Marf1 (meiosis regulator and mRNA stability factor 1) - Rat Genome Database

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Gene: Marf1 (meiosis regulator and mRNA stability factor 1) Rattus norvegicus
Analyze
Symbol: Marf1
Name: meiosis regulator and mRNA stability factor 1
RGD ID: 619770
Description: Predicted to enable CCR4-NOT complex binding activity and mRNA base-pairing post-transcriptional repressor activity. Predicted to be involved in female meiotic nuclear division; oogenesis; and post-transcriptional gene silencing. Predicted to act upstream of or within double-strand break repair. Predicted to be located in Golgi apparatus and peroxisome. Predicted to be active in cytoplasm. Orthologous to human MARF1 (meiosis regulator and mRNA stability factor 1); INTERACTS WITH 1,2,4-trimethylbenzene; 2,6-dinitrotoluene; ammonium chloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: limkain b1; limkain-b1; Lkap; LOC100910288; meiosis arrest female 1; meiosis arrest female protein 1; meiosis arrest female protein 1-like
RGD Orthologs
Human
Mouse
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Marf1-ps1  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.210888,053 - 932,760 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl10888,076 - 932,753 (+)Ensembl
Rnor_6.010908,806 - 953,481 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10908,806 - 953,474 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01028,243 - 72,912 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410826,803 - 872,214 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.110826,802 - 872,214 (+)NCBI
Celera1011,477,637 - 11,521,007 (+)NCBICelera
Cytogenetic Map10q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Information Derived from GenBank Report RGD, Sept. 2003
Additional References at PubMed
PMID:15932519   PMID:19389623   PMID:19946888   PMID:22442484   PMID:23090997  


