Baiap3 (BAI1-associated protein 3)

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Gene: Baiap3 (BAI1-associated protein 3) Rattus norvegicus

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Symbol:

Baiap3

Name:

BAI1-associated protein 3

RGD ID:

10059729

Description:

Predicted to enable calcium ion binding activity; phospholipid binding activity; and syntaxin binding activity. Predicted to be involved in several processes, including dense core granule maturation; regulation of GABAergic synaptic transmission; and regulation of secretion by cell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in cytosol. Predicted to be active in several cellular components, including GABA-ergic synapse; cytoplasmic vesicle; and trans-Golgi network membrane. Orthologous to human BAIAP3 (BAI1 associated protein 3); INTERACTS WITH 17beta-estradiol; 4,4'-sulfonyldiphenol; amphetamine.

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	BAIAP3 (BAI1 associated protein 3)	HGNC	EggNOG, Ensembl, NCBI, OMA, OrthoDB, OrthoMCL, Treefam
Mus musculus (house mouse):	Gm937 (gene model 937, (NCBI))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Baiap3 (BAI1 associated protein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	BAIAP3 (BAI1 associated protein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	BAIAP3 (BAI1 associated protein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Baiap3 (BAI1 associated protein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	BAIAP3 (BAI1 associated protein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	BAIAP3 (BAI1 associated protein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Baiap3 (BAI1 associated protein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	HAVCR1 (hepatitis A virus cellular receptor 1)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	BAIAP3 (BAI1 associated protein 3)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Gm937 (gene model 937, (NCBI))	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	baiap3 (BAI1-associated protein 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	F54G2.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	unc-13-4A	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	baiap3	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	14,764,768 - 14,777,516 (-)	NCBI		GRCr8
mRatBN7.2	10	14,260,269 - 14,273,019 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	14,260,269 - 14,273,019 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	19,001,012 - 19,013,814 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	18,489,874 - 18,502,678 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	13,989,089 - 14,001,887 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	14,601,133 - 14,613,881 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	14,599,197 - 14,613,878 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Celera	10	13,932,693 - 13,945,435 (-)	NCBI		Celera
Cytogenetic Map	10	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

epilepsy (ISO)

idiopathic generalized epilepsy (ISO)

long QT syndrome (ISO)

short-rib thoracic dysplasia 9 with or without polydactyly (ISO)

tuberous sclerosis 2 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

17beta-estradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

4,4'-sulfonyldiphenol (EXP)

4-hydroxyphenyl retinamide (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

amphetamine (EXP)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP)

butanal (ISO)

cadmium dichloride (ISO)

carmustine (ISO)

cisplatin (ISO)

DDE (ISO)

diazinon (ISO)

Dibutyl phosphate (ISO)

ethanol (ISO)

genistein (ISO)

lead(0) (ISO)

Licochalcone B (ISO)

methamphetamine (ISO)

ozone (ISO)

pentanal (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorononanoic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

propanal (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

thioacetamide (EXP)

trichloroethene (EXP)

trichostatin A (ISO)

triphenyl phosphate (ISO)

Triptolide (ISO)

triptonide (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

dense core granule maturation (ISO)

exocytosis (IEA)

G protein-coupled receptor signaling pathway (ISO)

modulation of chemical synaptic transmission (ISO)

positive regulation of insulin secretion involved in cellular response to glucose stimulus (ISO)

positive regulation of neurotransmitter secretion (IBA,ISO)

regulation of behavior (ISO)

regulation of dense core granule exocytosis (IBA,ISO)

regulation of synaptic transmission, GABAergic (ISO)

retrograde transport, endosome to Golgi (ISO)

Cellular Component

cytosol (ISO)

dense core granule (ISO)

early endosome membrane (ISO)

GABA-ergic synapse (ISO)

late endosome membrane (IBA,ISO)

plasma membrane (IBA,ISO)

presynapse (IEA)

recycling endosome membrane (IBA,ISO)

secretory vesicle (IBA)

trans-Golgi network membrane (IBA,ISO)

Molecular Function

calcium ion binding (ISO)

phospholipid binding (ISO)

protein binding (ISO)

