Rps10-ps20 (ribosomal protein S10, pseudogene 20) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Rps10-ps20 (ribosomal protein S10, pseudogene 20) Rattus norvegicus
Analyze
Symbol: Rps10-ps20
Name: ribosomal protein S10, pseudogene 20
RGD ID: 1564698
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 40S ribosomal protein S10-like; LOC497882; RGD1564698; ribosomal protein S10 like 2; ribosomal protein S10 like 5; Rps10l2; Rps10l5; similar to ribosomal protein S10; small ribosomal subunit protein eS10-like
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81019,861,866 - 19,864,667 (-)NCBIGRCr8
mRatBN7.21019,357,743 - 19,360,370 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.01019,715,262 - 19,715,845 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01019,591,859 - 19,592,442 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41019,773,493 - 19,780,486 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1018,988,025 - 18,988,608 (-)NCBICelera
Cytogenetic Map10q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Rps10-ps20
22 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1
Count of miRNA genes:1
Interacting mature miRNAs:1
Transcripts:ENSRNOT00000040278
Prediction methods:Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634329Pia15Pristane induced arthritis QTL 153.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10124158324Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135225947Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138328221Rat
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142315980Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
1576304Schws7Schwannoma susceptibility QTL 70.0115nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)10476552719816042Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10538701450387014Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10538701450387014Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10538701450387014Rat
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)10580199062146030Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10637574651375746Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
9590310Scort19Serum corticosterone level QTL 196.30.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
9590268Scort13Serum corticosterone level QTL 133.260.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
9589136Insul27Insulin level QTL 2710.460.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)101147401056474010Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101448701189062041Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
1354587Kidm21Kidney mass QTL 213.3kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)101502851360430477Rat
631564Apr3Acute phase response QTL 33.9blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)101527595560275955Rat
6893350Bw99Body weight QTL 990.870.16body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
6893352Bw100Body weight QTL 1000.330.6body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
737823Alc12Alcohol consumption QTL 124.5consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)101724551319388279Rat
631532Cm50Cardiac mass QTL 506.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)101790711351786432Rat
1598852Anxrr19Anxiety related response QTL 195.07body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)101816784163167841Rat

Markers in Region
D10Rat46  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21019,388,102 - 19,388,279 (+)MAPPERmRatBN7.2
Rnor_6.01019,743,690 - 19,743,866NCBIRnor6.0
Rnor_5.01019,620,617 - 19,620,793UniSTSRnor5.0
RGSC_v3.41019,815,027 - 19,815,204RGDRGSC3.4
RGSC_v3.41019,815,028 - 19,815,204UniSTSRGSC3.4
RGSC_v3.11019,816,076 - 19,816,253RGD
Celera1019,017,983 - 19,018,182UniSTS
RH 2.0 Map10214.9RGD
SHRSP x BN Map1020.45RGD
Cytogenetic Map10q12UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_039087145   ⟹   XP_038943073
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81019,861,866 - 19,864,667 (-)NCBI
mRatBN7.21019,357,743 - 19,360,370 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038943073 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000041943.4
Reference Protein Sequences
RefSeq Acc Id: XP_038943073   ⟸   XM_039087145
- UniProtKB: D3ZJY5 (UniProtKB/TrEMBL)
Protein Domains
Plectin/eS10 N-terminal

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-25578 BioCyc
Ensembl Genes ENSRNOG00000049099 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000047113.4 UniProtKB/TrEMBL
Gene3D-CATH Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain UniProtKB/TrEMBL
InterPro Rps10 UniProtKB/TrEMBL
  S10_plectin_N UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
NCBI Gene 497882 ENTREZGENE
PANTHER 40S RIBOSOMAL PROTEIN S10 UniProtKB/TrEMBL
  RIBOSOMAL PROTEIN S10-LIKE UniProtKB/TrEMBL
Pfam S10_plectin UniProtKB/TrEMBL
PhenoGen Rps10-ps20 PhenoGen
RatGTEx ENSRNOG00000049099 RatGTEx
UniProt D3ZJY5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-11-27 Rps10-ps20  ribosomal protein S10, pseudogene 20  Rps10-ps20  ribosomal protein S10, pseudogene 20  Type changed (type changed from [protein-coding] to [pseudo]) 629549 APPROVED
2023-11-27 Rps10-ps20  ribosomal protein S10, pseudogene 20  Rps10l5  ribosomal protein S10 like 5  Name and Symbol changed 629549 APPROVED
2023-10-19 Rps10l5  ribosomal protein S10 like 5  Rps10l2  ribosomal protein S10 like 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2023-09-19 Rps10l2  ribosomal protein S10 like 2  RGD1564698  similar to ribosomal protein S10  Symbol and Name Changed 1299863 APPROVED
2008-04-30 RGD1564698  similar to ribosomal protein S10   RGD1564698_predicted  similar to ribosomal protein S10 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1564698_predicted  similar to ribosomal protein S10 (predicted)  LOC497882  similar to ribosomal protein S10  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC497882  similar to ribosomal protein S10      Symbol and Name status set to provisional 70820 PROVISIONAL