Hist3h2ba (histone cluster 3, H2ba)

Functional Annotation unavailable	Annotation Distribution unavailable	Genomic Variants unavailble for Mouse Genomic Variants unavailable
Functional Annotation	Annotation Distribution	Genomic Variants

Protein-Protein Interactions unavailable	Genome Viewer unavailable	Damaging Variants unavailble for Mouse Damaging Variants unavailable
Protein-Protein Interactions	Genome Viewer	Damaging Variants

Annotation Comparison unavailable	OLGA unavailable
Annotation Comparison	OLGA	Excel (Download)

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Gene: Hist3h2ba (histone cluster 3, H2ba) Rattus norvegicus

Analyze

General
Array IDs
References

Symbol:

Hist3h2ba

Name:

histone cluster 3, H2ba

Description:

Predicted to have DNA binding activity. Predicted to be involved in nucleosome assembly. Predicted to localize to the nucleosome and nucleus. Orthologous to human HIST3H2BB (histone cluster 3 H2B family member b); PARTICIPATES IN systemic lupus erythematosus pathway; .

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

histone 3, H2ba; LOC303175

Orthologs:

No known orthologs.

homologs ...

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Other homologs ²				less info ...
Homo sapiens (human):	H2BC5 (H2B clustered histone 5)	HGNC	HomoloGene, OrthoDB
Homo sapiens (human):	H2BC10 (H2B clustered histone 10)	HGNC	OrthoDB
Homo sapiens (human):	H2BC13 (H2B clustered histone 13)	HGNC	OrthoDB
Homo sapiens (human):	H2BC15 (H2B clustered histone 15)	HGNC	OrthoDB
Homo sapiens (human):	H2BC9 (H2B clustered histone 9)	HGNC	OrthoDB
Homo sapiens (human):	H2BC17 (H2B clustered histone 17)	HGNC	OrthoDB
Homo sapiens (human):	H2BC21 (H2B clustered histone 21)	HGNC	OrthoDB
Homo sapiens (human):	H2BC3 (H2B clustered histone 3)	HGNC	OrthoDB
Homo sapiens (human):	H2BC4 (H2B clustered histone 4)	HGNC	OrthoDB
Homo sapiens (human):	H2BC8 (H2B clustered histone 8)	HGNC	OrthoDB
Homo sapiens (human):	H2BC14 (H2B clustered histone 14)	HGNC	OrthoDB
Homo sapiens (human):	H2BC7 (H2B clustered histone 7)	HGNC	OrthoDB
Homo sapiens (human):	H2BC11 (H2B clustered histone 11)	HGNC	OrthoDB
Homo sapiens (human):	H2BC6 (H2B clustered histone 6)	HGNC	OrthoDB
Homo sapiens (human):	H2BFS (H2B histone family member S)	HGNC	OrthoDB
Homo sapiens (human):	H2BC12 (H2B clustered histone 12)	HGNC	OrthoDB
Alliance orthologs ³
Homo sapiens (human):	H2BU1 (H2B.U histone 1)	Alliance	DIOPT (OrthoFinder, PANTHER, PhylomeDB, TreeFam)
Mus musculus (house mouse):	Hist3h2ba (histone cluster 3, H2ba)	Alliance	DIOPT (Ensembl Compara, Hieranoid, InParanoid, OMA, OrthoFinder, OrthoInspector, PANTHER, PhylomeDB, TreeFam)
Danio rerio (zebrafish):	zgc:194989	Alliance	DIOPT (OMA, OrthoFinder, PANTHER, TreeFam)
Danio rerio (zebrafish):	hist2h2l (histone 2, H2, like)	Alliance	DIOPT (Hieranoid, InParanoid, OMA, OrthoFinder, PANTHER, PhylomeDB, TreeFam)
Danio rerio (zebrafish):	si:dkey-23a13.16	Alliance	DIOPT (OMA, OrthoFinder, TreeFam)
Danio rerio (zebrafish):	si:dkey-261m9.19	Alliance	DIOPT (OMA, OrthoFinder, PANTHER, TreeFam)
Danio rerio (zebrafish):	si:ch73-36p18.3	Alliance	DIOPT (OMA, OrthoFinder, TreeFam)
Danio rerio (zebrafish):	si:ch1073-159d7.5	Alliance	DIOPT (OMA, OrthoFinder, TreeFam)
Danio rerio (zebrafish):	si:dkey-108k21.27	Alliance	DIOPT (OMA, OrthoFinder, TreeFam)
Danio rerio (zebrafish):	si:dkey-23a13.1	Alliance	DIOPT (OMA, OrthoFinder, TreeFam)
Danio rerio (zebrafish):	si:ch211-113a14.29	Alliance	DIOPT (OMA, OrthoFinder, TreeFam)
Danio rerio (zebrafish):	si:dkey-108k21.11	Alliance	DIOPT (OMA, OrthoFinder, PANTHER, TreeFam)
Danio rerio (zebrafish):	hist1h2ba (histone cluster 1, H2ba)	Alliance	DIOPT (OrthoFinder, PANTHER, TreeFam)
Danio rerio (zebrafish):	si:ch73-368j24.8	Alliance	DIOPT (OMA, OrthoFinder, TreeFam)
Saccharomyces cerevisiae (baker's yeast):	HTB1	Alliance	DIOPT (Ensembl Compara, Hieranoid, InParanoid, OMA, OrthoFinder, OrthoInspector, PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	HTB2	Alliance	DIOPT (Ensembl Compara, Hieranoid, InParanoid, OMA, OrthoFinder, OrthoInspector, PhylomeDB)
Caenorhabditis elegans (roundworm):	his-41	Alliance	DIOPT (Ensembl Compara, Hieranoid, InParanoid, OMA, OrthoFinder, OrthoInspector, PANTHER)
Drosophila melanogaster (fruit fly):	His2B:CG33884	Alliance	DIOPT (Ensembl Compara, Hieranoid, InParanoid, OrthoFinder, OrthoInspector, PANTHER)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	10	45,289,741 - 45,290,370 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	10	45,047,288 - 45,047,917 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	45,238,123 - 45,238,752 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	10	45,251,775 - 45,267,335 (+)	NCBI
Celera	10	42,992,177 - 42,992,806 (+)	NCBI		Celera
Cytogenetic Map	10	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation (Toggle Annotation Detail/Summary View)