SNARE binding (IBA,ISO)

syntaxin binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:9790924	PMID:12498718	PMID:23698091	PMID:28626000

Genomics

Comparative Map Data

Baiap3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	14,764,768 - 14,777,516 (-)	NCBI		GRCr8
mRatBN7.2	10	14,260,269 - 14,273,019 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	14,260,269 - 14,273,019 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	19,001,012 - 19,013,814 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	18,489,874 - 18,502,678 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	13,989,089 - 14,001,887 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	14,601,133 - 14,613,881 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	14,599,197 - 14,613,878 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Celera	10	13,932,693 - 13,945,435 (-)	NCBI		Celera
Cytogenetic Map	10	q12	NCBI

BAIAP3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	1,333,645 - 1,349,439 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	1,333,638 - 1,349,439 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	1,383,646 - 1,399,440 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	1,324,664 - 1,339,443 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	16	1,324,663 - 1,339,443	NCBI
Celera	16	1,598,966 - 1,613,557 (+)	NCBI		Celera
Cytogenetic Map	16	p13.3	NCBI
HuRef	16	1,311,766 - 1,327,840 (+)	NCBI		HuRef
CHM1_1	16	1,383,551 - 1,399,383 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	16	1,349,821 - 1,365,616 (+)	NCBI		T2T-CHM13v2.0

Gm937
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	25,461,633 - 25,475,255 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	25,461,633 - 25,475,338 (-)	Ensembl		GRCm39 Ensembl
GRCm38	17	25,242,659 - 25,256,364 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	25,242,659 - 25,256,364 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	25,379,604 - 25,393,309 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
Celera	17	22,580,768 - 22,581,139 (-)	NCBI		Celera
Celera	17	25,770,653 - 25,783,532 (-)	NCBI		Celera
Cytogenetic Map	17	A3.3	NCBI
cM Map	17	12.53	NCBI

Baiap3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955442	15,884,034 - 15,898,396 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955442	15,884,034 - 15,897,894 (-)	NCBI	ChiLan1.0	ChiLan1.0

BAIAP3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	1,596,824 - 1,612,527 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	5,384,005 - 5,399,773 (+)	NCBI		NHGRI_mPanPan1
PanPan1.1	16	1,389,145 - 1,404,929 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	1,390,160 - 1,403,978 (+)	Ensembl	panpan1.1		panPan2

BAIAP3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	39,421,019 - 39,434,539 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	39,427,520 - 39,435,596 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	40,688,840 - 40,703,473 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	39,767,134 - 39,781,842 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	6	39,443,862 - 39,458,489 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	39,416,505 - 39,431,131 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	39,894,814 - 39,909,449 (-)	NCBI		UU_Cfam_GSD_1.0

Baiap3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	104,152,671 - 104,166,942 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936694	2,543,195 - 2,556,540 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936694	2,542,521 - 2,556,540 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

BAIAP3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	40,537,399 - 40,550,471 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	40,536,557 - 40,550,508 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	41,973,049 - 41,986,996 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