Genomics

Comparative Map Data
Marf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.210888,053 - 932,760 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl10888,076 - 932,753 (+)Ensembl
Rnor_6.010908,806 - 953,481 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10908,806 - 953,474 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01028,243 - 72,912 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410826,803 - 872,214 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.110826,802 - 872,214 (+)NCBI
Celera1011,477,637 - 11,521,007 (+)NCBICelera
Cytogenetic Map10q11NCBI
MARF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381615,594,387 - 15,643,154 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1615,594,387 - 15,643,154 (-)EnsemblGRCh38hg38GRCh38
GRCh371615,688,244 - 15,737,011 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361615,595,745 - 15,644,510 (-)NCBINCBI36hg18NCBI36
Celera1615,368,702 - 15,417,500 (-)NCBI
Cytogenetic Map16p13.11NCBI
HuRef1615,082,130 - 15,130,849 (-)NCBIHuRef
CHM1_11615,772,586 - 15,821,403 (-)NCBICHM1_1
T2T-CHM13v2.01615,599,246 - 15,648,059 (-)NCBI
Marf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391613,927,030 - 13,977,157 (-)NCBIGRCm39mm39
GRCm39 Ensembl1613,927,037 - 13,981,215 (-)Ensembl
GRCm381614,109,166 - 14,159,278 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1614,109,173 - 14,163,351 (-)EnsemblGRCm38mm10GRCm38
MGSCv371614,110,626 - 14,159,367 (-)NCBIGRCm37mm9NCBIm37
MGSCv361614,024,111 - 14,077,521 (-)NCBImm8
Celera1614,717,048 - 14,765,808 (-)NCBICelera
Cytogenetic Map16A1NCBI
MARF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl37,180,749 - 7,228,410 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.137,180,762 - 7,228,229 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
MARF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1514,616,834 - 14,663,608 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl514,616,814 - 14,663,520 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606815,377,055 - 15,423,836 (+)NCBIVero_WHO_p1.0
Marf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624782186,813 - 231,136 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_004624782184,654 - 231,162 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
D10Mco48  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.210891,891 - 892,046 (+)MAPPERmRatBN7.2
Rnor_6.010912,616 - 912,770NCBIRnor6.0
Rnor_6.01032,053 - 32,207NCBIRnor6.0
Rnor_5.01032,053 - 32,207UniSTSRnor5.0
Rnor_5.01011,592,869 - 11,593,023UniSTSRnor5.0
RGSC_v3.410830,612 - 830,767RGDRGSC3.4
RGSC_v3.410830,613 - 830,767UniSTSRGSC3.4
RGSC_v3.110830,612 - 830,767RGD
Celera1011,481,447 - 11,481,601UniSTS
Cytogenetic Map10q11UniSTS
C87306  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.210930,863 - 931,117 (+)MAPPERmRatBN7.2
Rnor_6.010951,585 - 951,838NCBIRnor6.0
Rnor_6.01071,016 - 71,269NCBIRnor6.0
Rnor_5.01071,016 - 71,269UniSTSRnor5.0
Rnor_5.01011,631,839 - 11,632,092UniSTSRnor5.0
RGSC_v3.410869,582 - 869,835UniSTSRGSC3.4
RGSC_v3.410870,327 - 870,580UniSTSRGSC3.4
Celera102,855 - 3,108UniSTS
Cytogenetic Map10q11UniSTS
RH129984  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.0102,452,538 - 2,452,729NCBIRnor5.0
Rnor_5.01072,675 - 72,866NCBIRnor5.0
Rnor_5.01011,633,498 - 11,633,689NCBIRnor5.0
RGSC_v3.410196,914 - 197,104UniSTSRGSC3.4
RGSC_v3.410871,987 - 872,177UniSTSRGSC3.4
Celera104,515 - 4,705UniSTS
Cytogenetic Map10q11UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634329Pia15Pristane induced arthritis QTL 153.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10124158324Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135225947Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138328221Rat
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142315980Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:485
Count of miRNA genes:269
Interacting mature miRNAs:327
Transcripts:ENSRNOT00000003193
Prediction methods:Microtar, Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000003193   ⟹   ENSRNOP00000003193
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl10888,082 - 932,753 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000077828   ⟹   ENSRNOP00000071564
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl10888,076 - 932,753 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000091520   ⟹   ENSRNOP00000073018
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl10888,082 - 932,753 (+)Ensembl
Rnor_6.0 Ensembl10908,806 - 953,474 (+)Ensembl
RefSeq Acc Id: NM_133421   ⟹   NP_596912
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.210888,082 - 932,751 (+)NCBI
Rnor_6.010908,806 - 953,472 (+)NCBI
Rnor_5.01028,243 - 72,912 (+)NCBI
RGSC_v3.410826,803 - 872,214 (+)RGD
Celera1011,477,637 - 11,521,007 (+)NCBI
Sequence:
RefSeq Acc Id: XM_003750779   ⟹   XP_003750827
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.210888,213 - 930,528 (+)NCBI
Rnor_6.010908,943 - 953,481 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245854   ⟹   XP_006245916
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.210888,053 - 932,760 (+)NCBI
Rnor_6.010908,830 - 953,481 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245855   ⟹   XP_006245917
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.210892,664 - 930,528 (+)NCBI
Rnor_6.010913,439 - 953,481 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245856   ⟹   XP_006245918
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.210888,053 - 930,528 (+)NCBI
Rnor_6.010908,830 - 953,481 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_596912   ⟸   NM_133421
- UniProtKB: Q8VIG2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006245916   ⟸   XM_006245854
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006245918   ⟸   XM_006245856
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_003750827   ⟸   XM_003750779
- Peptide Label: isoform X1
- UniProtKB: F1LNE9 (UniProtKB/Swiss-Prot),   Q8VIG2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006245917   ⟸   XM_006245855
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSRNOP00000073018   ⟸   ENSRNOT00000091520
RefSeq Acc Id: ENSRNOP00000003193   ⟸   ENSRNOT00000003193
RefSeq Acc Id: ENSRNOP00000071564   ⟸   ENSRNOT00000077828
Protein Domains
HTH OST-type   NYN   RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A096P6L2-F1-model_v2 AlphaFold A0A096P6L2 1-1735 view protein structure
AF-Q8VIG2-F1-model_v2 AlphaFold Q8VIG2 1-1735 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696922
Promoter ID:EPDNEW_R7447
Type:multiple initiation site
Name:Marf1_1
Description:meiosis regulator and mRNA stability factor 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.010908,801 - 908,861EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:619770 AgrOrtholog
BioCyc Gene G2FUF-26254 BioCyc
Ensembl Genes ENSRNOG00000056248 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000003193.4 UniProtKB/TrEMBL
  ENSRNOP00000071564 ENTREZGENE
  ENSRNOP00000071564.2 UniProtKB/TrEMBL
  ENSRNOP00000073018 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000003193.7 UniProtKB/TrEMBL
  ENSRNOT00000077828 ENTREZGENE
  ENSRNOT00000077828.2 UniProtKB/TrEMBL
  ENSRNOT00000091520 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.420.610 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.70.330 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro LOTUS-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Marf1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MARF1_LOTUS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Marf1_RRM1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Marf1_RRM2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NYN_limkain-b1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  OST-HTH/LOTUS_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:170946 UniProtKB/Swiss-Prot
NCBI Gene 170946 ENTREZGENE
PANTHER PTHR14379 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Limkain-b1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MARF1_LOTUS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NYN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  OST-HTH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Marf1 PhenoGen
PROSITE HTH_OST UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A096P6L2_RAT UniProtKB/TrEMBL
  A0A0G2K0S5_RAT UniProtKB/TrEMBL
  F1LNE9 ENTREZGENE
  MARF1_RAT UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary F1LNE9 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Marf1  meiosis regulator and mRNA stability factor 1  LOC100910288  meiosis arrest female protein 1-like  Data Merged 737654 PROVISIONAL
2017-03-29 Marf1  meiosis regulator and mRNA stability factor 1  Marf1  meiosis arrest female 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-07-19 Marf1  meiosis arrest female 1  Lkap  limkain b1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-07-05 LOC100910288  meiosis arrest female protein 1-like      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_physical_interaction associates with LIM kinase-2 634611