Gene Ontology Annotations

Biological Process

Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
nucleosome assembly		IBA	MGI:MGI:2448375 more ...	13792537	PMID:21873635	GO_Central

Cellular Component

Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
nucleosome		IEA	UniProtKB-KW:KW-0544	1600115	GO_REF:0000038	UniProt	GO_REF:0000038
nucleus		IEA	UniProtKB-SubCell:SL-0191	1600115	GO_REF:0000040	UniProt	GO_REF:0000040

Molecular Function

Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
DNA binding		IBA	PANTHER:PTN000603808, RGD:3855	13792537	PMID:21873635	GO_Central
protein heterodimerization activity		IEA	InterPro:IPR009072	1600115	GO_REF:0000002	InterPro	GO_REF:0000002

Molecular Pathway Annotations

Imported Annotations - KEGG (archival)

Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
systemic lupus erythematosus pathway		IEA		6907045		KEGG	rno:05322

Gene Ontology Annotations

Biological Process

nucleosome assembly (IBA)

Cellular Component

nucleosome (IEA)

nucleus (IEA)

Molecular Function

DNA binding (IBA)

protein heterodimerization activity (IEA)

Molecular Pathway Annotations

systemic lupus erythematosus pathway (IEA)

References - curated

1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	MGD data from the GO Consortium
3.	Pipeline to import KEGG annotations from KEGG into RGD
4.	RGD automated import pipeline for gene-chemical interactions

RGD Disease Portals

Hist3h2ba has been annotated in the following RGD Disease Portals.

