Imported Disease Annotations - MGITerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | atrioventricular septal defect | | ISS | Glyr1 (Mus musculus) | 13592920 | OMIM:600309 more ... | MouseDO | | |
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Imported Disease Annotations - MGITerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | atrioventricular septal defect | | ISS | Glyr1 (Mus musculus) | 13592920 | OMIM:600309 more ... | MouseDO | | |
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# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | GOA pipeline | RGD automated data pipeline |
3. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
PMID:12477932 | PMID:20850016 | PMID:23260659 | PMID:29759984 | PMID:31505169 |
Glyr1 (Rattus norvegicus - Norway rat) |
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GLYR1 (Homo sapiens - human) |
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Glyr1 (Mus musculus - house mouse) |
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Glyr1 (Chinchilla lanigera - long-tailed chinchilla) |
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GLYR1 (Pan paniscus - bonobo/pygmy chimpanzee) |
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GLYR1 (Canis lupus familiaris - dog) |
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Glyr1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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GLYR1 (Sus scrofa - pig) |
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GLYR1 (Chlorocebus sabaeus - green monkey) |
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Glyr1 (Heterocephalus glaber - naked mole-rat) |
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Variants in Glyr1
126 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
SHGC-61126 |
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AW545332 |
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alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | |||||||||||||
Medium | 3 | 39 | 57 | 41 | 19 | 41 | 8 | 11 | 74 | 35 | 41 | 11 | 8 |
Low | 4 | ||||||||||||
Below cutoff |
RefSeq Transcripts | NM_001007800 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_039086260 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039086261 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039086262 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039086263 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AC123492 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
BC085931 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH474017 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JAXUCZ010000010 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSRNOT00000004159 ⟹ ENSRNOP00000004159 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000095486 ⟹ ENSRNOP00000090372 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000104888 ⟹ ENSRNOP00000091780 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000106608 ⟹ ENSRNOP00000078810 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_001007800 ⟹ NP_001007801 | ||||||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_039086260 ⟹ XP_038942188 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039086261 ⟹ XP_038942189 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039086262 ⟹ XP_038942190 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039086263 ⟹ XP_038942191 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Protein RefSeqs | NP_001007801 | (Get FASTA) | NCBI Sequence Viewer |
XP_038942188 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038942189 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038942190 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038942191 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAH85931 | (Get FASTA) | NCBI Sequence Viewer |
EDL96266 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSRNOP00000004159 | ||
ENSRNOP00000004159.5 | |||
ENSRNOP00000078810.1 | |||
ENSRNOP00000090372 | |||
ENSRNOP00000090372.1 | |||
ENSRNOP00000091780.1 | |||
GenBank Protein | Q5RKH0 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_001007801 ⟸ NM_001007800 |
- UniProtKB: | Q5RKH0 (UniProtKB/Swiss-Prot), A6K4P4 (UniProtKB/TrEMBL), A0A8I5ZPH2 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | ENSRNOP00000004159 ⟸ ENSRNOT00000004159 |
RefSeq Acc Id: | XP_038942188 ⟸ XM_039086260 |
