Trap1 (TNF receptor-associated protein 1) - Rat Genome Database

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Gene: Trap1 (TNF receptor-associated protein 1) Rattus norvegicus
Analyze
Symbol: Trap1
Name: TNF receptor-associated protein 1
RGD ID: 1359733
Description: Enables protein kinase binding activity. Involved in negative regulation of intrinsic apoptotic signaling pathway in response to hydrogen peroxide. Located in mitochondrial inner membrane and mitochondrial intermembrane space. Orthologous to human TRAP1 (TNF receptor associated protein 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol; 3H-1,2-dithiole-3-thione.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: heat shock protein 75 kDa, mitochondrial; HSP 75; MGC95278; TNFR-associated protein 1; TRAP-1; tumor necrosis factor type 1 receptor associated protein; tumor necrosis factor type 1 receptor-associated protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Candidate Gene For: Alc5 Alc9
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81011,971,259 - 12,005,306 (+)NCBIGRCr8
mRatBN7.21011,464,882 - 11,498,931 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1011,464,821 - 11,498,981 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1016,172,885 - 16,206,519 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01015,661,716 - 15,695,348 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01011,330,648 - 11,364,679 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01011,724,032 - 11,757,682 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1011,724,032 - 11,757,681 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01010,478,499 - 10,512,149 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41011,728,524 - 11,762,571 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11011,728,523 - 11,762,570 (+)NCBI
Celera1010,421,446 - 10,455,484 (+)NCBICelera
Cytogenetic Map10q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-amino-14,16-dimethyloctadecan-3-ol  (ISO)
3-chloropropane-1,2-diol  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
acrolein  (ISO)
acrylamide  (ISO)
actinomycin D  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
amitrole  (EXP)
arsenous acid  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
Brodifacoum  (EXP)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
cannabidiol  (ISO)
captan  (ISO)
carbon nanotube  (ISO)
casticin  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (EXP,ISO)
choline  (ISO)
cisplatin  (ISO)
clofibric acid  (EXP)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
desferrioxamine B  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (ISO)
dicrotophos  (ISO)
diethyl maleate  (ISO)
diethyl phthalate  (ISO)
diisobutyl phthalate  (ISO)
diisononyl phthalate  (ISO)
dopamine  (ISO)
doxorubicin  (ISO)
enzyme inhibitor  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
fenthion  (ISO)
fenvalerate  (EXP)
flutamide  (EXP)
folic acid  (ISO)
folpet  (ISO)
FR900359  (ISO)
fructose  (EXP)
fulvestrant  (ISO)
glafenine  (EXP)
hydrogen peroxide  (ISO)
hypochlorous acid  (ISO)
indometacin  (ISO)
inulin  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
lithocholic acid  (ISO)
Mesaconitine  (EXP)
methapyrilene  (EXP,ISO)
methidathion  (ISO)
methimazole  (EXP)
methyl methanesulfonate  (ISO)
microcystin-LR  (EXP)
N-nitrosodiethylamine  (EXP)
N-nitrosomorpholine  (EXP)
nimesulide  (EXP)
Nutlin-3  (ISO)
ochratoxin A  (ISO)
oleanolic acid  (ISO)
ozone  (ISO)
paracetamol  (ISO)
perfluorododecanoic acid  (EXP)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
pinostrobin  (ISO)
pirinixic acid  (ISO)
potassium dichromate  (ISO)
propiconazole  (EXP)
quercetin  (ISO)
reactive oxygen species  (ISO)
resveratrol  (ISO)
rotenone  (EXP,ISO)
S-butyl-DL-homocysteine (S,R)-sulfoximine  (EXP)
SB 431542  (ISO)
SNX-2112  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (EXP,ISO)
sulfadimethoxine  (EXP)
T-2 toxin  (EXP)
temozolomide  (ISO)
tetrachloromethane  (EXP)
thapsigargin  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
trichloroethene  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)
zearalenone  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. A new member of the hsp90 family of molecular chaperones interacts with the retinoblastoma protein during mitosis and after heat shock. Chen CF, etal., Mol Cell Biol 1996 Sep;16(9):4691-9.
2. The hsp90-related protein TRAP1 is a mitochondrial protein with distinct functional properties. Felts SJ, etal., J Biol Chem 2000 Feb 4;275(5):3305-12.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
5. Involvement of tumor necrosis factor receptor-associated protein 1 (TRAP1) in apoptosis induced by beta-hydroxyisovalerylshikonin. Masuda Y, etal., J Biol Chem 2004 Oct 8;279(41):42503-15. Epub 2004 Jul 28.
6. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
7. PINK1 protects against oxidative stress by phosphorylating mitochondrial chaperone TRAP1. Pridgeon JW, etal., PLoS Biol. 2007 Jul;5(7):e172. Epub 2007 Jun 19.
8. GOA pipeline RGD automated data pipeline
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:14651853   PMID:15489334   PMID:18614015   PMID:19946888   PMID:22658674   PMID:23376485   PMID:23564345   PMID:24113185   PMID:27592455   PMID:32215175  


Genomics

Comparative Map Data
Trap1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81011,971,259 - 12,005,306 (+)NCBIGRCr8
mRatBN7.21011,464,882 - 11,498,931 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1011,464,821 - 11,498,981 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1016,172,885 - 16,206,519 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01015,661,716 - 15,695,348 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01011,330,648 - 11,364,679 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01011,724,032 - 11,757,682 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1011,724,032 - 11,757,681 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01010,478,499 - 10,512,149 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41011,728,524 - 11,762,571 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11011,728,523 - 11,762,570 (+)NCBI
Celera1010,421,446 - 10,455,484 (+)NCBICelera
Cytogenetic Map10q12NCBI
TRAP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38163,658,037 - 3,717,524 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl163,651,639 - 3,717,553 (-)EnsemblGRCh38hg38GRCh38
GRCh37163,708,038 - 3,767,525 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36163,648,039 - 3,707,599 (-)NCBINCBI36Build 36hg18NCBI36
Build 34163,648,039 - 3,707,514NCBI
Celera163,914,746 - 3,974,292 (-)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef163,677,147 - 3,736,537 (-)NCBIHuRef
CHM1_1163,708,058 - 3,767,598 (-)NCBICHM1_1
T2T-CHM13v2.0163,685,304 - 3,744,794 (-)NCBIT2T-CHM13v2.0
Trap1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39163,857,835 - 3,895,704 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl163,857,835 - 3,895,691 (-)EnsemblGRCm39 Ensembl
GRCm38164,039,971 - 4,077,840 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl164,039,971 - 4,077,827 (-)EnsemblGRCm38mm10GRCm38
MGSCv37164,039,977 - 4,077,810 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36163,955,205 - 3,993,038 (-)NCBIMGSCv36mm8
Celera164,672,290 - 4,710,127 (-)NCBICelera
Cytogenetic Map16A1NCBI
cM Map162.38NCBI
Trap1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544213,696,810 - 13,733,161 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544213,697,471 - 13,733,161 (+)NCBIChiLan1.0ChiLan1.0
TRAP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2184,182,860 - 4,242,611 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1167,966,432 - 8,025,977 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0162,578,483 - 2,637,996 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1163,753,707 - 3,786,580 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl163,753,799 - 3,786,429 (-)Ensemblpanpan1.1panPan2
TRAP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1637,544,929 - 37,596,789 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl637,544,580 - 37,597,427 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha638,873,867 - 38,925,736 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0637,760,017 - 37,811,929 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl637,759,669 - 37,812,558 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1637,543,278 - 37,595,139 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0637,436,377 - 37,488,256 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0637,847,123 - 37,898,963 (+)NCBIUU_Cfam_GSD_1.0
Trap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344106,004,468 - 106,041,800 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936694667,691 - 704,994 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936694667,687 - 704,994 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRAP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl338,536,668 - 38,603,015 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1338,536,710 - 38,595,273 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2339,804,652 - 39,862,836 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TRAP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.153,339,954 - 3,405,218 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl53,340,040 - 3,405,166 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606827,405,950 - 27,475,869 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trap1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248241,446,827 - 1,511,225 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248241,446,827 - 1,511,062 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Trap1
165 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:39
Count of miRNA genes:38
Interacting mature miRNAs:39
Transcripts:ENSRNOT00000008966
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9589136Insul27Insulin level QTL 2710.460.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)101147401056474010Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10538701450387014Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10538701450387014Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
634329Pia15Pristane induced arthritis QTL 153.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10124158324Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10637574651375746Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135225947Rat
7387235Uae41Urinary albumin excretion QTL 415.260.1874urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)10129497586Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)10580199062146030Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat
737820Alc9Alcohol consumption QTL 92.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10514402719233348Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10538701450387014Rat