Aging/Age-Related Disease Biological Processes

Developmental Disease Pathways

Immune and Inflammatory Pathways

Genomics

Position Markers

BE106696

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	10	45,290,133 - 45,290,320	NCBI	Rnor6.0
Rnor_5.0	10	45,047,680 - 45,047,867	UniSTS	Rnor5.0
RGSC_v3.4	10	45,238,515 - 45,238,702	UniSTS	RGSC3.4
Celera	10	42,992,569 - 42,992,756	UniSTS
Cytogenetic Map	10	q22	UniSTS
RH 3.4 Map	10	490.0	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631554	Bp133	Blood pressure QTL 133		0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	764421	66221621	Rat
2298544	Neuinf9	Neuroinflammation QTL 9	4.6		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	10	5877536	64401490	Rat
8662860	Vetf10	Vascular elastic tissue fragility QTL 10			artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	10	6229095	75983805	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6429075	99492409	Rat
1578761	Stresp21	Stress response QTL 21	3.3		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	7521450	52521450	Rat
2303118	Mamtr7	Mammary tumor resistance QTL 7		0.003	mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	10	9841807	108540162	Rat
9590310	Scort19	Serum corticosterone level QTL 19	6.3	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	12639513	57639513	Rat
9590268	Scort13	Serum corticosterone level QTL 13	3.26	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	12639513	57639513	Rat
9589136	Insul27	Insulin level QTL 27	10.46	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	10	12639513	57639513	Rat
2301967	Cm73	Cardiac mass QTL 73	4.55		heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	14827894	92423564	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14827894	107857673	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14827894	110992275	Rat
1354587	Kidm21	Kidney mass QTL 21	3.3		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	10	15375474	62469074	Rat
631564	Apr3	Acute phase response QTL 3	3.9		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	10	16468736	61468736	Rat
6893350	Bw99	Body weight QTL 99	0.87	0.16	body mass (VT:0001259)	body weight (CMO:0000012)	1	17121542	62121542	Rat
6893352	Bw100	Body weight QTL 100	0.33	0.6	body mass (VT:0001259)	body weight (CMO:0000012)	1	17121542	62121542	Rat
631532	Cm50	Cardiac mass QTL 50	6.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	10	18246394	53637634	Rat
1598852	Anxrr19	Anxiety related response QTL 19	5.07		body movement coordination trait (VT:0005424)	number of rearing movements in an experimental apparatus (CMO:0001752)	10	19402814	64402814	Rat
1554317	Bmd4	Bone mineral density QTL 4	9.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	20170031	102897474	Rat
70223	Bp57	Blood pressure QTL 57	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	21523906	83549467	Rat
70188	BpQTLcluster1	Blood pressure QTL cluster 1	4.864		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	1	21523906	90312401	Rat
70188	BpQTLcluster1	Blood pressure QTL cluster 1	4.864		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	21523906	90312401	Rat
70188	BpQTLcluster1	Blood pressure QTL cluster 1	4.864		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	21523906	90312401	Rat
70188	BpQTLcluster1	Blood pressure QTL cluster 1	4.864		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	21523906	90312401	Rat
70198	BpQTLcluster9	Blood pressure QTL cluster 9	2.94		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	21523906	90312401	Rat
1581497	Esta1	Estrogen-induced thymic atrophy QTL 1			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	21707766	64648311	Rat
724556	Pur2	Proteinuria QTL 2	5.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	22901497	93886300	Rat
1331762	Rf40	Renal function QTL 40	3.873		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	10	23861015	66539843	Rat
1331791	Cm31	Cardiac mass QTL 31	3.84606		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	23861015	112626471	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	24483076	107857673	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	24483076	107857673	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	24483076	107857673	Rat
634329	Pia15	Pristane induced arthritis QTL 15	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	24884084	47487910	Rat
70224	Eae3	Experimental allergic encephalomyelitis QTL 3	4.1		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	10	27237530	64648311	Rat
1298069	Bp168	Blood pressure QTL 168	5.5		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	10	27237530	101482600	Rat
631542	Bp82	Blood pressure QTL 82	6.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	27237530	102427718	Rat
2300171	Bmd58	Bone mineral density QTL 58	4.9	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	28789280	73789280	Rat
1600371	Mcs21	Mammary carcinoma susceptibility QTL 21	3		mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	10	30021354	54057745	Rat
2292441	Bp308	Blood pressure QTL 308			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	30099909	75099909	Rat
10402859	Bp381	Blood pressure QTL 381		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	30099909	75099909	Rat
724527	Bp148	Blood pressure QTL 148		0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	30983805	75983805	Rat
1576311	Pia26	Pristane induced arthritis QTL 26			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	31919397	78343192	Rat
1578779	Tcas10	Tongue tumor susceptibility QTL 10	3.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	10	33179030	78179030	Rat
631557	Bp136	Blood pressure QTL 136		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	33343192	78343192	Rat
1576319	Cia29	Collagen induced arthritis QTL 29			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	35139424	80139424	Rat
61332	Eau3	Experimental allergic uveoretinitis QTL 3		0.004	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	10	35669465	46851407	Rat
6893342	Cm78	Cardiac mass QTL 78	0.1	0.88	heart mass (VT:0007028)	heart weight as percentage of body weight (CMO:0000075)	10	36185929	82675365	Rat
631552	Vetf2	Vascular elastic tissue fragility QTL 2	4.5	0.0002	aorta elastic tissue integrity trait (VT:0010556)	artery internal elastic lamina non-tumorous lesion count (CMO:0001913)	10	36185929	95845311	Rat
1354614	Hpcl1	Hepatic cholesterol level QTL 1	3.3		liver cholesterol amount (VT:0010498)	liver cholesterol level (CMO:0001597)	10	36584373	53645194	Rat
1358897	Stresp6	Stress response QTL 6	4.17	0.022	blood norepinephrine amount (VT:0005663)	plasma norepinephrine level (CMO:0001010)	10	36584373	66539843	Rat
61441	Btemp1	Thermal response to stress QTL 1	4		body temperature trait (VT:0005535)	core body temperature (CMO:0001036)	10	36584560	66015527	Rat
2317042	Aia20	Adjuvant induced arthritis QTL 20	3.38		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	10	40514044	85514044	Rat
2317043	Aia7	Adjuvant induced arthritis QTL 7	3.82		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	10	40514044	85514044	Rat
1576308	Schws1	Schwannoma susceptibility QTL 1		0.0041	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	10	41260363	106105607	Rat
631269	Cia22	Collagen induced arthritis QTL 22	8.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	41260363	107857673	Rat
631270	Cia23	Collagen induced arthritis QTL 23	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	41260363	107857673	Rat
8552805	Bw145	Body weight QTL 145	2.2		body mass (VT:0001259)	ratio of change in body weight to total body weight (CMO:0002216)	10	43188659	81042642	Rat
1298078	Stresp5	Stress response QTL 5	2.99	0.00025	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	43289657	108540162	Rat
61463	Bp12	Blood pressure QTL 12	6.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	43704955	88704955	Rat
11528628	Bss116	Bone structure and strength QTL 116	6.46	0.00000038	femur morphology trait (VT:0000559)	femur length (CMO:0000442)	10	45114283	45744081	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	94
Count of miRNA genes:	80
Interacting mature miRNAs:	87
Transcripts:	ENSRNOT00000066190
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Sequence