- Peptide Label: | isoform X1 |
- UniProtKB: | A0A8I5ZPH2 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038942189 ⟸ XM_039086261 |
- Peptide Label: | isoform X2 |
- UniProtKB: | A0A8I6GIU5 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038942190 ⟸ XM_039086262 |
- Peptide Label: | isoform X3 |
- UniProtKB: | A0A8I6GIU5 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038942191 ⟸ XM_039086263 |
- Peptide Label: | isoform X4 |
RefSeq Acc Id: | ENSRNOP00000091780 ⟸ ENSRNOT00000104888 |
RefSeq Acc Id: | ENSRNOP00000090372 ⟸ ENSRNOT00000095486 |
RefSeq Acc Id: | ENSRNOP00000078810 ⟸ ENSRNOT00000106608 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-Q5RKH0-F1-model_v2 | AlphaFold | Q5RKH0 | 1-552 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
RGD ID: | 13696963 | ||||||||
Promoter ID: | EPDNEW_R7488 | ||||||||
Type: | multiple initiation site | ||||||||
Name: | Glyr1_1 | ||||||||
Description: | glyoxylate reductase 1 homolog | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | RGD:1309459 | AgrOrtholog |
BioCyc Gene | G2FUF-26058 | BioCyc |
Ensembl Genes | ENSRNOG00000003065 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Transcript | ENSRNOT00000004159 | ENTREZGENE |
ENSRNOT00000004159.6 | UniProtKB/TrEMBL | |
ENSRNOT00000095486.1 | UniProtKB/TrEMBL | |
ENSRNOT00000104888.1 | UniProtKB/TrEMBL | |
ENSRNOT00000106608.1 | UniProtKB/TrEMBL | |
Gene3D-CATH | 2.30.30.140 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
NAD(P)-binding Rossmann-like Domain | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
IMAGE_CLONE | IMAGE:7111787 | IMAGE-MGC_LOAD |
InterPro | 6-PGluconate_DH-like_C_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
6PGD_dom2 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
6PGDH_NADP-bd | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
NAD(P)-bd_dom_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
NADP-bd | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
NP60_PWWP | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
PWWP_dom | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KEGG Report | rno:360477 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
MGC_CLONE | MGC:94905 | IMAGE-MGC_LOAD |
NCBI Gene | 360477 | ENTREZGENE |
PANTHER | OXIDOREDUCTASE GLYR1-RELATED | UniProtKB/Swiss-Prot |
OXIDOREDUCTASE GLYR1-RELATED | UniProtKB/Swiss-Prot | |
OXIDOREDUCTASE GLYR1-RELATED | UniProtKB/TrEMBL | |
OXIDOREDUCTASE GLYR1-RELATED | UniProtKB/TrEMBL | |
Pfam | NAD_binding_11 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
NAD_binding_2 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
PWWP | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
PhenoGen | Glyr1 | PhenoGen |
PROSITE | PWWP | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
RatGTEx | ENSRNOG00000003065 | RatGTEx |
SMART | PWWP | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Superfamily-SCOP | SSF48179 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
SSF51735 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Tudor/PWWP/MBT | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
UniProt | A0A8I5ZPH2 | ENTREZGENE, UniProtKB/TrEMBL |
A0A8I6AEB1_RAT | UniProtKB/TrEMBL | |
A0A8I6GIU5 | ENTREZGENE, UniProtKB/TrEMBL | |
A0A8L2Q224_RAT | UniProtKB/TrEMBL | |
A6K4P4 | ENTREZGENE, UniProtKB/TrEMBL | |
GLYR1_RAT | UniProtKB/Swiss-Prot, ENTREZGENE |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2016-03-29 | Glyr1 | glyoxylate reductase 1 homolog | Glyr1 | glyoxylate reductase 1 homolog (Arabidopsis) | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2011-08-02 | Glyr1 | glyoxylate reductase 1 homolog (Arabidopsis) | N-pac | cytokine-like nuclear factor n-pac | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2008-10-02 | N-pac | cytokine-like nuclear factor n-pac | RGD1309459 | similar to RIKEN cDNA 3930401K13 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2005-12-06 | RGD1309459 | similar to RIKEN cDNA 3930401K13 | RGD1309459_predicted | similar to RIKEN cDNA 3930401K13 (predicted) | Symbol and Name updated | 1559027 | APPROVED |
2005-01-20 | RGD1309459_predicted | similar to RIKEN cDNA 3930401K13 (predicted) | LOC360477_predicted | Symbol and Name status set to approved | 1331353 | APPROVED | |
2005-01-12 | LOC360477_predicted | similar to RIKEN cDNA 3930401K13 (predicted) | Symbol and Name status set to provisional | 70820 | PROVISIONAL |