Mpg (N-methylpurine-DNA glycosylase) - Rat Genome Database

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Gene: Mpg (N-methylpurine-DNA glycosylase) Rattus norvegicus
Analyze
Symbol: Mpg
Name: N-methylpurine-DNA glycosylase
RGD ID: 3106
Description: Predicted to enable alkylbase DNA N-glycosylase activity. Predicted to be involved in base-excision repair. Predicted to be located in cytosol and nucleoplasm. Orthologous to human MPG (N-methylpurine DNA glycosylase); PARTICIPATES IN base excision repair pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 3-alkyladenine DNA glycosylase; 3-methyladenine DNA glycosidase; ADPG; DNA-3-methyladenine glycosylase; N-methylpurine-DNA glycocylase
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81015,900,697 - 15,906,981 (-)NCBIGRCr8
mRatBN7.21015,396,246 - 15,402,528 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1015,395,782 - 15,402,520 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1020,142,264 - 20,148,499 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01019,631,151 - 19,637,386 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01015,124,059 - 15,130,284 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01015,661,768 - 15,667,995 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1015,661,608 - 15,668,022 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01015,556,911 - 15,563,138 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41015,643,334 - 15,649,561 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11015,644,406 - 15,650,564 (-)NCBI
Celera1015,063,825 - 15,070,052 (-)NCBICelera
RH 3.4 Map10149.16RGD
Cytogenetic Map10q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
1H-imidazo[2,1-i]purine  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
3-methyladenine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4-hydroperoxycyclophosphamide  (EXP)
acrylamide  (ISO)
ammonium chloride  (EXP)
apigenin  (EXP)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (ISO)
bezafibrate  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
bromoacetate  (ISO)
buta-1,3-diene  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
carmustine  (ISO)
chloroethene  (EXP)
cisplatin  (ISO)
copper(II) sulfate  (ISO)
cycloheximide  (ISO)
cyclophosphamide  (EXP)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP)
dimethyl sulfate  (ISO)
dioxygen  (ISO)
diuron  (EXP)
doxorubicin  (ISO)
endosulfan  (EXP)
ethyl methanesulfonate  (ISO)
fenbuconazole  (ISO)
fluoroethene  (EXP)
folic acid  (ISO)
FR900359  (ISO)
furan  (EXP)
hydroxyurea  (ISO)
imiquimod  (ISO)
ivermectin  (ISO)
methamphetamine  (EXP)
Methoxyamine  (ISO)
methyl methanesulfonate  (ISO)
N-methyl-N'-nitro-N-nitrosoguanidine  (ISO)
N-methyl-N-nitrosourea  (ISO)
O-methyleugenol  (EXP)
ochratoxin A  (EXP)
oxirane  (EXP)
p-menthan-3-ol  (ISO)
paracetamol  (EXP,ISO)
phenobarbital  (ISO)
resveratrol  (EXP)
SCH 23390  (EXP)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (ISO)
streptozocin  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
trichloroethene  (EXP)
triptonide  (ISO)
trovafloxacin  (ISO)
valproic acid  (ISO)
veliparib  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
base-excision repair  (IBA,IEA,ISO)

Cellular Component
cytosol  (IEA,ISO)
mitochondrial nucleoid  (IEA)
mitochondrion  (ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IEA)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. Isolation and structure of a cDNA expressing a mammalian 3-methyladenine-DNA glycosylase. O'Connor TR and Laval F, EMBO J 1990 Oct;9(10):3337-42.
7. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
8. Reactome: A Knowledgebase of Biological Processes Reactome
9. GOA pipeline RGD automated data pipeline
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
Additional References at PubMed
PMID:8435858   PMID:8889548   PMID:9371767   PMID:15177041  


