric bone mineral density (CMO:0001730)10538701450387014Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10538701450387014Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10538701450387014Rat
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat

Markers in Region
D10Mit14  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2105,387,014 - 5,387,112 (+)MAPPERmRatBN7.2
Rnor_6.0105,460,119 - 5,460,218NCBIRnor6.0
Rnor_5.0104,281,142 - 4,281,241UniSTSRnor5.0
RGSC_v3.4105,339,759 - 5,339,859RGDRGSC3.4
RGSC_v3.4105,339,760 - 5,339,859UniSTSRGSC3.4
RGSC_v3.1105,339,760 - 5,339,859RGD
Celera104,402,915 - 4,403,014UniSTS
RH 3.4 Map1068.5UniSTS
RH 3.4 Map1068.5RGD
RH 2.0 Map100.0RGD
Cytogenetic Map10q11UniSTS
D10Rat200  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2105,359,011 - 5,359,247 (+)MAPPERmRatBN7.2
Rnor_6.0105,432,193 - 5,432,428NCBIRnor6.0
Rnor_5.0104,253,665 - 4,253,900UniSTSRnor5.0
RGSC_v3.4105,310,101 - 5,310,337RGDRGSC3.4
RGSC_v3.4105,310,102 - 5,310,337UniSTSRGSC3.4
RGSC_v3.1105,310,032 - 5,310,365RGD
Celera104,375,382 - 4,375,617UniSTS
FHH x ACI Map104.54RGD
FHH x ACI Map104.54UniSTS
Cytogenetic Map10q11UniSTS
RH134327  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2105,394,295 - 5,394,515 (+)MAPPERmRatBN7.2
Rnor_6.0105,467,402 - 5,467,621NCBIRnor6.0
Rnor_5.0104,288,425 - 4,288,644UniSTSRnor5.0
RGSC_v3.4105,347,600 - 5,347,819UniSTSRGSC3.4
Celera104,410,198 - 4,410,417UniSTS
Cytogenetic Map10q11UniSTS
RH143053  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2105,392,146 - 5,392,262 (+)MAPPERmRatBN7.2
Rnor_6.0105,465,253 - 5,465,368NCBIRnor6.0
Rnor_5.0104,286,276 - 4,286,391UniSTSRnor5.0
RGSC_v3.4105,345,451 - 5,345,566UniSTSRGSC3.4
Celera104,408,049 - 4,408,164UniSTS
RH 3.4 Map1055.2UniSTS
Cytogenetic Map10q11UniSTS
BE112998  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2105,392,311 - 5,392,507 (+)MAPPERmRatBN7.2
Rnor_6.0105,465,418 - 5,465,613NCBIRnor6.0
Rnor_5.0104,286,441 - 4,286,636UniSTSRnor5.0
RGSC_v3.4105,345,616 - 5,345,811UniSTSRGSC3.4
Celera104,408,214 - 4,408,409UniSTS
RH 3.4 Map1068.2UniSTS
Cytogenetic Map10q11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 39 2 2 6 2 4 25 27 11
Low 1 4 55 39 13 39 8 11 70 10 13 8
Below cutoff 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000003615   ⟹   ENSRNOP00000003615
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl105,360,073 - 5,394,733 (+)Ensembl
Rnor_6.0 Ensembl105,433,248 - 5,467,839 (+)Ensembl
RefSeq Acc Id: NM_001007721   ⟹   NP_001007722
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2105,360,073 - 5,394,734 (+)NCBI
Rnor_6.0105,433,248 - 5,467,840 (+)NCBI
Rnor_5.0104,254,720 - 4,288,863 (+)NCBI
RGSC_v3.4105,311,157 - 5,348,038 (+)RGD
Celera104,376,437 - 4,410,636 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001007722 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH81865 (Get FASTA)   NCBI Sequence Viewer  
  EDL96228 (Get FASTA)   NCBI Sequence Viewer  
  Q66HH2 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001007722   ⟸   NM_001007721
- UniProtKB: Q66HH2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000003615   ⟸   ENSRNOT00000003615

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q66HH2-F1-model_v2 AlphaFold Q66HH2 1-172 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696947
Promoter ID:EPDNEW_R7472
Type:initiation region
Name:Emp2_1
Description:epithelial membrane protein 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0105,433,256 - 5,433,316EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359629 AgrOrtholog
BioCyc Gene G2FUF-26127 BioCyc
Ensembl Genes ENSRNOG00000002664 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSRNOP00000003615 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000003615 ENTREZGENE, UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7096470 IMAGE-MGC_LOAD
InterPro EMP_2 UniProtKB/Swiss-Prot
  PMP22/EMP/MP20/Claudin UniProtKB/Swiss-Prot
  PMP22_EMP_MP20 UniProtKB/Swiss-Prot
KEGG Report rno:360468 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93695 IMAGE-MGC_LOAD
NCBI Gene 360468 ENTREZGENE
PANTHER PTHR10671:SF32 UniProtKB/Swiss-Prot
Pfam PMP22_Claudin UniProtKB/Swiss-Prot
PhenoGen Emp2 PhenoGen
PRINTS EPMEMFAMILY UniProtKB/Swiss-Prot
  EPMEMPROT2 UniProtKB/Swiss-Prot
PROSITE PMP22_1 UniProtKB/Swiss-Prot
  PMP22_2 UniProtKB/Swiss-Prot
UniProt EMP2_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-07-29 Emp2  epithelial membrane protein 2      Symbol and Name status set to provisional 70820 PROVISIONAL