Nucleotide Sequences

RefSeq Transcripts	NM_001111127	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAHX01064183	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC099089	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

NM_001111127 ⟹ NP_001104597

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	45,289,741 - 45,290,370 (+)	NCBI
Rnor_5.0	10	45,047,288 - 45,047,917 (+)	NCBI
RGSC_v3.4	10	45,238,123 - 45,238,752 (+)	RGD
Celera	10	42,992,177 - 42,992,806 (+)	RGD

Sequence:

show sequence

TGTTCGTCTGGGTGCAGCCAGTGCAGCAGGATGCCGGAACCTTCCCGCTCCACTCCCGCGCCGA
AGAAGGGTTCCAAGAAAGCCATCACCAAGGCACAGAAAAAGGATGGCAAGAAACGCAAACGGGG
CCGCAAGGAGAGCTACTCCATCTACGTGTACAAGGTGCTGAAGCAGGTGCACCCGGACACCGGC
ATCTCGTCCAAGGCCATGGGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCA
GCGAGGCCTCCCGCCTGGCTCATTACAACAAGCGCTCGACCATCACGTCCCGCGAGGTGCAGAC
GGCCGTGCGCCTGCTGCTGCCTGGGGAGCTGGCCAAGCATGCCGTGTCGGAAGGCACCAAGGCA
GTCACCAAGTACACCAGTTCCAAGTGAGGCGCGGCGAGAGCGCCCCCAACCCAAAGGCTCTTTT
CAGAGCCACCTTCCAGGCTCAAAAAAGGAGCGTTCTGCCTAAGATTGTCATTCACCTGATGAAC
ATTGGGATGGGGTGGAAGAGAGGGAGGGAGGGGTTGTACTGGACCGCGGGACCCTGAGATATAA
TACCTCTTGTTCATAATGGTACATTAATAAATTTGTCTGGTTCAATTTTGGCCA

