Ttc1 (tetratricopeptide repeat domain 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Ttc1 (tetratricopeptide repeat domain 1) Rattus norvegicus
Analyze
Symbol: Ttc1
Name: tetratricopeptide repeat domain 1
RGD ID: 1359604
Description: Predicted to be located in cytosol. Orthologous to human TTC1 (tetratricopeptide repeat domain 1); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: MGC95276; tetratricopeptide repeat protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81028,703,763 - 28,728,910 (-)NCBIGRCr8
mRatBN7.21028,202,325 - 28,227,464 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1028,202,325 - 28,227,472 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1032,961,807 - 32,986,888 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0101,500,181 - 1,525,262 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01027,932,350 - 27,957,431 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01029,342,495 - 29,367,865 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1029,342,495 - 29,367,865 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01029,182,723 - 29,208,144 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41028,836,004 - 28,860,967 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11028,837,052 - 28,862,016 (-)NCBI
Celera1027,691,761 - 27,716,918 (-)NCBICelera
Cytogenetic Map10q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (IEA,ISO)

Molecular Function
protein binding  (IPI,ISO)

References

References - curated
# Reference Title Reference Citation
1. A direct interaction between cytoplasmic dynein and kinesin I may coordinate motor activity. Ligon LA, etal., J Biol Chem. 2004 Apr 30;279(18):19201-8. Epub 2004 Feb 24.
2. Identification of tetratricopeptide repeat 1 as an adaptor protein that interacts with heterotrimeric G proteins and the small GTPase Ras. Marty C, etal., Mol Cell Biol 2003 Jun;23(11):3847-58.
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:21525035  


Genomics

Comparative Map Data
Ttc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81028,703,763 - 28,728,910 (-)NCBIGRCr8
mRatBN7.21028,202,325 - 28,227,464 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1028,202,325 - 28,227,472 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1032,961,807 - 32,986,888 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0101,500,181 - 1,525,262 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01027,932,350 - 27,957,431 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01029,342,495 - 29,367,865 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1029,342,495 - 29,367,865 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01029,182,723 - 29,208,144 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41028,836,004 - 28,860,967 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11028,837,052 - 28,862,016 (-)NCBI
Celera1027,691,761 - 27,716,918 (-)NCBICelera
Cytogenetic Map10q21NCBI
TTC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385160,009,139 - 160,065,543 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5160,009,113 - 160,065,543 (+)EnsemblGRCh38hg38GRCh38
GRCh375159,436,146 - 159,492,550 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365159,368,758 - 159,425,128 (+)NCBINCBI36Build 36hg18NCBI36
Build 345159,368,757 - 159,425,128NCBI
Celera5155,467,734 - 155,524,106 (+)NCBICelera
Cytogenetic Map5q33.3NCBI
HuRef5154,530,645 - 154,586,936 (+)NCBIHuRef
CHM1_15158,869,248 - 158,925,563 (+)NCBICHM1_1
T2T-CHM13v2.05160,537,708 - 160,594,091 (+)NCBIT2T-CHM13v2.0
Ttc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391143,620,833 - 43,638,835 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1143,620,339 - 43,638,835 (-)EnsemblGRCm39 Ensembl
GRCm381143,730,006 - 43,748,008 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1143,729,512 - 43,748,008 (-)EnsemblGRCm38mm10GRCm38
MGSCv371143,543,508 - 43,561,475 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361143,573,429 - 43,591,396 (-)NCBIMGSCv36mm8
Celera1148,356,243 - 48,374,211 (-)NCBICelera
Cytogenetic Map11B1.1NCBI
cM Map1125.81NCBI
Ttc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540813,966,821 - 14,007,238 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540813,966,957 - 14,007,238 (+)NCBIChiLan1.0ChiLan1.0
TTC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24155,194,236 - 155,250,926 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15153,333,784 - 153,390,474 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05155,399,781 - 155,456,454 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15162,015,981 - 162,072,884 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5162,015,845 - 162,072,884 (+)Ensemblpanpan1.1panPan2
TTC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1450,603,649 - 50,650,470 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl450,603,650 - 50,650,358 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha450,497,755 - 50,544,559 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0451,038,378 - 51,085,271 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl451,038,378 - 51,084,834 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1450,846,846 - 50,893,426 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0450,969,971 - 51,016,779 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0451,490,523 - 51,537,395 (-)NCBIUU_Cfam_GSD_1.0
Ttc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213104,993,600 - 105,042,248 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365153,442,950 - 3,491,596 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365153,442,946 - 3,491,566 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TTC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1663,455,734 - 63,523,354 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11663,458,350 - 63,515,517 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21668,949,772 - 69,028,497 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TTC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12362,375,085 - 62,431,062 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2362,375,150 - 62,430,583 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603415,177,065 - 15,233,405 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ttc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473329,452,765 - 29,502,588 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473329,443,789 - 29,502,702 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ttc1
47 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:293
Count of miRNA genes:182
Interacting mature miRNAs:214
Transcripts:ENSRNOT00000005304
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135225947Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138328221Rat
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142315980Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10538701450387014Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10538701450387014Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10538701450387014Rat
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)10580199062146030Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10637574651375746Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
9590310Scort19Serum corticosterone level QTL 196.30.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
9590268Scort13Serum corticosterone level QTL 133.260.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
9589136Insul27Insulin level QTL 2710.460.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)101147401056474010Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101448701189062041Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
1354587Kidm21Kidney mass QTL 213.3kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)101502851360430477Rat
631564Apr3Acute phase response QTL 33.9blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)101527595560275955Rat
6893350Bw99Body weight QTL 990.870.16body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
6893352Bw100Body weight QTL 1000.330.6body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
631532Cm50Cardiac mass QTL 506.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)101790711351786432Rat
1598852Anxrr19Anxiety related response QTL 195.07body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)101816784163167841Rat
2313055Bw96Body weight QTL 963.60.0001body mass (VT:0001259)body weight (CMO:0000012)101960648364606483Rat
2313087Bmd80Bone mineral density QTL 803.20.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)101960648364606483Rat
1554317Bmd4Bone mineral density QTL 49.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)101981604299406971Rat
1581497Esta1Estrogen-induced thymic atrophy QTL 1thymus mass (VT:0004954)thymus wet weight (CMO:0000855)102132980561345413Rat
724556Pur2Proteinuria QTL 25.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)102242750090627625Rat
631531Iresp2Immunoglobin response QTL26.3blood immunoglobulin E amount (VT:0002492)serum immunoglobulin E level (CMO:0002101)102291826836400810Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
70224Eae3Experimental allergic encephalomyelitis QTL 34.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)102652195761345413Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
631542Bp82Blood pressure QTL 826.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102652195798952741Rat
2300171Bmd58Bone mineral density QTL 584.90.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)102694462871944628Rat
10402859Bp381Blood pressure QTL 3810.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102760646872606468Rat
2292441Bp308Blood pressure QTL 308arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102760646872606468Rat
2298480Eau7Experimental allergic uveoretinitis QTL 70.0049uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)102795762634490668Rat

