 Gene Ontology Annotations | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Cellular Component
Molecular Function
Molecular Pathway Annotations |
Welcome {{ username}}
Message Center
{{ messageCount }} Messages
Watched Genes
{{$index + 1}}. {{ watchedObject.symbol }} (RGD ID:{{watchedObject.rgdId}})
Watched Ontology Terms
{{gene.symbol}}: {{ gene.description }}
Save List to My RGD
| Create Name: | |
| Description: |
|
| Save what matters to you |
| {{ loginError }} |
| Sign in with your RGD account |
| Create New Account | Recover Password |
{{ watchLinkText }}
Select categories you would like to watch. Updates to this gene will be send to {{ username }}
Analyze GeneStrainQTL List |
 Gene Annotator (Functional Annotation) unavailable |
 Gene Annotator (Annotation Distribution) unavailable |
 Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable |
Gene Annotator (Functional Annotation) |
Gene Annotator (Annotation Distribution) |
Variant Visualizer (Genomic Variants) |
 InterViewer (Protein-Protein Interactions) unavailable |
 Gviewer (Genome Viewer) unavailable |
 Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable |
InterViewer (Protein-Protein Interactions) |
GViewer (Genome Viewer) |
Variant Visualizer (Damaging Variants) |
 Gene Annotator (Annotation Comparison) unavailable |
 OLGA (Gene List Generator) unavailable |
 |
Gene Annotator (Annotation Comparison) |
OLGA (Gene List Generator) |
Excel (Download) |
 MOET (Multi-Ontology Enrichement) unavailable |
 GOLF (Gene-Ortholog Location Finder) unavailable |
|
MOET (Multi-Ontology Enrichement) |
GOLF (Gene-Ortholog Location Finder) |
Cellular Component
Molecular Function
Molecular Pathway AnnotationsGene-Chemical Interaction Annotations
|
|
|
Gene Ontology AnnotationsBiological Process
|
|
Cellular Component
|
|
Molecular Function
|
|
Molecular Pathway AnnotationsReferences - curated| 1. | Fukada T, etal., Biosci Biotechnol Biochem 1994 Jan;58(1):200-1. |
| 2. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
| 3. | MGD data from the GO Consortium |
| 4. | NCBI rat LocusLink and RefSeq merged data July 26, 2002 |
| 5. | Pipeline to import KEGG annotations from KEGG into RGD |
| 6. | RGD automated data pipeline |
| 7. | RGD automated import pipeline for gene-chemical interactions |
| 8. | Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11. |
References - uncurated| PubMed | 1421759 1702225 8290590 9781684 12878032 12913295 15489334 19199708 19946888 20378551 23376485 23533145 24769233 |
Genomics
Comparative Map Data| Mgat1 (Rattus norvegicus - Norway rat) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| MGAT1 (Homo sapiens - human) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Mgat1 (Mus musculus - house mouse) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Mgat1 (Chinchilla lanigera - long-tailed chinchilla) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| MGAT1 (Pan paniscus - bonobo/pygmy chimpanzee) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| MGAT1 (Canis lupus familiaris - dog) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Mgat1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| MGAT1 (Sus scrofa - pig) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| MGAT1 (Chlorocebus sabaeus - green monkey) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Mgat1 (Heterocephalus glaber - naked mole-rat) |
No map positions available. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Position Markers| BF392858 |
|