hide sequence

Protein Sequences

Protein RefSeqs	NP_001104597	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM04568	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_001104597 ⟸ NM_001111127
- UniProtKB:	D3ZNZ9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPEPSRSTPAPKKGSKKAITKAQKKDGKKRKRGRKESYSIYVYKVLKQVHPDTGISSKAMGIMN SFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK hide sequence

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13697226

Promoter ID:

EPDNEW_R7750

Type:

single initiation site

Name:

Hist3h2ba_1

Description:

histone cluster 3, H2ba

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	45,289,742 - 45,289,802	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 5.0)

ACI/EurMcwi (KNAW)

Visual

CSV

TAB

Printer

Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

ACI/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v1.3-14
Description:	Medical College of Wisconsin (Dr. Howard Jacob)

ACI/N (KNAW)

Visual

CSV

TAB

Printer

Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

BBDP/WorN (KNAW)

Visual

CSV

TAB

Printer

Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

BDIX.Cg-Tal/NemOda (KyushuU)

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Sequenced By:	Kyushu University (Dr. Mikita Suyama) Kyoto University (Dr. Takashi Kuramoto)
Platform:	Illumina NextSeq 500
Secondary Analysis:	BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:	NBRP-Rat/Kyoto University
Description:	Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:	Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.

BDIX/NemOda (KyushuU)

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Sequenced By:	Kyushu University (Dr. Mikita Suyama) Kyoto University (Dr. Takashi Kuramoto)
Platform:	Illumina NextSeq 500
Secondary Analysis:	BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:	NBRP-Rat/Kyoto University
Description:	Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:	Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.

BN-Lx/Cub (KNAW)

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Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

BN-Lx/CubPrin (KNAW)

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Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

BN/SsN (KNAW)

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Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

BN/SsNSlc (KyushuU)

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Sequenced By:	Kyushu University (Dr. Mikita Suyama) Kyoto University (Dr. Takashi Kuramoto)
Platform:	Illumina NextSeq 500
Secondary Analysis:	BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:	NBRP-Rat/Kyoto University
Description:	Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:	Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.

BUF/MNa (KyushuU)

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Sequenced By:	Kyushu University (Dr. Mikita Suyama) Kyoto University (Dr. Takashi Kuramoto)
Platform:	Illumina NextSeq 500
Secondary Analysis:	BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:	NBRP-Rat/Kyoto University
Description:	Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:	Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.

BUF/N (KNAW)

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Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v2.3-5
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

Crl:SD (UDEL)

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Secondary Analysis:	GATK (HaplotypeCaller v.3.1-1, VariantAnnotator v.3.1-1, SnpEff v.3.6)
Description:	Provided by Barthold at al

DA/BklArbNsi (KNAW)

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Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

DOB/Oda (KyushuU)

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Sequenced By:	Kyushu University (Dr. Mikita Suyama) Kyoto University (Dr. Takashi Kuramoto)
Platform:	Illumina NextSeq 500
Secondary Analysis:	BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:	NBRP-Rat/Kyoto University
Description:	Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:	Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.

F344/DuCrlCrlj (KyushuU)

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Sequenced By:	Kyushu University (Dr. Mikita Suyama) Kyoto University (Dr. Takashi Kuramoto)
Platform:	Illumina NextSeq 500
Secondary Analysis:	BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:	NBRP-Rat/Kyoto University
Description:	Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:	Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.

F344/Jcl (KyushuU)

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Sequenced By:	Kyushu University (Dr. Mikita Suyama) Kyoto University (Dr. Takashi Kuramoto)
Platform:	Illumina NextSeq 500
Secondary Analysis:	BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:	NBRP-Rat/Kyoto University
Description:	Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:	Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.