Markers in Region
BI294827  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21028,225,539 - 28,225,725 (+)MAPPERmRatBN7.2
Rnor_6.01029,365,706 - 29,365,891NCBIRnor6.0
Rnor_5.01029,205,934 - 29,206,119UniSTSRnor5.0
RGSC_v3.41028,859,077 - 28,859,262UniSTSRGSC3.4
Celera1027,714,973 - 27,715,158UniSTS
RH 3.4 Map10297.4UniSTS
Cytogenetic Map10q21UniSTS
RH132376  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21028,202,436 - 28,202,646 (+)MAPPERmRatBN7.2
Rnor_6.01029,342,607 - 29,342,816NCBIRnor6.0
Rnor_5.01029,182,835 - 29,183,044UniSTSRnor5.0
RGSC_v3.41028,836,116 - 28,836,325UniSTSRGSC3.4
Celera1027,691,873 - 27,692,082UniSTS
RH 3.4 Map10296.9UniSTS
Cytogenetic Map10q21UniSTS
RH139190  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21028,202,436 - 28,202,556 (+)MAPPERmRatBN7.2
Rnor_6.01029,342,607 - 29,342,726NCBIRnor6.0
Rnor_5.01029,182,835 - 29,182,954UniSTSRnor5.0
RGSC_v3.41028,836,116 - 28,836,235UniSTSRGSC3.4
Celera1027,691,873 - 27,691,992UniSTS
RH 3.4 Map10295.1UniSTS
Cytogenetic Map10q21UniSTS
AU048871  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21028,209,012 - 28,209,173 (+)MAPPERmRatBN7.2
mRatBN7.21028,209,012 - 28,209,335 (+)MAPPERmRatBN7.2
Rnor_6.01029,349,183 - 29,349,503NCBIRnor6.0
Rnor_6.01029,349,183 - 29,349,341NCBIRnor6.0
Rnor_5.01029,189,411 - 29,189,569UniSTSRnor5.0
Rnor_5.01029,189,411 - 29,189,731UniSTSRnor5.0
RGSC_v3.41028,842,692 - 28,842,874UniSTSRGSC3.4
Celera1027,698,450 - 27,698,770UniSTS
Celera1027,698,450 - 27,698,608UniSTS
Cytogenetic Map10q21UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000005304   ⟹   ENSRNOP00000005304
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1028,202,325 - 28,227,472 (-)Ensembl
Rnor_6.0 Ensembl1029,342,495 - 29,367,865 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000118530   ⟹   ENSRNOP00000090869
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1028,202,328 - 28,227,457 (-)Ensembl
RefSeq Acc Id: NM_001005529   ⟹   NP_001005529
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81028,703,763 - 28,728,865 (-)NCBI
mRatBN7.21028,202,325 - 28,227,431 (-)NCBI
Rnor_6.01029,342,495 - 29,367,865 (-)NCBI
Rnor_5.01029,182,723 - 29,208,144 (-)NCBI
RGSC_v3.41028,836,004 - 28,860,967 (-)RGD
Celera1027,691,761 - 27,716,918 (-)RGD
Sequence:
RefSeq Acc Id: XM_039085372   ⟹   XP_038941300
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81028,704,240 - 28,728,910 (-)NCBI
mRatBN7.21028,202,325 - 28,227,438 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001005529 (Get FASTA)   NCBI Sequence Viewer  
  XP_038941300 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH82093 (Get FASTA)   NCBI Sequence Viewer  
  EDM04141 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000005304
  ENSRNOP00000005304.3
  ENSRNOP00000090869.1
RefSeq Acc Id: NP_001005529   ⟸   NM_001005529
- UniProtKB: Q66H09 (UniProtKB/TrEMBL),   F7ER79 (UniProtKB/TrEMBL),   A0A8I6AEL9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000005304   ⟸   ENSRNOT00000005304
RefSeq Acc Id: XP_038941300   ⟸   XM_039085372
- Peptide Label: isoform X1
RefSeq Acc Id: ENSRNOP00000090869   ⟸   ENSRNOT00000118530