631828Alc5Alcohol consumption QTL 52.4consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10514402717245662Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138328221Rat
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
631660Hcar1Hepatocarcinoma resistance QTL 13.40.0001liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)10615418215990232Rat
1576304Schws7Schwannoma susceptibility QTL 70.0115nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)10476552719816042Rat
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142315980Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
9590268Scort13Serum corticosterone level QTL 133.260.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
9590310Scort19Serum corticosterone level QTL 196.30.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat

Markers in Region
RH129035  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21011,498,936 - 11,499,117 (+)MAPPERmRatBN7.2
Rnor_6.01011,757,688 - 11,757,868NCBIRnor6.0
Rnor_5.01010,512,155 - 10,512,335UniSTSRnor5.0
RGSC_v3.41011,762,577 - 11,762,757UniSTSRGSC3.4
Celera1010,455,490 - 10,455,670UniSTS
Cytogenetic Map10q12UniSTS
RH94863  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21011,498,754 - 11,498,992 (+)MAPPERmRatBN7.2
Rnor_6.01011,757,506 - 11,757,743NCBIRnor6.0
Rnor_5.01010,511,973 - 10,512,210UniSTSRnor5.0
RGSC_v3.41011,762,395 - 11,762,632UniSTSRGSC3.4
Celera1010,455,308 - 10,455,545UniSTS
Cytogenetic Map10q12UniSTS
RH140196  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21011,498,541 - 11,498,883 (+)MAPPERmRatBN7.2
Rnor_6.01011,757,293 - 11,757,634NCBIRnor6.0
Rnor_5.01010,511,760 - 10,512,101UniSTSRnor5.0
RGSC_v3.41011,762,182 - 11,762,523UniSTSRGSC3.4
Celera1010,455,095 - 10,455,436UniSTS
Cytogenetic Map10q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000008966   ⟹   ENSRNOP00000008966
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1011,464,821 - 11,498,981 (+)Ensembl
Rnor_6.0 Ensembl1011,724,032 - 11,757,681 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000107479   ⟹   ENSRNOP00000093880
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1011,472,027 - 11,498,981 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000118800   ⟹   ENSRNOP00000091021
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1011,464,821 - 11,498,981 (+)Ensembl
RefSeq Acc Id: NM_001039001   ⟹   NP_001034090
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81011,971,259 - 12,005,306 (+)NCBI
mRatBN7.21011,464,882 - 11,498,931 (+)NCBI
Rnor_6.01011,724,032 - 11,757,682 (+)NCBI
Rnor_5.01010,478,499 - 10,512,149 (+)NCBI
RGSC_v3.41011,728,524 - 11,762,571 (+)RGD
Celera1010,421,446 - 10,455,484 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001034090 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH83909 (Get FASTA)   NCBI Sequence Viewer  
  EDL96307 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000008966.4
  ENSRNOP00000091021.1
  ENSRNOP00000093880.1
GenBank Protein Q5XHZ0 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001034090   ⟸   NM_001039001
- Peptide Label: precursor
- UniProtKB: Q5XHZ0 (UniProtKB/Swiss-Prot),   A6K4T5 (UniProtKB/TrEMBL),   A0A8I6AFD9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000008966   ⟸   ENSRNOT00000008966
Ensembl Acc Id: ENSRNOP00000093880   ⟸   ENSRNOT00000107479
Ensembl Acc Id: ENSRNOP00000091021   ⟸   ENSRNOT00000118800
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5XHZ0-F1-model_v2 AlphaFold Q5XHZ0 1-706 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696980
Promoter ID:EPDNEW_R7505
Type:initiation region
Name:Trap1_1
Description:TNF receptor-associated protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01011,724,018 - 11,724,078EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359733 AgrOrtholog
BioCyc Gene G2FUF-26001 BioCyc
Ensembl Genes ENSRNOG00000005418 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000008966.5 UniProtKB/TrEMBL
  ENSRNOT00000107479.1 UniProtKB/TrEMBL
  ENSRNOT00000118800.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.120.790 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.230.80 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.565.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.11260 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7134204 IMAGE-MGC_LOAD
InterPro HATPase_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HATPase_C_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HSP90_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Hsp90_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Hsp90_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S5_D2-typ_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:287069 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:95278 IMAGE-MGC_LOAD
NCBI Gene 287069 ENTREZGENE
PANTHER HEAT SHOCK PROTEIN 75 KDA, MITOCHONDRIAL-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11528 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam HATPase_c_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HSP90 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Trap1 PhenoGen
PIRSF Hsp90 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS HEATSHOCK90 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000005418 RatGTEx
SMART HATPase_c UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF110942 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF54211 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF55874 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6AFD9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GKV1_RAT UniProtKB/TrEMBL
  A0A8L2UI37_RAT UniProtKB/TrEMBL
  A6K4T5 ENTREZGENE, UniProtKB/TrEMBL
  Q5XHZ0 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Trap1  TNF receptor-associated protein 1    tumor necrosis factor type 1 receptor associated protein  Name updated 1299863 APPROVED
2005-07-29 Trap1  tumor necrosis factor type 1 receptor associated protein      Symbol and Name status set to provisional 70820 PROVISIONAL