F344/NCrl (KNAW)

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Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

F344/NHsd (KNAW)

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Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

F344/NRrrc (Illumina) (KNAW)

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Platform:	Illumina
Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

F344/NRrrc (SOLiD) (KNAW)

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Platform:	SOLID
Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

F344/NSlc (KyushuU)

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Sequenced By:	Kyushu University (Dr. Mikita Suyama) Kyoto University (Dr. Takashi Kuramoto)
Platform:	Illumina NextSeq 500
Secondary Analysis:	BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:	NBRP-Rat/Kyoto University
Description:	Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:	Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.

F344/Stm (KyushuU)

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Sequenced By:	Kyushu University (Dr. Mikita Suyama) Kyoto University (Dr. Takashi Kuramoto)
Platform:	Illumina NextSeq 500
Secondary Analysis:	BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:	NBRP-Rat/Kyoto University
Description:	Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:	Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.

FHH/EurMcwi (KNAW)

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Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v1.3-14
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (KNAW)

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Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v1.3-14
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v2.3-5
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (KNAW)

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Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

HTX/Kyo (KyushuU)

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Sequenced By:	Kyushu University (Dr. Mikita Suyama) Kyoto University (Dr. Takashi Kuramoto)
Platform:	Illumina NextSeq 500
Secondary Analysis:	BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:	NBRP-Rat/Kyoto University
Description:	Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:	Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.

HWY/Slc (KyushuU)

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Sequenced By:	Kyushu University (Dr. Mikita Suyama) Kyoto University (Dr. Takashi Kuramoto)
Platform:	Illumina NextSeq 500
Secondary Analysis:	BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:	NBRP-Rat/Kyoto University
Description:	Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:	Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.

IS-Tlk/Kyo (KyushuU)

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Sequenced By:	Kyushu University (Dr. Mikita Suyama) Kyoto University (Dr. Takashi Kuramoto)
Platform:	Illumina NextSeq 500
Secondary Analysis:	BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:	NBRP-Rat/Kyoto University
Description:	Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:	Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.

IS/Kyo (KyushuU)

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Sequenced By:	Kyushu University (Dr. Mikita Suyama) Kyoto University (Dr. Takashi Kuramoto)
Platform:	Illumina NextSeq 500
Secondary Analysis:	BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:	NBRP-Rat/Kyoto University
Description:	Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:	Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.

KFRS3B/Kyo (KyushuU)

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Sequenced By:	Kyushu University (Dr. Mikita Suyama) Kyoto University (Dr. Takashi Kuramoto)
Platform:	Illumina NextSeq 500
Secondary Analysis:	BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:	NBRP-Rat/Kyoto University
Description:	Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:	Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.

LE/OrlBarth (UDEL)

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Secondary Analysis:	GATK (HaplotypeCaller v.3.1-1, VariantAnnotator v.3.1-1, SnpEff v.3.6)
Description:	Provided by Barthold at al

LE/Stm (Illumina) (KNAW)

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Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

LE/Stm (KyushuU)

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Sequenced By:	Kyushu University (Dr. Mikita Suyama) Kyoto University (Dr. Takashi Kuramoto)
Platform:	Illumina NextSeq 500
Secondary Analysis:	BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:	NBRP-Rat/Kyoto University
Description:	Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:	Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.

LE/Stm (SOLiD) (KNAW)

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Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

LEC/Tj (KyushuU)

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Sequenced By:	Kyushu University (Dr. Mikita Suyama) Kyoto University (Dr. Takashi Kuramoto)
Platform:	Illumina NextSeq 500
Secondary Analysis:	BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:	NBRP-Rat/Kyoto University
Description:	Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:	Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.

LEW/Crl (KNAW)

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Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

LEW/NCrl (KNAW)

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Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

LH/MavRrrc (KNAW)

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Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

LL/MavRrrc (KNAW)

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Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

LN/MavRrrc (KNAW)

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Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

M520/N (KNAW)

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Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

MHS/Gib (KNAW)

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Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

MNS/Gib (KNAW)

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Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

MR/N (KNAW)

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Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

NIG-III/Hok (KyushuU)

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Sequenced By:	Kyushu University (Dr. Mikita Suyama) Kyoto University (Dr. Takashi Kuramoto)
Platform:	Illumina NextSeq 500
Secondary Analysis:	BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:	NBRP-Rat/Kyoto University
Description:	Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:	Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.