BAIAP3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	1,222,994 - 1,237,823 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	1,227,910 - 1,236,898 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666068	29,845,977 - 29,861,169 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Baiap3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624913	2,045,721 - 2,060,092 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624913	2,045,702 - 2,060,092 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Baiap3
56 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	173
Count of miRNA genes:	95
Interacting mature miRNAs:	102
Transcripts:	ENSRNOT00000024072, ENSRNOT00000073112
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
9589136	Insul27	Insulin level QTL 27	10.46	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	10	11474010	56474010	Rat
2313095	Bss62	Bone structure and strength QTL 62	1.5	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	5387014	50387014	Rat
631660	Hcar1	Hepatocarcinoma resistance QTL 1	3.4	0.0001	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	10	6154182	15990232	Rat
1576304	Schws7	Schwannoma susceptibility QTL 7		0.0115	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	10	4765527	19816042	Rat
8662860	Vetf10	Vascular elastic tissue fragility QTL 10			artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	10	6154182	73453136	Rat
2313066	Bss63	Bone structure and strength QTL 63	1.4	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	10	5387014	50387014	Rat
7411611	Foco17	Food consumption QTL 17	18.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	10	1	42315980	Rat
631554	Bp133	Blood pressure QTL 133		0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	743364	63851208	Rat
2313064	Bmd71	Bone mineral density QTL 71	0.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	10	5387014	50387014	Rat
2303118	Mamtr7	Mammary tumor resistance QTL 7		0.003	mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	10	9658275	104670812	Rat
70223	Bp57	Blood pressure QTL 57	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	1	80676123	Rat
9590268	Scort13	Serum corticosterone level QTL 13	3.26	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	11474010	56474010	Rat
634329	Pia15	Pristane induced arthritis QTL 15	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	1	24158324	Rat
1578761	Stresp21	Stress response QTL 21	3.3		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	6375746	51375746	Rat
2293680	Bss40	Bone structure and strength QTL 40	5.66	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	10	1	35225947	Rat
2313104	Bss61	Bone structure and strength QTL 61	0.9	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	10	5387014	50387014	Rat
2298544	Neuinf9	Neuroinflammation QTL 9	4.6		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	10	5801990	62146030	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6357896	96121100	Rat
9590310	Scort19	Serum corticosterone level QTL 19	6.3	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	11474010	56474010	Rat
10401803	Kidm50	Kidney mass QTL 50			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	10	418344	45418344	Rat
737820	Alc9	Alcohol consumption QTL 9	2.2		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	10	5144027	19233348	Rat
2313081	Bss64	Bone structure and strength QTL 64	1.3	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	10	5387014	50387014	Rat
631828	Alc5	Alcohol consumption QTL 5	2.4		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	10	5144027	17245662	Rat
634327	Hc4	Hypercalciuria QTL 4	2.4		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	10	1	38328221	Rat

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium			29		27				89		24
Low	18	72	150	99	42	99			128	111	121	57
Below cutoff	3	69	48	48		48	26	45	33				24

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001312663	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC094421	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000024072 ⟹ ENSRNOP00000024072

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	14,260,269 - 14,273,019 (-)	Ensembl
Rnor_6.0 Ensembl	10	14,599,197 - 14,613,878 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000096043 ⟹ ENSRNOP00000077959

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	14,260,269 - 14,273,019 (-)	Ensembl

RefSeq Acc Id:

NM_001312663 ⟹ NP_001299592

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	14,764,768 - 14,777,516 (-)	NCBI
mRatBN7.2	10	14,260,269 - 14,273,019 (-)	NCBI
Rnor_6.0	10	14,601,133 - 14,613,881 (-)	NCBI
Celera	10	13,932,693 - 13,945,435 (-)	NCBI

Sequence:

show sequence

GCTGCTAGCGGTCGCTGTGCCTCGGTGTCCCCAGCTAGTGAGACCGCGACGCCAGCAGGGATCC
CCCCGACCCTGTGGCCCCAGAAGCCCTGTCCACGGTGGCTGCCATGTCAACCTTGCTGGACATC
AAGAGCAGTGTGCTCAGGCAGGTGCAGGTGTGCCCGTCCTTCCGCCGAAAGACAGAGCAGGAAC
CTGAGATCACAAACTCACAGGAGCCCCCCACGGGGGCCTGGAAACCTGGGGATGGTGTGGAGTT
CTTTGCCCACATGCGCCTCATCCTGAAAAAGGGGGACGGCAGACAGGGCCTGCCATGTCCCGAG
GTTCTTCTGCGAAGTGGTTCCCCAGCCCCTGCTGAGCCTGTGGACCCCAATCGTGGCCTGAGAG
CCCTGACCCAGGAGGAGGTGGAGATGCTCTACGAGGAAGCCTTATACACAGTCCTCCACCGGGC
TGGCACTATGGGCCCCGACCAGGTAGACGACGAGGAGGTCTTGCTAAGCTACCTTCAGCAGGTG
TTTGGCTCCAGTTCTGAGGAACACATGGAGGCCATCATGCGTGTGAAGAAGGCCAAGGCCCCCA
CCTATGCCCTGAAAGTCTCTGTCATGCGCGCCAAGAACCTTCTGGCTAAAGACCCCAATGGCTT
CAGTGACCCGTACTGCATGCTGGGTATCCTGCCGGCCTCAAGTGCCCCACAGGAGTCAAGTGGG
CAGAAGGAACAGCGCTTTGGCTTCCGAAAGGGCAGCAAGCGTAGCAGCCCGCTGCCTGCCAAGT
GTATCCAGGTCACCGAGGTCAAAAGCAGCACGCTGAATCCTGTCTGGAAGGAGCACTTCCTGCT
TGAAATTGAAGATGTCAATACAGACCAGCTGCACCTGGACATCTGGGACCACGATGATGACGTT
TCCCTGGCGGAAGCATGCAGGAAGCTGAATGAAGTTATTGGCCTGAAGGGAATGACCAGATACT
TCAAACAGATTGTCAAGTCGGCCCGTGCAAATGGGACAGCAGGACCCACTGAGGACCACACTGA
TGACTTCCTGGGGTGTCTCAACATCCCTATCCGGGAGGTGCCTGTGGCAGGTGCTGACCGCTGG
TTTAAGCTGGAACCACGCTCCAGTGCCTCCCGTGTGCAGGGGGACTGCCACCTGGTCCTGAAGC
TGATCACCACCCAGAGGGACACTGCTATGAGTCAGCGCGGACGTTCGGGCTTCCTGTCCTACCT
GTTGCTTCTCAGCCGTGTGCTGCGGTTTGAACACCGAGTGGAGGAGCCCAATTCCAGCAGTTGG
CGTGGCGAGCTTAGCGGGCCTGGGAACACAGTCCTTTGTCTGCATGGAGCCCAAAGCAATCTGT
CCCCCTTGCAGCTGGCTGTGCTGCACTGGCAAGTCAGTAGCCGTCATCATCAGACACGCACCCT
GGACTATGGGTACCTGCTGGGTCTGCTGGAAGATGTGCAGGCACACTGGGAGGAGGCAGCTTCA
CTGCCTCAGGAGCAGGAGGAGAGCCTGGCTGACAGCTTTTCTGCCTTCTCCGAGTTCGGGCTGA
GACTGCTGCGCCAGCTCCGGGATTACTTCCCCGCCACCAACAGCACGGCTGTGTATCGCTTGGA
GCTGCTGCTGAAGTGCCTGGAGAAGCTACAGCTTTTCCAACCAGCCTTTGAGATCTGCCCCTTT
GAGACCGAGCTCAGTATGGACATTGCGGCTGCCCTGAAGCGGGGCAACCGGGAGTGGTACGACC
AGCTCCTGAACGCCAAGAGTCCCCGAGAGCAGCCCGGGCCGCAGCGCCTAGCGGGGCTTGTTGA
GCTTGCAGACATCATCTACGAGGACTTGCAGTCCTGCTACGGGGTCTACGCCAGCCTCTTCCAC