Genomics

Comparative Map Data
Mpg
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81015,900,697 - 15,906,981 (-)NCBIGRCr8
mRatBN7.21015,396,246 - 15,402,528 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1015,395,782 - 15,402,520 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1020,142,264 - 20,148,499 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01019,631,151 - 19,637,386 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01015,124,059 - 15,130,284 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01015,661,768 - 15,667,995 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1015,661,608 - 15,668,022 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01015,556,911 - 15,563,138 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41015,643,334 - 15,649,561 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11015,644,406 - 15,650,564 (-)NCBI
Celera1015,063,825 - 15,070,052 (-)NCBICelera
RH 3.4 Map10149.16RGD
Cytogenetic Map10q12NCBI
MPG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381677,007 - 85,846 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1677,007 - 85,851 (+)EnsemblGRCh38hg38GRCh38
GRCh3716127,006 - 135,845 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361667,018 - 75,845 (+)NCBINCBI36Build 36hg18NCBI36
Build 341669,146 - 75,841NCBI
Celera16328,909 - 337,375 (+)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef1645,422 - 54,310 (+)NCBIHuRef
CHM1_116126,965 - 135,796 (+)NCBICHM1_1
T2T-CHM13v2.01670,552 - 79,447 (+)NCBIT2T-CHM13v2.0
Mpg
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391132,176,505 - 32,182,702 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1132,176,505 - 32,182,700 (+)EnsemblGRCm39 Ensembl
GRCm381132,226,505 - 32,232,702 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1132,226,505 - 32,232,700 (+)EnsemblGRCm38mm10GRCm38
MGSCv371132,126,505 - 32,132,702 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361132,126,511 - 32,132,700 (+)NCBIMGSCv36mm8
Celera1134,643,783 - 34,649,980 (+)NCBICelera
Cytogenetic Map11A4NCBI
cM Map1116.0NCBI
Mpg
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544217,068,395 - 17,075,588 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544217,068,327 - 17,077,569 (-)NCBIChiLan1.0ChiLan1.0
MPG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v218292,973 - 300,681 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1164,085,039 - 4,093,058 (+)NCBINHGRI_mPanPan1
PanPan1.11670,655 - 76,769 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1670,655 - 76,763 (+)Ensemblpanpan1.1panPan2
MPG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1640,390,053 - 40,396,893 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl640,390,124 - 40,393,810 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha641,653,072 - 41,659,827 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0640,733,084 - 40,739,839 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl640,733,152 - 40,737,836 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1640,420,649 - 40,427,404 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0640,381,576 - 40,388,332 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0640,860,752 - 40,867,507 (-)NCBIUU_Cfam_GSD_1.0
Mpg
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344112,685,548 - 112,693,280 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936501783,475 - 791,146 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936501783,408 - 791,109 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MPG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl341,540,656 - 41,548,290 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1341,540,650 - 41,548,339 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2340,889,908 - 40,897,593 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MPG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1535,073 - 42,290 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl535,114 - 43,581 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606831,182,322 - 31,189,552 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mpg
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624913959,134 - 967,436 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624913959,538 - 967,503 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Mpg
27 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:107
Count of miRNA genes:91
Interacting mature miRNAs:99
Transcripts:ENSRNOT00000027940
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9589136Insul27Insulin level QTL 2710.460.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)101147401056474010Rat
631564Apr3Acute phase response QTL 33.9blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)101527595560275955Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10538701450387014Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10538701450387014Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
1354587Kidm21Kidney mass QTL 213.3kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)101502851360430477Rat
634329Pia15Pristane induced arthritis QTL 153.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10124158324Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10637574651375746Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135225947Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)10580199062146030Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat
737820Alc9Alcohol consumption QTL 92.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10514402719233348Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10538701450387014Rat
631828Alc5Alcohol consumption QTL 52.4consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10514402717245662Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138328221Rat
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
631660Hcar1Hepatocarcinoma resistance QTL 13.40.0001liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)10615418215990232Rat
1576304Schws7Schwannoma susceptibility QTL 70.0115nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)10476552719816042Rat
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142315980Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101448701189062041Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
9590268Scort13Serum corticosterone level QTL 133.260.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
9590310Scort19Serum corticosterone level QTL 196.30.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat

Markers in Region
D10Wox34  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01015,668,315 - 15,668,518NCBIRnor6.0
Rnor_5.01015,563,458 - 15,563,661UniSTSRnor5.0
RGSC_v3.41015,649,881 - 15,650,084UniSTSRGSC3.4
Cytogenetic Map10q12UniSTS
RH94754  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21015,396,292 - 15,396,395 (+)MAPPERmRatBN7.2
Rnor_6.01015,661,815 - 15,661,917NCBIRnor6.0
Rnor_5.01015,556,958 - 15,557,060UniSTSRnor5.0
RGSC_v3.41015,643,381 - 15,643,483UniSTSRGSC3.4
Celera1015,063,872 - 15,063,974UniSTS
Cytogenetic Map10q12UniSTS
RH142202  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21015,402,670 - 15,402,839 (+)MAPPERmRatBN7.2
Rnor_6.01015,668,193 - 15,668,361NCBIRnor6.0
Rnor_5.01015,563,336 - 15,563,504UniSTSRnor5.0
RGSC_v3.41015,649,759 - 15,649,927UniSTSRGSC3.4
RH 3.4 Map10149.16UniSTS
Cytogenetic Map10q12UniSTS
BE097349  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21015,397,069 - 15,397,222 (+)MAPPERmRatBN7.2
Rnor_6.01015,662,592 - 15,662,744NCBIRnor6.0
Rnor_5.01015,557,735 - 15,557,887UniSTSRnor5.0
RGSC_v3.41015,644,158 - 15,644,310UniSTSRGSC3.4
Celera1015,064,649 - 15,064,801UniSTS
RH 3.4 Map10148.69UniSTS
Cytogenetic Map10q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000027940   ⟹   ENSRNOP00000027940
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1015,395,782 - 15,402,520 (-)Ensembl
Rnor_6.0 Ensembl1015,661,608 - 15,668,022 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000085746   ⟹   ENSRNOP00000073752
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1015,396,258 - 15,402,511 (-)Ensembl
Rnor_6.0 Ensembl1015,661,792 - 15,667,955 (-)Ensembl
RefSeq Acc Id: NM_012601   ⟹   NP_036733
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81015,900,697 - 15,906,924 (-)NCBI
mRatBN7.21015,396,246 - 15,402,473 (-)NCBI
Rnor_6.01015,661,768 - 15,667,995 (-)NCBI
Rnor_5.01015,556,911 - 15,563,138 (-)NCBI
RGSC_v3.41015,643,334 - 15,649,561 (-)RGD
Celera1015,063,825 - 15,070,052 (-)RGD
Sequence:
RefSeq Acc Id: XM_039085191   ⟹   XP_038941119
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81015,902,324 - 15,906,981 (-)NCBI
mRatBN7.21015,396,982 - 15,402,528 (-)NCBI
RefSeq Acc Id: NP_036733   ⟸   NM_012601
- UniProtKB: D3ZEM0 (UniProtKB/TrEMBL),   A6HDB1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000073752   ⟸   ENSRNOT00000085746
Ensembl Acc Id: ENSRNOP00000027940   ⟸   ENSRNOT00000027940
RefSeq Acc Id: XP_038941119   ⟸   XM_039085191
- Peptide Label: isoform X1

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13697078
Promoter ID:EPDNEW_R7603
Type:multiple initiation site
Name:Mpg_1
Description:N-methylpurine-DNA glycosylase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01015,668,031 - 15,668,091EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3106 AgrOrtholog
BioCyc Gene G2FUF-25698 BioCyc
Ensembl Genes ENSRNOG00000020571 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000027940.5 UniProtKB/TrEMBL
  ENSRNOT00000085746.2 UniProtKB/TrEMBL
Gene3D-CATH 3.10.300.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Formyl_transferase-like_C_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MPG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MPG_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:24561 UniProtKB/TrEMBL
NCBI Gene 24561 ENTREZGENE
PANTHER DNA-3-METHYLADENINE GLYCOSYLASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10429 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Pur_DNA_glyco UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB MPG RGD
PhenoGen Mpg PhenoGen
PROSITE PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000020571 RatGTEx
Superfamily-SCOP SSF50486 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGR TC219231
UniProt 3MG_RAT UniProtKB/Swiss-Prot
  A0A0G2K6B9_RAT UniProtKB/TrEMBL
  A6HDB1 ENTREZGENE, UniProtKB/TrEMBL
  A6HDB2 ENTREZGENE, UniProtKB/TrEMBL
  D3ZEM0 ENTREZGENE, UniProtKB/TrEMBL
  P23571 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Mpg  N-methylpurine-DNA glycocylase      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_protein 253 amino acid residues 728922