9530082P21Rikl (RIKEN cDNA 9530082P21 gene like) - Rat Genome Database

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Gene: 9530082P21Rikl (RIKEN cDNA 9530082P21 gene like) Rattus norvegicus
Analyze
Symbol: 9530082P21Rikl (Ensembl: RGD1561157)
Name: RIKEN cDNA 9530082P21 gene like (Ensembl:RGD1561157)
RGD ID: 1561157
Description: INTERACTS WITH (+)-schisandrin B; acetamide; acrylamide
Type: protein-coding
RefSeq Status: PREDICTED
Previously known as: hypothetical LOC360487; hypothetical protein LOC360487; LOC360487; RGD1561157; RGD1561157; uncharacterized protein LOC360487
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81013,275,611 - 13,276,535 (+)NCBIGRCr8
mRatBN7.21012,771,023 - 12,771,947 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1012,771,023 - 12,771,947 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1017,515,303 - 17,516,227 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01017,004,092 - 17,005,016 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01012,503,674 - 12,504,598 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01013,084,304 - 13,085,228 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1013,084,304 - 13,085,228 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01012,903,766 - 12,904,690 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41013,006,256 - 13,007,180 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1012,466,322 - 12,467,246 (+)NCBICelera
Cytogenetic Map10q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

Variants

.
Variants in 9530082P21Rikl
2 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:81
Count of miRNA genes:66
Interacting mature miRNAs:72
Transcripts:ENSRNOT00000066310
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634329Pia15Pristane induced arthritis QTL 153.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10124158324Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135225947Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138328221Rat
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142315980Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
1576304Schws7Schwannoma susceptibility QTL 70.0115nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)10476552719816042Rat
631828Alc5Alcohol consumption QTL 52.4consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10514402717245662Rat
737820Alc9Alcohol consumption QTL 92.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10514402719233348Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10538701450387014Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10538701450387014Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10538701450387014Rat
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)10580199062146030Rat
631660Hcar1Hepatocarcinoma resistance QTL 13.40.0001liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)10615418215990232Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10637574651375746Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
9590310Scort19Serum corticosterone level QTL 196.30.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
9590268Scort13Serum corticosterone level QTL 133.260.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
9589136Insul27Insulin level QTL 2710.460.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)101147401056474010Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 9 6 9 11
Low 1 43 57 41 10 41 8 11 66 29 32 8
Below cutoff 8

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000066310   ⟹   ENSRNOP00000059381
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1012,771,023 - 12,771,947 (+)Ensembl
Rnor_6.0 Ensembl1013,084,304 - 13,085,228 (+)Ensembl
RefSeq Acc Id: NM_001134569   ⟹   NP_001128041
RefSeq Status: PREDICTED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81013,275,611 - 13,276,535 (+)NCBI
mRatBN7.21012,771,023 - 12,771,947 (+)NCBI
Rnor_6.01013,084,304 - 13,085,228 (+)NCBI
Rnor_5.01012,903,766 - 12,904,690 (+)NCBI
RGSC_v3.41013,006,256 - 13,007,180 (+)RGD
Celera1012,466,322 - 12,467,246 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001128041 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM03774 (Get FASTA)   NCBI Sequence Viewer  
  EDM03775 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000059381
  ENSRNOP00000059381.1
Reference Protein Sequences
RefSeq Acc Id: NP_001128041   ⟸   NM_001134569
- UniProtKB: D4A561 (UniProtKB/TrEMBL),   A6HCL9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000059381   ⟸   ENSRNOT00000066310

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A561-F1-model_v2 AlphaFold D4A561 1-135 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696996
Promoter ID:EPDNEW_R7520
Type:multiple initiation site
Name:RGD1561157_1
Description:RGD1561157
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01013,084,368 - 13,084,428EPDNEW

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-25907 BioCyc
Ensembl Genes ENSRNOG00000042258 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000066310 ENTREZGENE
  ENSRNOT00000066310.2 UniProtKB/TrEMBL
KEGG Report rno:360487 UniProtKB/TrEMBL
NCBI Gene 360487 ENTREZGENE
PhenoGen 9530082P21Rikl PhenoGen
RatGTEx ENSRNOG00000042258 RatGTEx
UniProt A6HCL9 ENTREZGENE, UniProtKB/TrEMBL
  D4A561 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 9530082P21Rikl  RIKEN cDNA 9530082P21 gene like  RGD1561157  RGD1561157  Symbol and Name Changed 1299863 APPROVED
2008-04-30 RGD1561157  RGD1561157   RGD1561157_predicted  RGD1561157 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1561157_predicted  RGD1561157 (predicted)  LOC360487  hypothetical LOC360487  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC360487  hypothetical LOC360487      Symbol and Name status set to provisional 70820 PROVISIONAL