GGTATCCTTAAGGTGGACTTCTTCACCCTTACCTTCCGGCAGCTGGAACGTCTGGTGGCCGAGG
AGGCATGGGTGCTGACAGAAGAGCTGAGCCCCAAGATGAACTTAGAGGTGGCCTCAGGGCTCTT
CGAGCTCTACCTGACCCTGGCAGACACCCAGCGTTTCTGGAGCTGCATCCCTGGACGGGAAAGC
CGCTCCCTAGCCCTGGCTGGCATCCACACCCCATTTCTGCCAGCCGTGAAACTCTGGCTGCAGG
TGCTGCGGGACCAGGCCAAGTGGCGCCTTCAGGGAGCCGTGGACGTAGACACGCTGGAGCCTGT
GGACGCGGCTTCCAAACACAGCAGCTCTGCAGCCACCGCCAGTCTCTGCCTTAGTCACATCCAG
GAGCTCTGGGTCCGCCTGGCTTGGCCCGACCCGGCCCAGGCCCAGGGGCTAGGCACTCAGCTCA
GCCAGGACATGTGCGAGGCCTCCCTCTTCTACACGGAGCTGCTGAGGAAGAAGGTGGACACCCA
GCCAGGGGCTGCTGGAGAGGCAGTGAGCGAGCAGCTCTGCGTGGTGCTCAACAACGTGGAGTTG
GTGCGCAGAGCTTCGGGGCAGGCACTAAGAGGACTGGCGTGGTCCGAAGGGGCCAATGGGCTGG
AGGGAGTGCTCCCCCGTCCTCTGCTCAGCAGCATACAGGCCCTGGATGAAGACCTTCTGCGGGA
GGCCCACACTGTGACAGCACACCTGACTTCCAAGATGGTGGCAGACATCCGGAAGTACGTACAG
CACATCAGTCTGTCTCCGGACTCCATTCAGAATGATGAGGCTGTAGCCCCACTCCTGAAGTACC
TAGATGAGAAGCTGGCCTTGCTGAACGACTCGCTGGTGAAGGAAAACCTGAGCAGGGTCCTAGA
AGCCCTCTGGGAGCTGCTTCTACAGGCCATTCTGCAGGCGCTGAGTGCAAACAGGGGTGTCTCT
GCCGATTTCTATGGACGCTTCCACTTCACACTGGAGGCTCTCGTCAGTTTCTTCCATGCTGAGG
GCCAGGGGCTGCCCCTGGAGAACCTGAGGGATGGAAGCTACAAGAGGCTGGAGGAGGAGCTGCG
GCTACACAAATGCTCCACCCGAGAGTGCATTGAGCAGTTCTACCTGGACAAGCTCAAGCAGAGG
TCCCTGGAGCAGAACCGGTTTGGCCGCCTGACCGTCCGGTGTCACTACGAAGCGGCTGAGCAGA
GGCTAGCTGTGGAGGTGCTGCACGCGGCGGACTTGCTGCCTCTGGACGCCAATGGCCTGAGTGA
CCCCTTTGTGATCGTGGAGCTTGGCCCACCACACCTCTTCCCACTGGTCCGCAGCCAGAGGACC
CAAGTCAAAGCTCGGACACTGCACCCGGTGTATGATGAGCTCTTCCACTTCTCCGTGCCTGCAG
AGGCGTGCCGTCGCCGCGGGGCCTGTGTGCTCTTCACCGTCATGGACCACGACTGGCTGTCCAC
CAATGACTTTGCAGGGGAAGCAGCCCTAGGCCTGGGTGGTGTCAGTGGCATCGCAAGGCCGCAT
GTGGGAGGGGGCGTGAGGCCCGGTCAGCCCATCACACTACATCTGCGCAGGCCCAGAGCTCAGG
TGAGGTCTGCACTGCGGATGCTAGAAGGCCGCACCAACCGAGAAGCACAGGAGTTCGTCAAGAA
ACTCAAGGAGCTGGAGAAGTGTATGGAGGCTGACCTCTGAGCATCCTGATGGTCGCAGTCCCGG
GCCTCGCCATTTCCCTGTGCAGCCCACTTTGTGCAGCAAGGGGTTCTGGAGGCCCCTCCCTCAC
CATGTGACCTGCCCACTCTGGTTGGACCCTGTGGCTTCTGTCTGCCCTGGCCGTGTCTTTTG