RCS/Kyo (KyushuU)

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Sequenced By:	Kyushu University (Dr. Mikita Suyama) Kyoto University (Dr. Takashi Kuramoto)
Platform:	Illumina NextSeq 500
Secondary Analysis:	BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:	NBRP-Rat/Kyoto University
Description:	Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:	Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.

SBH/Ygl (KNAW)

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Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA-0.5.8c, GATK-v1.0.6001, samtools, Picard
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBN/Ygl (KNAW)

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Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA-0.5.8c, GATK-v1.0.6001, samtools, Picard
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SDLEF7/Barth (UDEL)

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Secondary Analysis:	GATK (HaplotypeCaller v.3.1-1, VariantAnnotator v.3.1-1, SnpEff v.3.6)
Description:	Provided by Barthold at al

SHR/NCrlPrin (KNAW)

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Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

SHR/NHsd (KNAW)

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Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

SHR/OlaIpcv (KNAW)

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Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

SHR/OlaIpcvPrin (KNAW)

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Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

SHRSP/Gcrc (KNAW)

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Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

SR/JrHsd (KNAW)

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Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v1.3-14
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/Jr (KNAW)

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Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

SS/JrHsdMcwi (KNAW)

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Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v1.3-14
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

WAG/Rij (KNAW)

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Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

WKY/Gcrc (KNAW)

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Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

WKY/N (KNAW)

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Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

WKY/NCrl (KNAW)

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Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

WKY/NHsd (KNAW)

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Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

WN/N (KNAW)

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Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

ZF (KyushuU)

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Sequenced By:	Kyushu University (Dr. Mikita Suyama) Kyoto University (Dr. Takashi Kuramoto)
Platform:	Illumina NextSeq 500
Secondary Analysis:	BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:	NBRP-Rat/Kyoto University
Description:	Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:	Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.

ZFDM (KyushuU)

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Sequenced By:	Kyushu University (Dr. Mikita Suyama) Kyoto University (Dr. Takashi Kuramoto)
Platform:	Illumina NextSeq 500
Secondary Analysis:	BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:	NBRP-Rat/Kyoto University
Description:	Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:	Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307520	AgrOrtholog
Ensembl Genes	ENSRNOG00000043419	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000060972	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000066190	ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH	1.10.20.10	UniProtKB/TrEMBL
InterPro	Histone-fold	UniProtKB/TrEMBL
	Histone_core_D	UniProtKB/TrEMBL
	Histone_H2B	UniProtKB/TrEMBL
KEGG Report	rno:303175	UniProtKB/TrEMBL
NCBI Gene	303175	ENTREZGENE
PANTHER	Histone_H2B	UniProtKB/TrEMBL
Pfam	Histone	UniProtKB/TrEMBL
PhenoGen	Hist3h2ba	PhenoGen
PRINTS	HISTONEH2B	UniProtKB/TrEMBL
PROSITE	HISTONE_H2B	UniProtKB/TrEMBL
SMART	H2B	UniProtKB/TrEMBL
Superfamily-SCOP	Histone-fold	UniProtKB/TrEMBL
UniGene	Rn.39174	ENTREZGENE
UniProt	D3ZNZ9	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Hist3h2ba	histone cluster 3, H2ba	Hist3h2ba_predicted	histone cluster 3, H2ba (predicted)	'predicted' is removed	2292626	APPROVED
2006-11-07	Hist3h2ba_predicted	histone cluster 3, H2ba (predicted)		histone 3, H2ba (predicted)	Name updated	1299863	APPROVED
2005-01-12	Hist3h2ba_predicted	histone 3, H2ba (predicted)			Symbol and Name status set to approved	70820	APPROVED

More on Hist3h2ba
	Alliance Gene
	NCBI Gene
	Ensembl Gene
	JBrowse: rn5 rn6
	NCBI Genome Data Viewer

RGD Object Information
RGD ID:	1307520
Created:	2005-01-12
Species:	Rattus norvegicus
Last Modified:	2019-06-11
Status:	ACTIVE

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.