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Gene: Trim17 (tripartite motif-containing 17) Rattus norvegicus
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Symbol: Trim17
Name: tripartite motif-containing 17
RGD ID: 69290
Description: Predicted to have protein-macromolecule adaptor activity and ubiquitin protein ligase activity. Predicted to be involved in several processes, including autophagy; innate immune response; and protein autoubiquitination. Predicted to localize to cytoplasm. Orthologous to human TRIM17 (tripartite motif containing 17); INTERACTS WITH 2,2',5,5'-tetrachlorobiphenyl; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: E3 ubiquitin-protein ligase TRIM17; ring finger protein 16; RING finger protein terf; RING-type E3 ubiquitin transferase TRIM17; Rnf16; testis RING finger protein; tripartite motif protein 17; tripartite motif-containing protein 17
Orthologs:
Homo sapiens (human) : TRIM17 (tripartite motif containing 17)  HGNC  Alliance
Mus musculus (house mouse) : Trim17 (tripartite motif-containing 17)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Trim17 (tripartite motif containing 17)
Pan paniscus (bonobo/pygmy chimpanzee) : TRIM17 (tripartite motif containing 17)
Canis lupus familiaris (dog) : TRIM17 (tripartite motif containing 17)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Trim17 (tripartite motif containing 17)
Sus scrofa (pig) : TRIM17 (tripartite motif containing 17)
Chlorocebus sabaeus (African green monkey) : TRIM17 (tripartite motif containing 17)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01045,307,007 - 45,314,823 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1045,297,937 - 45,314,837 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01045,059,659 - 45,071,507 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41045,255,305 - 45,263,207 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11045,268,911 - 45,276,911 (+)NCBI
Celera1043,009,464 - 43,017,279 (+)NCBICelera
Cytogenetic Map10q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Trim17
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 69290
Created: 2001-11-14
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.