hide sequence

Protein Sequences


Protein RefSeqs	NP_001299592	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000024072.5
	ENSRNOP00000077959.1

RefSeq Acc Id:

NP_001299592 ⟸ NM_001312663

- UniProtKB:

F1LVS1 (UniProtKB/TrEMBL), A0A8I5Y6X2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSTLLDIKSSVLRQVQVCPSFRRKTEQEPEITNSQEPPTGAWKPGDGVEFFAHMRLILKKGDGR
QGLPCPEVLLRSGSPAPAEPVDPNRGLRALTQEEVEMLYEEALYTVLHRAGTMGPDQVDDEEVL
LSYLQQVFGSSSEEHMEAIMRVKKAKAPTYALKVSVMRAKNLLAKDPNGFSDPYCMLGILPASS
APQESSGQKEQRFGFRKGSKRSSPLPAKCIQVTEVKSSTLNPVWKEHFLLEIEDVNTDQLHLDI
WDHDDDVSLAEACRKLNEVIGLKGMTRYFKQIVKSARANGTAGPTEDHTDDFLGCLNIPIREVP
VAGADRWFKLEPRSSASRVQGDCHLVLKLITTQRDTAMSQRGRSGFLSYLLLLSRVLRFEHRVE
EPNSSSWRGELSGPGNTVLCLHGAQSNLSPLQLAVLHWQVSSRHHQTRTLDYGYLLGLLEDVQA
HWEEAASLPQEQEESLADSFSAFSEFGLRLLRQLRDYFPATNSTAVYRLELLLKCLEKLQLFQP
AFEICPFETELSMDIAAALKRGNREWYDQLLNAKSPREQPGPQRLAGLVELADIIYEDLQSCYG
VYASLFHGILKVDFFTLTFRQLERLVAEEAWVLTEELSPKMNLEVASGLFELYLTLADTQRFWS
CIPGRESRSLALAGIHTPFLPAVKLWLQVLRDQAKWRLQGAVDVDTLEPVDAASKHSSSAATAS
LCLSHIQELWVRLAWPDPAQAQGLGTQLSQDMCEASLFYTELLRKKVDTQPGAAGEAVSEQLCV
VLNNVELVRRASGQALRGLAWSEGANGLEGVLPRPLLSSIQALDEDLLREAHTVTAHLTSKMVA
DIRKYVQHISLSPDSIQNDEAVAPLLKYLDEKLALLNDSLVKENLSRVLEALWELLLQAILQAL
SANRGVSADFYGRFHFTLEALVSFFHAEGQGLPLENLRDGSYKRLEEELRLHKCSTRECIEQFY
LDKLKQRSLEQNRFGRLTVRCHYEAAEQRLAVEVLHAADLLPLDANGLSDPFVIVELGPPHLFP
LVRSQRTQVKARTLHPVYDELFHFSVPAEACRRRGACVLFTVMDHDWLSTNDFAGEAALGLGGV
SGIARPHVGGGVRPGQPITLHLRRPRAQVRSALRMLEGRTNREAQEFVKKLKELEKCMEADL

hide sequence

Ensembl Acc Id:

ENSRNOP00000024072 ⟸ ENSRNOT00000024072

Ensembl Acc Id:

ENSRNOP00000077959 ⟸ ENSRNOT00000096043

Protein Domains

C2 MHD1 MHD2

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1LVS1-F1-model_v2	AlphaFold	F1LVS1	1-1150	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13697057

Promoter ID:

EPDNEW_R7572

Type:

multiple initiation site

Name:

Baiap3_1

Description:

BAI1-associated protein 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	14,613,905 - 14,613,965	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:10059729	AgrOrtholog
BioCyc Gene	G2FUF-25795	BioCyc
Ensembl Genes	ENSRNOG00000017893	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000024072.9	UniProtKB/TrEMBL
	ENSRNOT00000096043.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.357.50	UniProtKB/TrEMBL
	2.60.40.150	UniProtKB/TrEMBL
InterPro	C2_dom	UniProtKB/TrEMBL
	C2_domain_sf	UniProtKB/TrEMBL
	MUN_dom	UniProtKB/TrEMBL
	Munc13_1	UniProtKB/TrEMBL
	Munc13_dom-2	UniProtKB/TrEMBL
	UNC-13_domain	UniProtKB/TrEMBL
KEGG Report	rno:106146145	UniProtKB/TrEMBL
NCBI Gene	Baiap3	ENTREZGENE
PANTHER	BAI1-ASSOCIATED PROTEIN 3	UniProtKB/TrEMBL
	UNC-13-4A, ISOFORM B	UniProtKB/TrEMBL
Pfam	MUN	UniProtKB/TrEMBL
	PF00168	UniProtKB/TrEMBL
PhenoGen	Baiap3	PhenoGen
PROSITE	MHD1	UniProtKB/TrEMBL
	MHD2	UniProtKB/TrEMBL
	PS50004	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000017893	RatGTEx
SMART	SM00239	UniProtKB/TrEMBL
Superfamily-SCOP	SSF49562	UniProtKB/TrEMBL
UniProt	A0A8I5Y6X2	ENTREZGENE, UniProtKB/TrEMBL
	F1LVS1	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-08-25	Baiap3	BAI1-associated protein 3			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar