Ergic1 (endoplasmic reticulum-golgi intermediate compartment 1) - Rat Genome Database

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Gene: Ergic1 (endoplasmic reticulum-golgi intermediate compartment 1) Rattus norvegicus
Analyze
Symbol: Ergic1
Name: endoplasmic reticulum-golgi intermediate compartment 1
RGD ID: 1585015
Description: Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport and retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to be located in endoplasmic reticulum-Golgi intermediate compartment and nucleoplasm. Predicted to be active in COPII-coated ER to Golgi transport vesicle; endoplasmic reticulum; and membrane. Human ortholog(s) of this gene implicated in neurogenic-type arthrogryposis multiplex congenita-2. Orthologous to human ERGIC1 (endoplasmic reticulum-golgi intermediate compartment 1); INTERACTS WITH 4,4'-sulfonyldiphenol; 6-propyl-2-thiouracil; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1; endoplasmic reticulum-Golgi intermediate compartment protein 1; LOC287177; mKIAA1181 protein-like; similar to Endoplasmic reticulum-Golgi intermediate compartment protein 1 (ER-Golgi intermediate compartment 32 kDa protein) (ERGIC-32)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81017,035,615 - 17,131,411 (-)NCBIGRCr8
mRatBN7.21016,531,192 - 16,626,974 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1016,531,194 - 16,626,957 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1021,281,024 - 21,376,823 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01020,769,590 - 20,865,403 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01016,259,345 - 16,355,279 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01016,821,393 - 16,912,050 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1016,821,880 - 16,910,641 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01016,717,726 - 16,814,027 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41016,793,908 - 16,900,287 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1016,184,053 - 16,280,043 (-)NCBICelera
Cytogenetic Map10q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15308636   PMID:19946888  


Genomics

Comparative Map Data
Ergic1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81017,035,615 - 17,131,411 (-)NCBIGRCr8
mRatBN7.21016,531,192 - 16,626,974 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1016,531,194 - 16,626,957 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1021,281,024 - 21,376,823 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01020,769,590 - 20,865,403 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01016,259,345 - 16,355,279 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01016,821,393 - 16,912,050 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1016,821,880 - 16,910,641 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01016,717,726 - 16,814,027 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41016,793,908 - 16,900,287 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1016,184,053 - 16,280,043 (-)NCBICelera
Cytogenetic Map10q12NCBI
ERGIC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385172,834,251 - 172,952,683 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5172,834,251 - 172,952,792 (+)EnsemblGRCh38hg38GRCh38
GRCh375172,261,254 - 172,379,686 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365172,193,947 - 172,312,292 (+)NCBINCBI36Build 36hg18NCBI36
Celera5168,294,145 - 168,412,842 (+)NCBICelera
Cytogenetic Map5q35.1NCBI
HuRef5167,356,628 - 167,474,936 (+)NCBIHuRef
CHM1_15171,693,810 - 171,812,411 (+)NCBICHM1_1
T2T-CHM13v2.05173,374,397 - 173,492,729 (+)NCBIT2T-CHM13v2.0
Ergic1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391726,779,736 - 26,875,908 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1726,780,463 - 26,875,908 (+)EnsemblGRCm39 Ensembl
GRCm381726,560,762 - 26,656,934 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1726,561,489 - 26,656,934 (+)EnsemblGRCm38mm10GRCm38
MGSCv371726,698,457 - 26,793,879 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361726,289,112 - 26,384,534 (+)NCBIMGSCv36mm8
Celera1727,095,127 - 27,193,240 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1713.34NCBI
Ergic1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540825,540,013 - 25,645,503 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540825,540,149 - 25,644,108 (+)NCBIChiLan1.0ChiLan1.0
ERGIC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24167,973,259 - 168,091,228 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15166,112,803 - 166,230,770 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05168,187,760 - 168,305,675 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15175,098,246 - 175,215,920 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5175,098,246 - 175,215,920 (+)Ensemblpanpan1.1panPan2
ERGIC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1439,434,631 - 39,539,885 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl439,418,518 - 39,540,379 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha439,379,470 - 39,484,736 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0439,805,098 - 39,910,265 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl439,786,076 - 39,910,354 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1439,621,873 - 39,727,039 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0439,811,496 - 39,916,703 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0440,321,077 - 40,426,511 (-)NCBIUU_Cfam_GSD_1.0
Ergic1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721393,848,819 - 93,899,412 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366092,571,501 - 2,615,313 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366092,571,498 - 2,615,313 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ERGIC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1651,285,493 - 51,330,169 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11651,283,763 - 51,403,513 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21655,597,260 - 55,713,914 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ERGIC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12375,001,203 - 75,121,583 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2375,056,015 - 75,119,704 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660343,490,565 - 3,611,216 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ergic1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473317,092,746 - 17,196,607 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473317,092,848 - 17,196,602 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ergic1
663 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:91
Count of miRNA genes:76
Interacting mature miRNAs:79
Transcripts:ENSRNOT00000005273
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634329Pia15Pristane induced arthritis QTL 153.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10124158324Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135225947Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138328221Rat
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142315980Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
1576304Schws7Schwannoma susceptibility QTL 70.0115nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)10476552719816042Rat
631828Alc5Alcohol consumption QTL 52.4consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10514402717245662Rat
737820Alc9Alcohol consumption QTL 92.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10514402719233348Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10538701450387014Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10538701450387014Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10538701450387014Rat
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)10580199062146030Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10637574651375746Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
9590310Scort19Serum corticosterone level QTL 196.30.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
9590268Scort13Serum corticosterone level QTL 133.260.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
9589136Insul27Insulin level QTL 2710.460.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)101147401056474010Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101448701189062041Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
1354587Kidm21Kidney mass QTL 213.3kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)101502851360430477Rat
631564Apr3Acute phase response QTL 33.9blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)101527595560275955Rat
6893350Bw99Body weight QTL 990.870.16body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
6893352Bw100Body weight QTL 1000.330.6body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat

Markers in Region
BE111853  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21016,538,985 - 16,539,142 (+)MAPPERmRatBN7.2
Rnor_6.01016,829,187 - 16,829,343NCBIRnor6.0
Rnor_5.01016,725,520 - 16,725,676UniSTSRnor5.0
RGSC_v3.41016,801,704 - 16,801,860UniSTSRGSC3.4
Celera1016,191,841 - 16,191,997UniSTS
RH 3.4 Map10149.19UniSTS
Cytogenetic Map10q12UniSTS
RH143427  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21016,538,526 - 16,538,826 (+)MAPPERmRatBN7.2
Rnor_6.01016,828,728 - 16,829,027NCBIRnor6.0
Rnor_5.01016,725,061 - 16,725,360UniSTSRnor5.0
RGSC_v3.41016,801,245 - 16,801,544UniSTSRGSC3.4
Celera1016,191,382 - 16,191,681UniSTS
Cytogenetic Map10q12UniSTS
RH140778  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21016,531,645 - 16,531,880 (+)MAPPERmRatBN7.2
Rnor_6.01016,821,847 - 16,822,081NCBIRnor6.0
Rnor_6.01016,453,714 - 16,453,948NCBIRnor6.0
Rnor_5.01016,718,180 - 16,718,414UniSTSRnor5.0
Rnor_5.01016,344,939 - 16,345,173UniSTSRnor5.0
RGSC_v3.41016,794,364 - 16,794,598UniSTSRGSC3.4
Celera1016,184,507 - 16,184,741UniSTS
RH 3.4 Map10148.32UniSTS
Cytogenetic Map10q12UniSTS
AA800719  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21016,531,223 - 16,531,425 (+)MAPPERmRatBN7.2
Rnor_6.01016,821,425 - 16,821,626NCBIRnor6.0
Rnor_6.01016,453,292 - 16,453,493NCBIRnor6.0
Rnor_5.01016,717,758 - 16,717,959UniSTSRnor5.0
Rnor_5.01016,344,517 - 16,344,718UniSTSRnor5.0
RGSC_v3.41016,793,942 - 16,794,143UniSTSRGSC3.4
Celera1016,184,085 - 16,184,286UniSTS
RH 3.4 Map10146.21UniSTS
Cytogenetic Map10q12UniSTS
AU049717  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21016,623,452 - 16,623,610 (+)MAPPERmRatBN7.2
Rnor_6.01016,913,650 - 16,913,805NCBIRnor6.0
Rnor_5.01016,809,989 - 16,810,144UniSTSRnor5.0
RGSC_v3.41016,886,072 - 16,886,227UniSTSRGSC3.4
Celera1016,276,317 - 16,276,472UniSTS
Cytogenetic Map10q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 39 57 41 19 41 6 9 74 35 41 11 6
Low 4 2 2 2
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000005273   ⟹   ENSRNOP00000005273
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1016,531,198 - 16,626,937 (-)Ensembl
Rnor_6.0 Ensembl1016,821,880 - 16,910,641 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000101109   ⟹   ENSRNOP00000083119
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1016,531,194 - 16,626,906 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000103083   ⟹   ENSRNOP00000082417
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1016,542,858 - 16,626,901 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000103795   ⟹   ENSRNOP00000076518
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1016,533,871 - 16,626,957 (-)Ensembl
RefSeq Acc Id: NM_001398572   ⟹   NP_001385501
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81017,035,615 - 17,131,376 (-)NCBI
mRatBN7.21016,531,192 - 16,626,964 (-)NCBI
RefSeq Acc Id: XM_063268572   ⟹   XP_063124642
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81017,035,617 - 17,125,413 (-)NCBI
RefSeq Acc Id: XM_063268573   ⟹   XP_063124643
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81017,035,617 - 17,106,189 (-)NCBI
RefSeq Acc Id: XR_010055140
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81017,050,758 - 17,125,448 (-)NCBI
RefSeq Acc Id: XR_010055141
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81017,050,758 - 17,131,411 (-)NCBI
RefSeq Acc Id: ENSRNOP00000005273   ⟸   ENSRNOT00000005273
RefSeq Acc Id: ENSRNOP00000083119   ⟸   ENSRNOT00000101109
RefSeq Acc Id: ENSRNOP00000076518   ⟸   ENSRNOT00000103795
RefSeq Acc Id: ENSRNOP00000082417   ⟸   ENSRNOT00000103083
RefSeq Acc Id: NP_001385501   ⟸   NM_001398572
- UniProtKB: F1LU48 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063124642   ⟸   XM_063268572
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063124643   ⟸   XM_063268573
- Peptide Label: isoform X2
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LU48-F1-model_v2 AlphaFold F1LU48 1-313 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1585015 AgrOrtholog
BioCyc Gene G2FUF-25644 BioCyc
Ensembl Genes ENSRNOG00000003508 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000005273 ENTREZGENE
  ENSRNOT00000005273.8 UniProtKB/TrEMBL
  ENSRNOT00000101109.1 UniProtKB/TrEMBL
  ENSRNOT00000103083.1 UniProtKB/TrEMBL
  ENSRNOT00000103795.1 UniProtKB/TrEMBL
InterPro DUF1692 UniProtKB/TrEMBL
  Erv UniProtKB/TrEMBL
  Erv_N UniProtKB/TrEMBL
NCBI Gene 287177 ENTREZGENE
PANTHER ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN 1 UniProtKB/TrEMBL
  PTHR10984 UniProtKB/TrEMBL
Pfam COPIIcoated_ERV UniProtKB/TrEMBL
  ERGIC_N UniProtKB/TrEMBL
PhenoGen Ergic1 PhenoGen
RatGTEx ENSRNOG00000003508 RatGTEx
UniProt A0A8I5Y591_RAT UniProtKB/TrEMBL
  A0A8I5ZUG2_RAT UniProtKB/TrEMBL
  A0A8I5ZUU5_RAT UniProtKB/TrEMBL
  F1LU48 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-06-08 Ergic1  endoplasmic reticulum-golgi intermediate compartment 1  Ergic1  endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-07-08 Ergic1  endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1  LOC682838  similar to Endoplasmic reticulum-Golgi intermediate compartment protein 1 (ER-Golgi intermediate compartment 32 kDa protein) (ERGIC-32)  Data merged from RGD:1594010 1643240 APPROVED
2008-03-04 Ergic1  endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1  LOC287177  similar to Endoplasmic reticulum-Golgi intermediate compartment protein 1 (ER-Golgi intermediate compartment 32 kDa protein) (ERGIC-32)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC682838  similar to Endoplasmic reticulum-Golgi intermediate compartment protein 1 (ER-Golgi intermediate compartment 32 kDa protein) (ERGIC-32)      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC287177  similar to Endoplasmic reticulum-Golgi intermediate compartment protein 1 (ER-Golgi intermediate compartment 32 kDa protein) (ERGIC-32)      Symbol and Name status set to provisional 70820 PROVISIONAL