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q66H09-F1-model_v2 AlphaFold Q66H09 1-292 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13697118
Promoter ID:EPDNEW_R7642
Type:multiple initiation site
Name:Ttc1_1
Description:tetratricopeptide repeat domain 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01029,367,882 - 29,367,942EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359604 AgrOrtholog
BioCyc Gene G2FUF-25439 BioCyc
Ensembl Genes ENSRNOG00000003980 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000005304 ENTREZGENE
  ENSRNOT00000005304.6 UniProtKB/TrEMBL
  ENSRNOT00000118530.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7134129 IMAGE-MGC_LOAD
InterPro TPR-1 UniProtKB/TrEMBL
  TPR-like_helical UniProtKB/TrEMBL
  TPR_repeat UniProtKB/TrEMBL
KEGG Report rno:287208 UniProtKB/TrEMBL
MGC_CLONE MGC:95276 IMAGE-MGC_LOAD
NCBI Gene 287208 ENTREZGENE
PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 UniProtKB/TrEMBL
  TETRATRICOPEPTIDE REPEAT PROTEIN 1 UniProtKB/TrEMBL
Pfam TPR_1 UniProtKB/TrEMBL
  TPR_8 UniProtKB/TrEMBL
PhenoGen Ttc1 PhenoGen
PROSITE TPR UniProtKB/TrEMBL
RatGTEx ENSRNOG00000003980 RatGTEx
SMART TPR UniProtKB/TrEMBL
Superfamily-SCOP SSF48452 UniProtKB/TrEMBL
UniProt A0A8I6AEL9 ENTREZGENE, UniProtKB/TrEMBL
  F7ER79 ENTREZGENE, UniProtKB/TrEMBL
  Q66H09 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Ttc1  tetratricopeptide repeat domain 1      Symbol and Name status set to approved 1299863 APPROVED
2005-07-29 Ttc1  tetratricopeptide repeat domain 1      Symbol and Name status set to provisional 70820 PROVISIONAL