QTLs in Region (Rnor_6.0)| The following QTLs overlap with this region. |  | Full Report | | CSV | | TAB | | Printer | | Gviewer |
miRNA Target Status
Predicted Target Of
| The detailed report is available here: | | Full Report | | CSV | | TAB | | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
||||||||
Expression
RNA-SEQ ExpressionHigh: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM
| testis | heart | brain | ovary | uterus | skeletal muscle tissue | colon | gastrocnemius | forebrain | hindbrain | lung | spleen | liver | kidney | adrenal gland | thymus | |
| High | ||||||||||||||||
| Medium | 22 | 43 | 23 | 15 | 4 | 3 | 3 | 8 | 26 | 25 | 11 | 11 | 41 | 35 | 8 | 8 |
| Low | ||||||||||||||||
| Below cutoff |
View RNA-SEQ Expression Data
Sequence
Nucleotide Sequences| RefSeq Transcripts | NM_030861 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| XM_006246182 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006246183 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006246184 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006246185 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_008767715 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | AAHX01063712 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| AB012874 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AB012875 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AB012876 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AB012877 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AB012878 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AB100423 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AB100424 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AB100425 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AC133273 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| BC074010 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| CH473948 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| D16302 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Reference Sequences
| RefSeq Acc Id: | ENSRNOT00000052360 ⟹ ENSRNOP00000044560 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
|
| RefSeq Acc Id: | ENSRNOT00000085832 ⟹ ENSRNOP00000068827 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
|
| RefSeq Acc Id: | NM_030861 ⟹ NP_110488 | ||||||||||||||||||||||||
| RefSeq Status: | PROVISIONAL | ||||||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||||||
| Position: |
|
||||||||||||||||||||||||
| Sequence: |
CTCCAGGGAAGCAACAGAGAGAAGAAAAGAAAGGTACATGGCTACTTCCCACTCTCAGCCTAGAhide sequence |
| RefSeq Acc Id: | XM_006246182 ⟹ XP_006246244 | ||||||||||||||
| RefSeq Status: | |||||||||||||||
| Type: | CODING | ||||||||||||||
| Position: |
|
||||||||||||||
| Sequence: |
GGGGGTCGAGGGGGTGGGGCTTGCGGGCGGCTGGGACCCGGCCCCGGCCTGGATCTGGAGCCGGhide sequence |
| RefSeq Acc Id: | XM_006246183 ⟹ XP_006246245 | ||||||||||||||
| RefSeq Status: | |||||||||||||||
| Type: | CODING | ||||||||||||||
| Position: |
|
||||||||||||||
| Sequence: |
AGAAAAAGAAAGAAATGAAACGGCCAGCTGGCTCTTACCCACTTTGGGCAGCAGGTGTTTCCTChide sequence |
| RefSeq Acc Id: | XM_006246184 ⟹ XP_006246246 | ||||||||||||||
| RefSeq Status: | |||||||||||||||
| Type: | CODING | ||||||||||||||
| Position: |
|
||||||||||||||
| Sequence: |
AGAAAAAGAAAGAAATGAAACGGCCAGCTGGCTCTTACCCACTTTGGGCAGCAGGTGTTTCCTChide sequence |
| RefSeq Acc Id: | XM_006246185 ⟹ XP_006246247 | ||||||||||||||
| RefSeq Status: | |||||||||||||||
| Type: | CODING | ||||||||||||||
| Position: |
|
||||||||||||||
| Sequence: |
GGGGGTCGAGGGGGTGGGGCTTGCGGGCGGCTGGGACCCGGCCCCGGCCTGGATCTGGAGCCGGhide sequence |
| RefSeq Acc Id: | XM_008767715 ⟹ XP_008765937 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
|
|||||||||
| Sequence: |
GCAGTAAGGGACTGAGTCCTAGCCGCAGCGGAAGGGAGGTTTCTGAGTATAGGGAGGGTCTCAGhide sequence |
Protein Sequences| Protein RefSeqs | NP_110488 | (Get FASTA) | NCBI Sequence Viewer |
| XP_006246244 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006246245 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006246246 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006246247 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_008765937 | (Get FASTA) | NCBI Sequence Viewer | |
| GenBank Protein | AAH74010 | (Get FASTA) | NCBI Sequence Viewer |
| BAA03807 | (Get FASTA) | NCBI Sequence Viewer | |
| EDM04213 | (Get FASTA) | NCBI Sequence Viewer | |
| EDM04214 | (Get FASTA) | NCBI Sequence Viewer | |
| EDM04215 | (Get FASTA) | NCBI Sequence Viewer | |
| EDM04216 | (Get FASTA) | NCBI Sequence Viewer | |
| EDM04217 | (Get FASTA) | NCBI Sequence Viewer | |
| EDM04218 | (Get FASTA) | NCBI Sequence Viewer | |
| Q09325 | (Get FASTA) | NCBI Sequence Viewer |
Reference Sequences
| RefSeq Acc Id: | NP_110488 ⟸ NM_030861 |
| - UniProtKB: | Q09325 (UniProtKB/Swiss-Prot) |
| - Sequence: |
MLKKQSAGLVLWGAIIFVGWNALLLLFFWTRPAPGRLPSDSALGDDPASLTREVIHLAEDAEAEhide sequence |
| RefSeq Acc Id: | XP_006246247 ⟸ XM_006246185 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | Q09325 (UniProtKB/Swiss-Prot) |
| - Sequence: |
MLKKQSAGLVLWGAIIFVGWNALLLLFFWTRPAPGRLPSDSALGDDPASLTREVIHLAEDAEAEhide sequence |
| RefSeq Acc Id: | XP_006246244 ⟸ XM_006246182 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | Q09325 (UniProtKB/Swiss-Prot) |
| - Sequence: |
MLKKQSAGLVLWGAIIFVGWNALLLLFFWTRPAPGRLPSDSALGDDPASLTREVIHLAEDAEAEhide sequence |
| RefSeq Acc Id: | XP_006246246 ⟸ XM_006246184 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | Q09325 (UniProtKB/Swiss-Prot) |
| - Sequence: |
MLKKQSAGLVLWGAIIFVGWNALLLLFFWTRPAPGRLPSDSALGDDPASLTREVIHLAEDAEAEhide sequence |
| RefSeq Acc Id: | XP_006246245 ⟸ XM_006246183 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | Q09325 (UniProtKB/Swiss-Prot) |
| - Sequence: |
MLKKQSAGLVLWGAIIFVGWNALLLLFFWTRPAPGRLPSDSALGDDPASLTREVIHLAEDAEAEhide sequence |
| RefSeq Acc Id: | XP_008765937 ⟸ XM_008767715 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | Q09325 (UniProtKB/Swiss-Prot) |
| - Sequence: |
MLKKQSAGLVLWGAIIFVGWNALLLLFFWTRPAPGRLPSDSALGDDPASLTREVIHLAEDAEAEhide sequence |
| RefSeq Acc Id: | ENSRNOP00000068827 ⟸ ENSRNOT00000085832 |
| RefSeq Acc Id: | ENSRNOP00000044560 ⟸ ENSRNOT00000052360 |
TranscriptomePromoters| RGD ID: | 13697156 | |||||||||
| Promoter ID: | EPDNEW_R7664 | |||||||||
| Type: | initiation region | |||||||||
| Name: | Mgat1_1 | |||||||||
| Description: | mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase | |||||||||
| SO ACC ID: | SO:0000170 | |||||||||
| Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | |||||||||
| Experiment Methods: | Single-end sequencing. | |||||||||
| Position: |
|
Strain Variation
Strain Sequence Variants (Rnor 6.0)
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
Damaging VariantsAssembly: Rnor_5.0
| Chromosome | Start Pos | End Pos | Reference Nucleotide | Variant Nucleotide | Variant Type | Strain |
| 10 | 34311673 | 34311674 | C | T | snv | FHH/EurMcwi (MCW), FHL/EurMcwi (MCW) |
| 10 | 34311791 | 34311792 | C | A | snv | IS/Kyo (KyushuU), IS-Tlk/Kyo (KyushuU), ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW) |
| 10 | 34312348 | 34312349 | G | A | snv | FHL/EurMcwi (MCW), FHH/EurMcwi (MCW) |
| 10 | 34312453 | 34312454 | T | A | snv | FHL/EurMcwi (MCW), FHH/EurMcwi (MCW) |
Assembly: Rnor_6.0
| Chromosome | Start Pos | End Pos | Reference Nucleotide | Variant Nucleotide | Variant Type | Strain |
| 10 | 34535356 | 34535357 | C | T | snv | FHL/EurMcwi (MCW), FHH/EurMcwi (MCW) |
| 10 | 34535474 | 34535475 | C | A | snv | ACI/EurMcwi (MCW), ACI/N (MCW), ACI/EurMcwi (RGD), COP/CrCrl (MCW & UW) |
| 10 | 34536031 | 34536032 | G | A | snv | FHH/EurMcwi (MCW), FHL/EurMcwi (MCW) |
| 10 | 34536136 | 34536137 | T | A | snv | FHH/EurMcwi (MCW), FHL/EurMcwi (MCW) |
Assembly: RGSC_v3.4
| Chromosome | Start Pos | End Pos | Reference Nucleotide | Variant Nucleotide | Variant Type | Strain |
| 10 | 34722474 | 34722475 | C | T | snv | FHH/EurMcwi (MDC), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW) |
| 10 | 34722592 | 34722593 | C | A | snv | COP/CrCrl (MCW & UW), ACI/N (KNAW), ACI/EurMcwi (MCW) |
| 10 | 34723149 | 34723150 | G | A | snv | FHL/EurMcwi (MCW), FHH/EurMcwi (MDC), FHH/EurMcwi (MCW) |
| 10 | 34723254 | 34723255 | T | A | snv | FHL/EurMcwi (MCW), FHH/EurMcwi (MCW), FHH/EurMcwi (MDC) |
Additional Information
External Database Links| Database | Acc Id | Source(s) |
| AGR Gene | RGD:620097 | AgrOrtholog |
| Ensembl Genes | ENSRNOG00000031208 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot |
| Ensembl Protein | ENSRNOP00000044560 | ENTREZGENE, UniProtKB/Swiss-Prot |
| ENSRNOP00000068827 | ENTREZGENE, UniProtKB/Swiss-Prot | |
| Ensembl Transcript | ENSRNOT00000052360 | ENTREZGENE, UniProtKB/Swiss-Prot |
| ENSRNOT00000085832 | ENTREZGENE, UniProtKB/Swiss-Prot | |
| Gene3D-CATH | 3.90.550.10 | UniProtKB/Swiss-Prot |
| IMAGE_CLONE | IMAGE:7100030 | IMAGE-MGC_LOAD |
| InterPro | Glyco_trans_13 | UniProtKB/Swiss-Prot |
| Nucleotide-diphossugar_trans | UniProtKB/Swiss-Prot | |
| KEGG Report | rno:81519 | UniProtKB/Swiss-Prot |
| MGC_CLONE | MGC:91661 | IMAGE-MGC_LOAD |
| NCBI Gene | 81519 | ENTREZGENE |
| Pfam | GNT-I | UniProtKB/Swiss-Prot |
| PhenoGen | Mgat1 | PhenoGen |
| Superfamily-SCOP | SSF53448 | UniProtKB/Swiss-Prot |
| UniGene | Rn.2712 | ENTREZGENE |
| UniProt | MGAT1_RAT | UniProtKB/Swiss-Prot, ENTREZGENE |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2019-09-13 | Mgat1 | alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase | Mgat1 | mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2008-08-29 | Mgat1 | mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase | Mgat1 | mannoside acetylglucosaminyltransferase 1 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2006-03-30 | Mgat1 | mannoside acetylglucosaminyltransferase 1 | Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase | Name updated | 1299863 | APPROVED | |
| 2005-01-20 | Mgat1 | Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase | N-acetylglucosaminyltransferase I | Name updated | 1299863 | APPROVED | |
| 2002-08-07 | Mgat1 | N-acetylglucosaminyltransferase I | Symbol and Name status set to provisional | 70820 | PROVISIONAL |
RGD Curation Notes| Note Type | Note | Reference |
|---|---|---|
| gene_expression | expressed in liver | 729009 |
 |
| More on Mgat1 | |
|
Alliance Gene |
|
NCBI Gene |
|
Ensembl Gene |
|
|
JBrowse: rn5 rn6 |
|
NCBI Genome Data Viewer |
| RGD Object Information | |
| RGD ID: | 620097 |
| Created: | 2002-08-06 |
| Species: | Rattus norvegicus |
| Last Modified: | 2019-11-27 |
| Status: | ACTIVE |
